Clone Name | bags9n05 |
---|---|
Clone Library Name | barley_pub |
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 241 bits (616), Expect = 1e-63 Identities = 113/181 (62%), Positives = 139/181 (76%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 FEAVMRVRCSQG+QVQ+YSGNFCKR+PTDIDLPAID DK IMVT KHDDK Q+ ECGFQ Sbjct: 752 FEAVMRVRCSQGIQVQEYSGNFCKRIPTDIDLPAIDCDKAIMVTLKHDDKLQDGAECGFQ 811 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 CALLYTT+ G+RRIRV+N+S+PCT+ L+NLFR ADL++QF ++KQA IPS +L V+ Sbjct: 812 CALLYTTISGERRIRVLNLSIPCTNMLSNLFRSADLDSQFACMLKQAANEIPSKALPLVK 871 Query: 404 DQVTSTCINILQAYRKHCASVSSSGQXXXXXXXXXXXXXXXXXVKSIGLRNDGRVDDRSY 583 +Q T+ CI IL +YRK CA+V+S+GQ K +GLR DGR+DDRS+ Sbjct: 872 EQATNDCITILHSYRKFCATVTSTGQLILPEALKLLPLYTLALTKGVGLRMDGRIDDRSF 931 Query: 584 W 586 W Sbjct: 932 W 932
>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640| Length = 1069 Score = 217 bits (552), Expect = 3e-56 Identities = 106/181 (58%), Positives = 129/181 (71%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 FEAVMRVRCSQG+QVQ+YSGNFCKR+PTDIDLPA HDDK Q+ EC FQ Sbjct: 748 FEAVMRVRCSQGIQVQEYSGNFCKRIPTDIDLPA------------HDDKLQDGAECAFQ 795 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 CALLYTT+YG+RRIRV +SL CT+ L+NLFR ADL++QF ++KQA IPS +L V+ Sbjct: 796 CALLYTTIYGERRIRVTTLSLSCTNMLSNLFRAADLDSQFACMLKQAANEIPSKALPLVK 855 Query: 404 DQVTSTCINILQAYRKHCASVSSSGQXXXXXXXXXXXXXXXXXVKSIGLRNDGRVDDRSY 583 +Q T++CIN L AYRK CA+V+SSGQ KS+GLR DGR+DDRS+ Sbjct: 856 EQATNSCINALYAYRKFCATVTSSGQLILPEALKLFPLYTLALTKSVGLRTDGRIDDRSF 915 Query: 584 W 586 W Sbjct: 916 W 916
>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)| Length = 1094 Score = 132 bits (332), Expect = 8e-31 Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 2/182 (1%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 F+AVMRVR S G++ D+ G F TD++L +D DKT+ V FKHDD+ E + Q Sbjct: 749 FDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQ 808 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 CALLYT+ GQRR+R+ N++L C + L +L+R + + Y+ K A G+ +S + VR Sbjct: 809 CALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVR 868 Query: 404 DQVTSTCINILQAYRKHCASVSSSGQXXXXXXXXXXXXXXXXXVKSIGLRNDGRV--DDR 577 D + + C IL YRK+CAS SS+GQ +KS L+ V DDR Sbjct: 869 DTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDR 928 Query: 578 SY 583 +Y Sbjct: 929 AY 930
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 119 bits (299), Expect = 5e-27 Identities = 57/146 (39%), Positives = 89/146 (60%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 F+A+MRVR S G + D+ G TD+++ AID DK + V FKHDDK E++ Q Sbjct: 687 FDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQ 746 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 CA+LYTT+ GQRR+R+ N+ L C+S L +L++ + +A + K A + L +R Sbjct: 747 CAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIR 806 Query: 404 DQVTSTCINILQAYRKHCASVSSSGQ 481 + + + ++L YRK+CAS S++ Q Sbjct: 807 EILVNQTAHMLACYRKNCASPSAASQ 832
>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II| Length = 891 Score = 98.2 bits (243), Expect = 2e-20 Identities = 51/146 (34%), Positives = 79/146 (54%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 + +++ RCS GL+V Y GNF +R P DI+ ++D+DK++ V F +D K + FQ Sbjct: 532 YRVMLKTRCSNGLRVSKYLGNFLQRTPQDIEFGSLDADKSVTVLFSYDGKLNGALDAHFQ 591 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 A+LYTT G+RR+RV+N TS + A +E + K A I + SL Sbjct: 592 TAVLYTTPSGERRVRVVNYCCAVTSKSYDTISLAIVEPIVAVLAKIASTNIAAGSLKDTS 651 Query: 404 DQVTSTCINILQAYRKHCASVSSSGQ 481 ++ + IL +YRK A+ + GQ Sbjct: 652 VRLVEGVVKILSSYRKVAANRLTPGQ 677
>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)| (Fragment) Length = 1078 Score = 94.4 bits (233), Expect = 2e-19 Identities = 54/145 (37%), Positives = 78/145 (53%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 FEAVMR+RC++GL + + GNF R + LP ++ D V ++ + FQ Sbjct: 730 FEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQ 789 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 ALLYT+ G+RRIRV + LP STLN++F AD++A + A ++SLS R Sbjct: 790 SALLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASLSDAR 849 Query: 404 DQVTSTCINILQAYRKHCASVSSSG 478 D + + I+ L AYR S G Sbjct: 850 DALVNAVIDSLSAYRSSVLSNQQPG 874
>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)| Length = 1090 Score = 94.0 bits (232), Expect = 3e-19 Identities = 54/145 (37%), Positives = 77/145 (53%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 FEAVMR+RC++GL + + GNF R + LP ++ D V ++ + FQ Sbjct: 742 FEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQ 801 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 ALLYT+ G+RRIRV + LP STLN +F AD++A + A ++SLS R Sbjct: 802 SALLYTSSKGERRIRVHTLCLPVVSTLNEVFLGADVQAISGLLANMAVDRSVTASLSDAR 861 Query: 404 DQVTSTCINILQAYRKHCASVSSSG 478 D + + I+ L AYR S G Sbjct: 862 DALVNAVIDSLSAYRSSVLSGQQPG 886
>YIY8_SCHPO (Q9UUI5) Hypothetical protein C22F8.08 in chromosome I| Length = 926 Score = 89.0 bits (219), Expect = 1e-17 Identities = 52/138 (37%), Positives = 80/138 (57%) Frame = +2 Query: 47 EAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQC 226 EAVMRVR S GL++ + GNF R P+ D++ +V +D + FQ Sbjct: 573 EAVMRVRGSNGLRMSSFYGNFFNRSSDLCAFPSFPRDQSYVVEVVIEDTITKPF-VSFQT 631 Query: 227 ALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVRD 406 A+L+TT G+RRIRV+ ISLP T+++ +L+ AD A Y+ +A SS+L++ RD Sbjct: 632 AMLHTTCNGERRIRVLTISLPTTNSMTDLYASADQVAIAQYLTVRASEKALSSTLNEARD 691 Query: 407 QVTSTCINILQAYRKHCA 460 + S + IL+ Y+K+ A Sbjct: 692 SIISKLVEILEVYKKNLA 709
>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)| Length = 1268 Score = 85.1 bits (209), Expect = 1e-16 Identities = 49/144 (34%), Positives = 77/144 (53%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 FEAVMR+RC++GL + + GNF R + L I+ D V ++ + + FQ Sbjct: 920 FEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQ 979 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 ALLYT+ G+RRIRV + LP S+L +++ D++A + A SSSLS R Sbjct: 980 TALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDAR 1039 Query: 404 DQVTSTCINILQAYRKHCASVSSS 475 D + + ++ L AY +++ S Sbjct: 1040 DALVNAVVDSLSAYGSTVSNLQHS 1063
>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100| Length = 1038 Score = 77.4 bits (189), Expect = 3e-14 Identities = 44/135 (32%), Positives = 67/135 (49%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 +EAVMR+RC +G++ Y GNF R + LPA+D DK + ++ + FQ Sbjct: 686 WEAVMRIRCGKGIRFSSYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTSQTVYFQ 745 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 ALLYT G+RRIRV P + L ++R AD + + + A S+ L R Sbjct: 746 VALLYTASCGERRIRVHTSVAPVVTDLGEMYRQADTGSIVSLYARLAIEKSLSAKLDDAR 805 Query: 404 DQVTSTCINILQAYR 448 + + + L+ YR Sbjct: 806 NAIQQKIVKALKEYR 820
>SFB3_YEAST (P38810) SED5-binding protein 3 (SEC24-related protein 3) (Lethal| with SEC13 protein 1) Length = 929 Score = 75.9 bits (185), Expect = 9e-14 Identities = 41/144 (28%), Positives = 73/144 (50%) Frame = +2 Query: 44 FEAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQ 223 ++A+++VRCS GL V+ Y + D +P + D T+ V K+D K + T+ FQ Sbjct: 538 YQALLKVRCSTGLSVEQYYCDSSDNTDHDPIIPVLTRDTTLDVLLKYDSKIKTGTDVHFQ 597 Query: 224 CALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVR 403 ALLYT + G R++R IN S ++ + +F++ + ++K + ++R Sbjct: 598 TALLYTDIDGVRKVRSINTSGAVSNNIREIFKFINQNPVMRIMIKDVIKTLGDCDFVKIR 657 Query: 404 DQVTSTCINILQAYRKHCASVSSS 475 + + IL YR +S SS+ Sbjct: 658 RLIDDKMVEILTQYRGLVSSNSST 681
>SFB2_YEAST (P53953) SED5-binding protein 2 (SEC24-related protein 2)| Length = 876 Score = 68.9 bits (167), Expect = 1e-11 Identities = 43/135 (31%), Positives = 68/135 (50%) Frame = +2 Query: 47 EAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQC 226 EAVMRVRCS GL+ + G+F R + D++ + +D C Q Sbjct: 511 EAVMRVRCSTGLRATSFFGHFFNRSSDLCAFSTMPRDQSYLFGISIEDSLMAEY-CYLQV 569 Query: 227 ALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVRD 406 + L T G+RRIRV+ ++LP + + +F AD A ++ + A +SS+ RD Sbjct: 570 STLLTLNTGERRIRVMTLALPTSESAREVFASADQLAITDFMTQNAVTKALNSSMYSARD 629 Query: 407 QVTSTCINILQAYRK 451 +T + +IL AY+K Sbjct: 630 FITKSLEDILNAYKK 644
>SEC24_YEAST (P40482) Protein transport protein Sec24 (Abnormal nuclear| morphology 1) Length = 926 Score = 56.2 bits (134), Expect = 7e-08 Identities = 39/144 (27%), Positives = 69/144 (47%) Frame = +2 Query: 47 EAVMRVRCSQGLQVQDYSGNFCKRVPTDIDLPAIDSDKTIMVTFKHDDKFQENTECGFQC 226 E VMR R S GL++ + G+F R + D++ + D+ + C Q Sbjct: 555 ETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMADY-CYVQV 613 Query: 227 ALLYTTVYGQRRIRVINISLPCTSTLNNLFRYADLEAQFTYVVKQAGIGIPSSSLSQVRD 406 A+L + QRRIR+I +++P T +L ++ AD A ++ +A +SSL R Sbjct: 614 AVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARV 673 Query: 407 QVTSTCINILQAYRKHCASVSSSG 478 + + +IL Y+K +++G Sbjct: 674 LINKSVQDILATYKKEIVVSNTAG 697
>CMAH_PONPY (Q8MJC6) Cytidine monophosphate-N-acetylneuraminic acid hydroxylase| (EC 1.14.18.2) (CMP-N-acetylneuraminate monooxygenase) (CMP-N-acetylneuraminic acid hydroxylase) (CMP-NeuAc hydroxylase) (CMP-Neu5Ac hydroxylase) (Fragment) Length = 585 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = -3 Query: 587 PNRIDRLLSHHSSVLCF*PRPGYT--KAEVLKPPEES 483 PN ++ L+ +S V+ + PRPG T A +LK P +S Sbjct: 376 PNELNNLIKKNSDVITWTPRPGATLDLARMLKDPTDS 412
>PYHD_NPVLD (P20587) Polyhedrin (Major occlusion protein)| Length = 245 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/57 (33%), Positives = 29/57 (50%) Frame = -3 Query: 599 RQQRPNRIDRLLSHHSSVLCF*PRPGYTKAEVLKPPEESTVQKNSQMHNVFGRPGEC 429 R RPNR + ++ H+ + C GY EV++ E STV+ N ++ R G C Sbjct: 126 RPTRPNRCYKFVAQHA-LRC---DEGYVPHEVIRIVEPSTVENNEYRISLAKRGGGC 178
>NUAM_SOLTU (Q43644) NADH-ubiquinone oxidoreductase 75 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complex I subunit) Length = 738 Score = 29.6 bits (65), Expect = 7.5 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +2 Query: 362 AGIGIPSSSLSQVRDQVTSTCINILQAYRKHCASVSSS 475 AG+G+P SL +R ++ + N+L+ + A+ S+S Sbjct: 658 AGVGLPYDSLGAIRSRIKTVAPNLLEVDERQPATFSTS 695
>CMAH_HUMAN (Q9Y471) Cytidine monophosphate-N-acetylneuraminic acid| hydroxylase-like protein (CMP-NeuAc hydroxylase-like protein) Length = 486 Score = 29.6 bits (65), Expect = 7.5 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 12/53 (22%) Frame = -3 Query: 587 PNRIDRLLSHHSSVLCF*PRPGYT------------KAEVLKPPEESTVQKNS 465 PN ++ L+ +S V+ + PRPG T +++PPE + + K+S Sbjct: 277 PNELNNLIKKNSDVITWTPRPGATLDLGRMLKDRTDSKGIIEPPEGTKIYKDS 329
>CMAH_PANTR (O97598) Cytidine monophosphate-N-acetylneuraminic acid hydroxylase| (EC 1.14.18.2) (CMP-N-acetylneuraminate monooxygenase) (CMP-N-acetylneuraminic acid hydroxylase) (CMP-NeuAc hydroxylase) (CMP-Neu5Ac hydroxylase) Length = 590 Score = 29.6 bits (65), Expect = 7.5 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 12/53 (22%) Frame = -3 Query: 587 PNRIDRLLSHHSSVLCF*PRPGYT------------KAEVLKPPEESTVQKNS 465 PN ++ L+ +S V+ + PRPG T +++PPE + + K+S Sbjct: 381 PNELNNLIKKNSDVITWTPRPGATLDLGRMLKDPTDSKGIIEPPEGTKIYKDS 433
>CMAH_PANPA (Q8MJD0) Cytidine monophosphate-N-acetylneuraminic acid hydroxylase| (EC 1.14.18.2) (CMP-N-acetylneuraminate monooxygenase) (CMP-N-acetylneuraminic acid hydroxylase) (CMP-NeuAc hydroxylase) (CMP-Neu5Ac hydroxylase) (Fragment) Length = 600 Score = 29.6 bits (65), Expect = 7.5 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 12/53 (22%) Frame = -3 Query: 587 PNRIDRLLSHHSSVLCF*PRPGYT------------KAEVLKPPEESTVQKNS 465 PN ++ L+ +S V+ + PRPG T +++PPE + + K+S Sbjct: 376 PNELNNLIKKNSDVITWTPRPGATLDLGRMLKDPTDSKGIIEPPEGTKIYKDS 428
>CMAH_MACMU (Q9TUJ2) Cytidine monophosphate-N-acetylneuraminic acid hydroxylase| (EC 1.14.18.2) (CMP-N-acetylneuraminate monooxygenase) (CMP-N-acetylneuraminic acid hydroxylase) (CMP-NeuAc hydroxylase) (CMP-Neu5Ac hydroxylase) Length = 590 Score = 29.6 bits (65), Expect = 7.5 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 12/53 (22%) Frame = -3 Query: 587 PNRIDRLLSHHSSVLCF*PRPGYT------------KAEVLKPPEESTVQKNS 465 PN ++ L+ +S V+ + PRPG T +++PPE + + K+S Sbjct: 381 PNELNNLIKKNSDVITWTPRPGATLDLGRMLKDPTDSKGIIEPPEGTKIYKDS 433
>CMAH_GORGO (Q8MJC8) Cytidine monophosphate-N-acetylneuraminic acid hydroxylase| (EC 1.14.18.2) (CMP-N-acetylneuraminate monooxygenase) (CMP-N-acetylneuraminic acid hydroxylase) (CMP-NeuAc hydroxylase) (CMP-Neu5Ac hydroxylase) (Fragment) Length = 600 Score = 29.6 bits (65), Expect = 7.5 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 12/53 (22%) Frame = -3 Query: 587 PNRIDRLLSHHSSVLCF*PRPGYT------------KAEVLKPPEESTVQKNS 465 PN ++ L+ +S V+ + PRPG T +++PPE + + K+S Sbjct: 376 PNELNNLIKKNSDVITWTPRPGATLDLGRMLKDPTDSKGIIEPPEGTKIYKDS 428 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,631,093 Number of Sequences: 219361 Number of extensions: 1832384 Number of successful extensions: 4077 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4071 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)