>POLG_BVDVN (P19711) Genome polyprotein [Contains: N-terminal protease (EC|
            3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C;
            E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1
            (gp33); Envelope glycoprotein E2 (gp55); p7;
            Nonstructural protein 2
          Length = 3988

 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/106 (26%), Positives = 45/106 (42%)
 Frame = +2

Query: 215  CKKCGDFHLWIYTGRPKLQGRWCQDCKEFHQAKDGDGWVEQSFQPVLFGMLHKPDLPHAF 394
            C +C   H      R     R+C +C   H A++GD W E S   +             F
Sbjct: 1538 CSRCQGKHRRFEMDREPKSARYCAECNRLHPAEEGDFWAESSMLGLKITY---------F 1588

Query: 395  VCAESSIFDVTEWFSCQGMRCPPNTHKPTFPRECQFGKAR*WQREH 532
               +  ++D+TEW  CQ +   P+TH+   P    FG    +++E+
Sbjct: 1589 ALMDGKVYDITEWAGCQRVGISPDTHR--VPCHISFGSRMPFRQEY 1632

>DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5)|
          Length = 915

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +2

Query: 224 CGDFHLWIYTGRPKLQGRWCQDCKEFHQAKDGDGWVEQSFQPVLFGMLHKPDLPHAFVCA 403
           C + H  + T     Q R C+ C   H AK  D WVE+          H       + C 
Sbjct: 756 CENTHFRVATSISPSQARSCKRCGVKHPAKQNDIWVEKR---------HLGLTSTYYTCT 806

Query: 404 ESSIFDVTEWFSCQGMR 454
           ++ ++D+T W +C+  R
Sbjct: 807 DNVVYDITSWATCKSQR 823

>CSIE_ECOLI (P54901) Stationary phase-inducible protein csiE|
          Length = 426

 Score = 33.1 bits (74), Expect = 0.50
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
 Frame = +2

Query: 266 LQGRWCQDCKEFHQAKD-GDGWVEQSFQPV----------LFGMLHKPD 379
           LQ RW + C EF  A++ G  W  ++ QPV          LF ML  PD
Sbjct: 174 LQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSMLRVPD 222

>DSBD_HAEIN (P44919) Thiol:disulfide interchange protein dsbD precursor (EC|
           1.8.1.8) (Protein-disulfide reductase) (Disulfide
           reductase) (C-type cytochrome biogenesis protein cycZ)
          Length = 579

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 266 LQGRWCQDCKEFHQAKDGDGWVEQSFQPVL 355
           L   WC  CKEF +    D  V+Q FQ +L
Sbjct: 490 LYADWCVACKEFEKLTFSDPQVQQQFQNIL 519

>PEP7_SCHPO (O13786) Vacuolar segregation protein pep7|
          Length = 536

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
 Frame = +2

Query: 197 LSRRIACKKCG----DFH------LWIYTGRPKLQGRWCQDCKEFHQAK----DGDGWVE 334
           ++  I C+KCG    +FH      L I+       G WC+ C+E ++ +    D +G + 
Sbjct: 152 INGHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCRVCRECYEGRPGYNDSNGLIR 211

Query: 335 QSFQPVLFGMLHKP 376
             FQ   F    KP
Sbjct: 212 SRFQ--TFETFRKP 223

>AAA1_RAT (P63116) Asc-type amino acid transporter 1 (Asc-1) (D-serine|
           transporter)
          Length = 530

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +2

Query: 122 QKKGGHGTFQQGFSPSEGVDEGPSALSRRIACKK 223
           Q+ GGHG      SPS G   GP A S R+A KK
Sbjct: 12  QQPGGHGNPGPAPSPSPGPGPGPGA-SERVALKK 44

>AAA1_MOUSE (P63115) Asc-type amino acid transporter 1 (Asc-1) (D-serine|
           transporter)
          Length = 530

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +2

Query: 122 QKKGGHGTFQQGFSPSEGVDEGPSALSRRIACKK 223
           Q+ GGHG      SPS G   GP A S R+A KK
Sbjct: 12  QQPGGHGNPGPAPSPSPGPGPGPGA-SERVALKK 44

>TID_DROME (Q27237) Protein tumorous imaginal discs, mitochondrial precursor|
           (Protein lethal(2)tumorous imaginal discs) (TID56)
           (TID50)
          Length = 520

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 42/170 (24%), Positives = 64/170 (37%), Gaps = 5/170 (2%)
 Frame = +2

Query: 8   KLQNAYEVLLXSVKRKTYDDELRREELLNYFRRFQGASQKKGGHGTF-QQGFSPS----E 172
           ++  AYEVL    KR+ YD   +  E +      QG     GG G F  +GFS S     
Sbjct: 109 EVSEAYEVLSDEQKRREYDTYGQTAENIGR----QGGGFPGGGAGGFGPEGFSQSWQFRS 164

Query: 173 GVDEGPSALSRRIACKKCGDFHLWIYTGRPKLQGRWCQDCKEFHQAKDGDGWVEQSFQPV 352
            +D  P  L R+I  +  G+F                    +F  +K G G  ++    +
Sbjct: 165 SID--PEELFRKIFGE--GNFR--------------TNSFDDFADSKFGFGQAQEMVMDL 206

Query: 353 LFGMLHKPDLPHAFVCAESSIFDVTEWFSCQGMRCPPNTHKPTFPRECQF 502
            F    +       V  + ++  V +   C G +C P T     P  CQ+
Sbjct: 207 TFAQAARG------VNKDVNVNVVDQCPKCAGTKCEPGTK----PGRCQY 246

>THYX_BORBU (O50965) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase)|
          Length = 265

 Score = 25.4 bits (54), Expect(2) = 5.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 249 IQEDLSCRADGVRIAKSFIRLKMVMDGLSSHFNRSY 356
           ++EDL C+       K F  L+ + D +  H   SY
Sbjct: 103 LEEDLKCQTSSNSSEKEFKSLEKLSDKIKHHQKHSY 138



 Score = 22.7 bits (47), Expect(2) = 5.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 88  TELLQAVPGCFSKERRTWYIP 150
           T  +  V GC+S  R  +Y+P
Sbjct: 82  TARINEVSGCYSLAREEFYVP 102

>OR4K5_HUMAN (Q8NGD3) Olfactory receptor 4K5|
          Length = 323

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 297 SFIRLKMVMDGLSSHFNRSYLGCCTSPIYLMHLF 398
           SF   KM+ D LS+H   S+ G C + I+ +HLF
Sbjct: 75  SFATPKMIADFLSAHETISFSG-CIAQIFFIHLF 107

>OR4K2_HUMAN (Q8NGD2) Olfactory receptor 4K2|
          Length = 314

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 297 SFIRLKMVMDGLSSHFNRSYLGCCTSPIYLMHLF 398
           SF   KM+ D L+ H   S+ GC T  I+ +HLF
Sbjct: 75  SFATPKMITDYLTGHKTISFDGCLTQ-IFFLHLF 107

>DNAJ_OCEIH (Q8CXD3) Chaperone protein dnaJ|
          Length = 375

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = +2

Query: 8   KLQNAYEVLLXSVKRKTYDDELRREELLNYFRRFQGASQKKGGHGTFQQGFSPSEGVDEG 187
           +++ AYEVL    KR  YD           F  F G +Q  GG G     F    G    
Sbjct: 48  EVKEAYEVLSDDQKRAQYDQFGHSGPQSQGFGGFGGGAQDFGGFGDIFDMFFGGGGRSRD 107

Query: 188 PSA 196
           P+A
Sbjct: 108 PNA 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,904,970
Number of Sequences: 219361
Number of extensions: 1756197
Number of successful extensions: 4352
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4350
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)