>emb|BX000531.11| Human DNA sequence from clone DAQB-12N14 on chromosome 6 Contains the
OR2H1 gene for olfactory receptor, family 2, subfamily H,
member 1, the UBDP1 pseudogene for ubiquitin D pseudogene
1, the MAS1L gene for MAS1 oncogene-like, the RPS17P1
pseudogene for ribosomal protein S17 pseudogene 1 and the
DAQB-12N14.5 gene for a novel transcript, complete
sequence
Length = 89139
Score = 42.1 bits (21), Expect = 1.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 440 tgtcagggaatgagatgccca 460
|||||||||||||||||||||
Sbjct: 21361 tgtcagggaatgagatgccca 21381
>emb|AL645927.3| Human DNA sequence from clone XXbac-13B8 on chromosome 6 contains the
OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory
receptor, family 12, subfamily D, member 2, family 11,
subfamily A, member 1, family 10, subfamily C, member 1
and family 2, subfamily H, member 1, the OR12D1P
pseudogene for olfactory receptor, family12, subfamily D,
member 1, a diubiquitin pseudogene, the MRG gene for
MAS-related G protein-coupled receptor MRG and a ribosomal
protein S17 (RPS17) pseudogene, complete sequence
Length = 112578
Score = 42.1 bits (21), Expect = 1.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 440 tgtcagggaatgagatgccca 460
|||||||||||||||||||||
Sbjct: 75830 tgtcagggaatgagatgccca 75850
>emb|AL662869.2| Human DNA sequence from clone XXbac-128A13 on chromosome 6 contains the
OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory
receptor, family 12, subfamily D, member 2, family 11,
subfamily A, member 1, family 10, subfamily C, member 1,
family 2, subfamily H, member 1, the gene for MAS-related
G protein-coupled receptor (MRG), the OR12D1P pseudogene
for olfactory receptor, family 12, subfamily D, member 1,
a diubiquitin pseudogene and a ribosomal protein S17
(RPS17) pseudogene, complete sequence
Length = 133836
Score = 42.1 bits (21), Expect = 1.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 440 tgtcagggaatgagatgccca 460
|||||||||||||||||||||
Sbjct: 72497 tgtcagggaatgagatgccca 72517
>emb|AL445990.7| Human DNA sequence from clone RP11-103A6 on chromosome 1 Contains part
of the DNM3 gene for dynamin 3, complete sequence
Length = 42418
Score = 42.1 bits (21), Expect = 1.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 267 tgcagggcagatggtgtcagg 287
|||||||||||||||||||||
Sbjct: 39634 tgcagggcagatggtgtcagg 39654
>emb|AL161449.7| Human DNA sequence from clone RP11-382H24 on chromosome 9p22.1-23
Contains a peroxiredoxin 1 (PRDX1) pseudogene, a Sjogren
syndrome antigen B (autoantigen La) (SSB) pseudogene, the
3' end of the MPDZ gene for multiple PDZ domain protein and
a CpG island, complete sequence
Length = 169660
Score = 42.1 bits (21), Expect = 1.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 ggagggaggagctactgaact 95
|||||||||||||||||||||
Sbjct: 133201 ggagggaggagctactgaact 133221
>emb|AL109918.25|HSDJ152L7 Human DNA sequence from clone RP1-152L7 on chromosome 6p11.2-12.3
Contains three glutathione S-transferase pseudogenes, the
GSTA2 gene for glutathione S-transferase A2, the gene for a
novel protein (PTD011), a HNRNP A/B related protein
pseudogene, a SH3BGRL3-like pseudogene and CpG Islands,
complete sequence
Length = 175940
Score = 42.1 bits (21), Expect = 1.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 493 atgccagtttggcaaagcaag 513
|||||||||||||||||||||
Sbjct: 118446 atgccagtttggcaaagcaag 118466
>emb|AL133330.14| Human DNA sequence from clone RP1-68D18 on chromosome 11p12-13 Contains
part of the SLC1A2 gene for three variants of solute
carrier family 1 (glial high affinity glutamate
transporter) member 2 and part of the CD44 gene for CD44
antigen (homing function and Indian blood group system)
with five variants, complete sequence
Length = 183682
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ggttccagggtgcttctcaa 124
||||||||||||||||||||
Sbjct: 82966 ggttccagggtgcttctcaa 82985
>emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chromosome 10 Contains part
of the PARD3 gene for par-3 partitioning defective 3
homolog (C.elegans), a 40S ribosomal protein S12 (RPS12)
pseudogene and a 60S ribosomal protein L37 (RPL37)
pseudogene, complete sequence
Length = 176405
Score = 40.1 bits (20), Expect = 7.3
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 318 gtgatggatgggttgagcagtcat 341
||||||||| ||||||||||||||
Sbjct: 23901 gtgatggattggttgagcagtcat 23878
>gb|AC135019.3| Mus musculus BAC clone RP23-186D15 from 10, complete sequence
Length = 189457
Score = 40.1 bits (20), Expect = 7.3
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 270 agggcagatggtgtcaggattgca 293
||||||||||||| ||||||||||
Sbjct: 38184 agggcagatggtgacaggattgca 38207
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,655,634
Number of Sequences: 3902068
Number of extensions: 4655634
Number of successful extensions: 96275
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96122
Number of HSP's gapped (non-prelim): 153
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)