ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9n05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H04, full insert sequence Length = 2175 Score = 216 bits (109), Expect = 7e-53 Identities = 253/301 (84%) Strand = Plus / Plus Query: 47 gaggctgtcatgcgtgtcaggtgcagtcaggggcttcaagttcaagactattctggcaac 106 |||||||| ||||||||||| ||||| |||||||| |||||||| ||||||| |||||| Sbjct: 701 gaggctgttatgcgtgtcagatgcagccaggggctccaagttcaggactattttggcaat 760 Query: 107 ttctgcaagcgtgttcctactgatattgatttgcctgctattgactctgacaaaaccata 166 ||||||||||||||||||||||| |||||| | || | ||||| ||||||||||| ||| Sbjct: 761 ttctgcaagcgtgttcctactgacattgatcttccatcgattgattctgacaaaactata 820 Query: 167 atggttaccttcaagcatgatgataagtttcaggagaatacagagtgtggttttcagtgt 226 ||||| ||||| ||||| ||||| ||||| ||||| ||| |||| |||||||| ||||| Sbjct: 821 atggtcacctttaagcacgatgacaagttacaggaaaattcagaatgtggtttccagtgc 880 Query: 227 gcacttctttacaccacggtttatgggcaaagaaggatacgggtcataaatatttcactt 286 || ||||| ||||| || || ||||| ||||||||||| || || || || | ||||| Sbjct: 881 gctcttctctacactactgtatatggacaaagaaggattcgagttatgaacctctcactc 940 Query: 287 ccatgcacaagcacgctcaacaaccttttccgatatgctgatctggaagcacagttcaca 346 |||||||||| || ||||| || || ||||||||||||||| ||||| ||||||| ||| Sbjct: 941 ccatgcacaaacatgctcagtaatctcttccgatatgctgatttggaaacacagtttaca 1000 Query: 347 t 347 | Sbjct: 1001 t 1001 Score = 75.8 bits (38), Expect = 2e-10 Identities = 92/110 (83%) Strand = Plus / Plus Query: 410 gtaacaagtacatgcatcaacattctccaggcctaccgaaaacattgtgcatctgtgagt 469 ||||||| |||||| || || ||||||||| ||||||| ||| ||||||||||||| || Sbjct: 1064 gtaacaaatacatgtataaatattctccagtcctaccgtaaatattgtgcatctgtaagc 1123 Query: 470 tcttctggacagttgattcttccggaggctttaaaacttctgcctttgta 519 || ||||| |||||||| ||||| ||||| | ||||| ||||| ||||| Sbjct: 1124 tcatctgggcagttgatccttccagaggcactcaaactcctgcccttgta 1173
>gb|BT016644.1| Zea mays clone Contig477 mRNA sequence Length = 1961 Score = 168 bits (85), Expect = 1e-38 Identities = 246/296 (83%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 1 cttcaatgatctcagnatggaatgtcactagnaccgcagggnatttgaggctgtcatgcg 60 ||||||||||||||| ||||||| ||| ||| ||| ||||| ||||||||||| ||||| Sbjct: 225 cttcaatgatctcag-atggaatatcagtag-accccagggt-tttgaggctgttatgcg 281 Query: 61 tgtcaggtgcagtcaggggcttcaagttcaagactattctggcaacttctgcaagcgtgt 120 ||| |||||||||||||| || |||||||| ||||||| |||||| |||||||||||||| Sbjct: 282 tgtaaggtgcagtcagggtctccaagttcaggactattatggcaatttctgcaagcgtgt 341 Query: 121 tcctactgatattgatttgcctgctattgactctgacaaaaccataatggttaccttcaa 180 ||| || ||||||||| | || || ||||| ||||||||||| | ||||| || || || Sbjct: 342 tcccaccgatattgatcttccagcgattgattctgacaaaactgtgatggtcacgtttaa 401 Query: 181 gcatgatgataagtttcaggagaatacagagtgtggttttcagtgtgcacttctttacac 240 ||||||||| ||||| | || ||| || ||||| || |||||||||||||| || || Sbjct: 402 gcatgatgacaagttacctgaaaatgtggaatgtggcttccagtgtgcacttctctatac 461 Query: 241 cacggtttatgggcaaagaaggatacgggtcataaatatttcacttccatgcacaa 296 || || ||||| ||||| ||||| || |||||||| |||||||| ||||||||| Sbjct: 462 tactgtatatggacaaaggaggatccgagtcataaacctttcactttcatgcacaa 517 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 412 aacaagtacatgcatcaacattctccaggcctaccgaaaacattgtgcatctgtgagttc 471 ||||| ||||||||| || ||||| || | ||||| ||||| ||||||||||| | ||| Sbjct: 633 aacaaatacatgcataaatattcttcaatcttaccgcaaacactgtgcatctgtaacttc 692 Query: 472 ttctggacagttgattcttccggaggctttaaaacttctgcctttgtatac 522 || || ||||||||||| || |||||| ||||||| ||||| || ||||| Sbjct: 693 atcagggcagttgattctcccagaggctctaaaactgctgcccttatatac 743
>gb|AY107397.1| Zea mays PCO076624 mRNA sequence Length = 2256 Score = 161 bits (81), Expect = 3e-36 Identities = 245/296 (82%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 1 cttcaatgatctcagnatggaatgtcactagnaccgcagggnatttgaggctgtcatgcg 60 ||||||||||||||| ||||||| ||| ||| ||| ||||| ||||||||||| ||||| Sbjct: 762 cttcaatgatctcag-atggaatatcagtag-accccagggt-tttgaggctgttatgcg 818 Query: 61 tgtcaggtgcagtcaggggcttcaagttcaagactattctggcaacttctgcaagcgtgt 120 ||| |||||||||||||| || |||||||| ||||||| |||||| |||||||||||||| Sbjct: 819 tgtaaggtgcagtcagggtctccaagttcaggactattttggcaatttctgcaagcgtgt 878 Query: 121 tcctactgatattgatttgcctgctattgactctgacaaaaccataatggttaccttcaa 180 ||| ||||| |||||| | || || ||||| || |||||||| | ||||| || || || Sbjct: 879 tcccactgacattgatcttccagcgattgattccgacaaaactgtgatggtcacgtttaa 938 Query: 181 gcatgatgataagtttcaggagaatacagagtgtggttttcagtgtgcacttctttacac 240 ||||||||| ||||| | || ||| || ||||| || |||||||||||||| || || Sbjct: 939 gcatgatgacaagttacctgaaaatgtggaatgtggcttccagtgtgcacttctctatac 998 Query: 241 cacggtttatgggcaaagaaggatacgggtcataaatatttcacttccatgcacaa 296 || || ||||| ||||| ||||| || |||||||| |||||||| ||||||||| Sbjct: 999 tactgtatatggacaaaggaggatccgagtcataaacctttcactttcatgcacaa 1054 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 412 aacaagtacatgcatcaacattctccaggcctaccgaaaacattgtgcatctgtgagttc 471 ||||| ||||||||| || ||||| || | ||||| ||||| ||||||||||| | ||| Sbjct: 1170 aacaaatacatgcataaatattcttcaatcttaccgcaaacactgtgcatctgtaacttc 1229 Query: 472 ttctggacagttgattcttccggaggctttaaaacttctgcctttgtatac 522 || || ||||||||||| || |||||| ||||||| ||||| || ||||| Sbjct: 1230 atcagggcagttgattctcccagaggctctaaaactgctgcccttatatac 1280
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 159 bits (80), Expect = 1e-35 Identities = 128/144 (88%) Strand = Plus / Minus Query: 219 ttcagtgtgcacttctttacaccacggtttatgggcaaagaaggatacgggtcataaata 278 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct: 13862328 ttcagtgtgcacttctttacacgacggtatatggacaaagaaggatacgggtcataaacc 13862269 Query: 279 tttcacttccatgcacaagcacgctcaacaaccttttccgatatgctgatctggaagcac 338 | |||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||| Sbjct: 13862268 tctcactttcatgcacaaatgtgctcagcaaccttttccgatatgctgatctggaaacac 13862209 Query: 339 agttcacatatgttgttaagcaag 362 |||| || |||||||| ||||||| Sbjct: 13862208 agtttacctatgttgtgaagcaag 13862185 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Minus Query: 373 cattccatcaagttctctgtcccaagtaagggaccaggtaacaagtacatgcatcaacat 432 ||||||||||| |||| |||||||| |||||||| || || || ||||||||||| || Sbjct: 13861620 cattccatcaacacctctatcccaagttagggaccaagtgacgagcacatgcatcaatat 13861561 Query: 433 tctccaggcctaccgaaaacattgtgcatctgtgagttcttctggacagttgattcttcc 492 |||||| | ||||||||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct: 13861560 actccagtcttaccgaaaacattgtgcatctgtaagttcttcgggacaattgattcttcc 13861501 Query: 493 ggaggctttaaaacttctgcctttgtatac 522 |||||| |||| || |||||||||||||| Sbjct: 13861500 tgaggctctaaagctcctgcctttgtatac 13861471 Score = 99.6 bits (50), Expect = 1e-17 Identities = 59/62 (95%) Strand = Plus / Minus Query: 75 aggggcttcaagttcaagactattctggcaacttctgcaagcgtgttcctactgatattg 134 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 13863724 agggacttcaagttcaagactattctggcaacttctgccggcgtgttcctactgatattg 13863665 Query: 135 at 136 || Sbjct: 13863664 at 13863663 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 146 attgactctgacaaaaccataatggttaccttcaagcatgatgataagtttcaggagaat 205 |||||||| ||||||||||||||||| ||||| ||||||||||| || || ||||||||| Sbjct: 13863153 attgactcggacaaaaccataatggtcacctttaagcatgatgacaaattgcaggagaat 13863094 Query: 206 acagagtgtg 215 |||| |||| Sbjct: 13863093 tcagaatgtg 13863084 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/74 (90%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 2 ttcaatgatctcagnatggaatgtcactagnaccgcagggnatttgaggctgtcatgcgt 61 |||||||||||||| ||||||| ||| ||| ||| ||||| ||||||||||||||||||| Sbjct: 13863877 ttcaatgatctcag-atggaatatcagtag-accccaggg-atttgaggctgtcatgcgt 13863821 Query: 62 gtcaggtgcagtca 75 || ||||||||||| Sbjct: 13863820 gtgaggtgcagtca 13863807 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 549 tgaggaatgatgggagagtagacgatcgatcctattgggtctctgttgtctcctcagttt 608 |||||| |||||||||| | || ||||| ||||||||||| || |||||| ||| ||| Sbjct: 13861354 tgaggactgatgggagattggatgatcggtcctattgggtgtcaactgtctcttcaattt 13861295 Query: 609 ctgtgttattagcc 622 |||||||| ||||| Sbjct: 13861294 ctgtgttactagcc 13861281
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 159 bits (80), Expect = 1e-35 Identities = 128/144 (88%) Strand = Plus / Minus Query: 219 ttcagtgtgcacttctttacaccacggtttatgggcaaagaaggatacgggtcataaata 278 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct: 13816608 ttcagtgtgcacttctttacacgacggtatatggacaaagaaggatacgggtcataaacc 13816549 Query: 279 tttcacttccatgcacaagcacgctcaacaaccttttccgatatgctgatctggaagcac 338 | |||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||| Sbjct: 13816548 tctcactttcatgcacaaatgtgctcagcaaccttttccgatatgctgatctggaaacac 13816489 Query: 339 agttcacatatgttgttaagcaag 362 |||| || |||||||| ||||||| Sbjct: 13816488 agtttacctatgttgtgaagcaag 13816465 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Minus Query: 373 cattccatcaagttctctgtcccaagtaagggaccaggtaacaagtacatgcatcaacat 432 ||||||||||| |||| |||||||| |||||||| || || || ||||||||||| || Sbjct: 13815900 cattccatcaacacctctatcccaagttagggaccaagtgacgagcacatgcatcaatat 13815841 Query: 433 tctccaggcctaccgaaaacattgtgcatctgtgagttcttctggacagttgattcttcc 492 |||||| | ||||||||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct: 13815840 actccagtcttaccgaaaacattgtgcatctgtaagttcttcgggacaattgattcttcc 13815781 Query: 493 ggaggctttaaaacttctgcctttgtatac 522 |||||| |||| || |||||||||||||| Sbjct: 13815780 tgaggctctaaagctcctgcctttgtatac 13815751 Score = 99.6 bits (50), Expect = 1e-17 Identities = 59/62 (95%) Strand = Plus / Minus Query: 75 aggggcttcaagttcaagactattctggcaacttctgcaagcgtgttcctactgatattg 134 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 13818004 agggacttcaagttcaagactattctggcaacttctgccggcgtgttcctactgatattg 13817945 Query: 135 at 136 || Sbjct: 13817944 at 13817943 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 146 attgactctgacaaaaccataatggttaccttcaagcatgatgataagtttcaggagaat 205 |||||||| ||||||||||||||||| ||||| ||||||||||| || || ||||||||| Sbjct: 13817433 attgactcggacaaaaccataatggtcacctttaagcatgatgacaaattgcaggagaat 13817374 Query: 206 acagagtgtg 215 |||| |||| Sbjct: 13817373 tcagaatgtg 13817364 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/74 (90%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 2 ttcaatgatctcagnatggaatgtcactagnaccgcagggnatttgaggctgtcatgcgt 61 |||||||||||||| ||||||| ||| ||| ||| ||||| ||||||||||||||||||| Sbjct: 13818157 ttcaatgatctcag-atggaatatcagtag-accccaggg-atttgaggctgtcatgcgt 13818101 Query: 62 gtcaggtgcagtca 75 || ||||||||||| Sbjct: 13818100 gtgaggtgcagtca 13818087 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 549 tgaggaatgatgggagagtagacgatcgatcctattgggtctctgttgtctcctcagttt 608 |||||| |||||||||| | || ||||| ||||||||||| || |||||| ||| ||| Sbjct: 13815634 tgaggactgatgggagattggatgatcggtcctattgggtgtcaactgtctcttcaattt 13815575 Query: 609 ctgtgttattagcc 622 |||||||| ||||| Sbjct: 13815574 ctgtgttactagcc 13815561
>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 50021 Score = 159 bits (80), Expect = 1e-35 Identities = 128/144 (88%) Strand = Plus / Minus Query: 219 ttcagtgtgcacttctttacaccacggtttatgggcaaagaaggatacgggtcataaata 278 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct: 31131 ttcagtgtgcacttctttacacgacggtatatggacaaagaaggatacgggtcataaacc 31072 Query: 279 tttcacttccatgcacaagcacgctcaacaaccttttccgatatgctgatctggaagcac 338 | |||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||| Sbjct: 31071 tctcactttcatgcacaaatgtgctcagcaaccttttccgatatgctgatctggaaacac 31012 Query: 339 agttcacatatgttgttaagcaag 362 |||| || |||||||| ||||||| Sbjct: 31011 agtttacctatgttgtgaagcaag 30988 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Minus Query: 373 cattccatcaagttctctgtcccaagtaagggaccaggtaacaagtacatgcatcaacat 432 ||||||||||| |||| |||||||| |||||||| || || || ||||||||||| || Sbjct: 30423 cattccatcaacacctctatcccaagttagggaccaagtgacgagcacatgcatcaatat 30364 Query: 433 tctccaggcctaccgaaaacattgtgcatctgtgagttcttctggacagttgattcttcc 492 |||||| | ||||||||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct: 30363 actccagtcttaccgaaaacattgtgcatctgtaagttcttcgggacaattgattcttcc 30304 Query: 493 ggaggctttaaaacttctgcctttgtatac 522 |||||| |||| || |||||||||||||| Sbjct: 30303 tgaggctctaaagctcctgcctttgtatac 30274 Score = 99.6 bits (50), Expect = 1e-17 Identities = 59/62 (95%) Strand = Plus / Minus Query: 75 aggggcttcaagttcaagactattctggcaacttctgcaagcgtgttcctactgatattg 134 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 32527 agggacttcaagttcaagactattctggcaacttctgccggcgtgttcctactgatattg 32468 Query: 135 at 136 || Sbjct: 32467 at 32466 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 146 attgactctgacaaaaccataatggttaccttcaagcatgatgataagtttcaggagaat 205 |||||||| ||||||||||||||||| ||||| ||||||||||| || || ||||||||| Sbjct: 31956 attgactcggacaaaaccataatggtcacctttaagcatgatgacaaattgcaggagaat 31897 Query: 206 acagagtgtg 215 |||| |||| Sbjct: 31896 tcagaatgtg 31887 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/74 (90%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 2 ttcaatgatctcagnatggaatgtcactagnaccgcagggnatttgaggctgtcatgcgt 61 |||||||||||||| ||||||| ||| ||| ||| ||||| ||||||||||||||||||| Sbjct: 32680 ttcaatgatctcag-atggaatatcagtag-accccaggg-atttgaggctgtcatgcgt 32624 Query: 62 gtcaggtgcagtca 75 || ||||||||||| Sbjct: 32623 gtgaggtgcagtca 32610 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 549 tgaggaatgatgggagagtagacgatcgatcctattgggtctctgttgtctcctcagttt 608 |||||| |||||||||| | || ||||| ||||||||||| || |||||| ||| ||| Sbjct: 30157 tgaggactgatgggagattggatgatcggtcctattgggtgtcaactgtctcttcaattt 30098 Query: 609 ctgtgttattagcc 622 |||||||| ||||| Sbjct: 30097 ctgtgttactagcc 30084
>gb|BT016851.1| Zea mays clone Contig684 mRNA sequence Length = 1054 Score = 137 bits (69), Expect = 5e-29 Identities = 227/276 (82%), Gaps = 3/276 (1%) Strand = Plus / Plus Query: 1 cttcaatgatctcagnatggaatgtcactagnaccgcagggnatttgaggctgtcatgcg 60 ||||||||||||||| ||||||| ||| ||| ||| ||||| ||||||||||| ||||| Sbjct: 594 cttcaatgatctcag-atggaatatcagtag-accccagggt-tttgaggctgttatgcg 650 Query: 61 tgtcaggtgcagtcaggggcttcaagttcaagactattctggcaacttctgcaagcgtgt 120 ||| |||||||||||||| || |||||||| ||||||| |||||| |||||||||||||| Sbjct: 651 tgtaaggtgcagtcagggtctccaagttcaggactattatggcaatttctgcaagcgtgt 710 Query: 121 tcctactgatattgatttgcctgctattgactctgacaaaaccataatggttaccttcaa 180 ||| || || |||||| | || || ||||| || |||||||| | ||||| || || || Sbjct: 711 tcccaccgacattgatcttccagcgattgattccgacaaaactgtgatggtcacgtttaa 770 Query: 181 gcatgatgataagtttcaggagaatacagagtgtggttttcagtgtgcacttctttacac 240 ||||||||| ||||| | || ||| || ||||| || |||||||||||||| || || Sbjct: 771 gcatgatgacaagttaccagaaaatgtggaatgtggcttccagtgtgcacttctctatac 830 Query: 241 cacggtttatgggcaaagaaggatacgggtcataaa 276 || || ||||| ||||| ||||| || |||||||| Sbjct: 831 tactgtatatggacaaaggaggatccgagtcataaa 866
>emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144552 Score = 99.6 bits (50), Expect = 1e-17 Identities = 59/62 (95%) Strand = Plus / Minus Query: 75 aggggcttcaagttcaagactattctggcaacttctgcaagcgtgttcctactgatattg 134 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 352 agggacttcaagttcaagactattctggcaacttctgccggcgtgttcctactgatattg 293 Query: 135 at 136 || Sbjct: 292 at 291 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/74 (90%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 2 ttcaatgatctcagnatggaatgtcactagnaccgcagggnatttgaggctgtcatgcgt 61 |||||||||||||| ||||||| ||| ||| ||| ||||| ||||||||||||||||||| Sbjct: 505 ttcaatgatctcag-atggaatatcagtag-accccaggg-atttgaggctgtcatgcgt 449 Query: 62 gtcaggtgcagtca 75 || ||||||||||| Sbjct: 448 gtgaggtgcagtca 435
>ref|NM_114302.2| Arabidopsis thaliana CEF; protein binding / transporter AT3G44340 (CEF) transcript variant AT3G44340.1 mRNA, complete cds Length = 3723 Score = 91.7 bits (46), Expect = 3e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 44 tttgaggctgtcatgcgtgtcaggtgcagtcaggggcttcaagttcaagactattctggc 103 ||||||||||||||||| ||||| ||||||||||| ||||||| ||||| || || || Sbjct: 2381 tttgaggctgtcatgcgagtcagatgcagtcagggtattcaagtgcaagaatactcaggg 2440 Query: 104 aacttctgcaagcgtgttcctactgatattgatttgcctgctattgactctgacaaaacc 163 |||||||| ||||| | || ||||| || ||| | ||||| ||||||| ||||||| | Sbjct: 2441 aacttctgtaagcgcataccaactgacatcgatctacctgcgattgactgtgacaaagct 2500 Query: 164 ataatggttaccttcaagcatgatga 189 |||||||| || || ||||||||||| Sbjct: 2501 ataatggtgacattaaagcatgatga 2526
>ref|NM_001035731.1| Arabidopsis thaliana CEF; protein binding / transporter AT3G44340 (CEF) transcript variant AT3G44340.2 mRNA, complete cds Length = 3803 Score = 91.7 bits (46), Expect = 3e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 44 tttgaggctgtcatgcgtgtcaggtgcagtcaggggcttcaagttcaagactattctggc 103 ||||||||||||||||| ||||| ||||||||||| ||||||| ||||| || || || Sbjct: 2381 tttgaggctgtcatgcgagtcagatgcagtcagggtattcaagtgcaagaatactcaggg 2440 Query: 104 aacttctgcaagcgtgttcctactgatattgatttgcctgctattgactctgacaaaacc 163 |||||||| ||||| | || ||||| || ||| | ||||| ||||||| ||||||| | Sbjct: 2441 aacttctgtaagcgcataccaactgacatcgatctacctgcgattgactgtgacaaagct 2500 Query: 164 ataatggttaccttcaagcatgatga 189 |||||||| || || ||||||||||| Sbjct: 2501 ataatggtgacattaaagcatgatga 2526
>emb|AJ251579.1|ATH251579 Arabidopsis thaliana mRNA for cef protein (cef gene) Length = 3658 Score = 91.7 bits (46), Expect = 3e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 44 tttgaggctgtcatgcgtgtcaggtgcagtcaggggcttcaagttcaagactattctggc 103 ||||||||||||||||| ||||| ||||||||||| ||||||| ||||| || || || Sbjct: 2366 tttgaggctgtcatgcgagtcagatgcagtcagggtattcaagtgcaagaatactcaggg 2425 Query: 104 aacttctgcaagcgtgttcctactgatattgatttgcctgctattgactctgacaaaacc 163 |||||||| ||||| | || ||||| || ||| | ||||| ||||||| ||||||| | Sbjct: 2426 aacttctgtaagcgcataccaactgacatcgatctacctgcgattgactgtgacaaagct 2485 Query: 164 ataatggttaccttcaagcatgatga 189 |||||||| || || ||||||||||| Sbjct: 2486 ataatggtgacattaaagcatgatga 2511
>gb|BT005737.1| Arabidopsis thaliana clone RAFL15-37-G11 (R20941) At4g32640 mRNA, partial sequence Length = 3008 Score = 91.7 bits (46), Expect = 3e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 44 tttgaggctgtcatgcgtgtcaggtgcagtcaggggcttcaagttcaagactattctggc 103 ||||||||||||||||| ||||| ||||| ||||| ||||||| ||||| || ||||| Sbjct: 1555 tttgaggctgtcatgcgagtcagatgcagccagggtattcaagtgcaagaatactctggg 1614 Query: 104 aacttctgcaagcgtgttcctactgatattgatttgcctgctattgactctgacaaaacc 163 || |||||||| || |||| ||||| |||||| | || || ||||||| ||||||| || Sbjct: 1615 aatttctgcaaacgcattccaactgacattgatctaccagcgattgactgtgacaaagcc 1674 Query: 164 ataatggttaccttcaagcatgatga 189 ||||||| || || ||||||||||| Sbjct: 1675 gtaatggtaacgttaaagcatgatga 1700
>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078f20, complete sequence Length = 151042 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 73 tcaggggcttcaagttcaagactattctggcaacttctgcaagcgtgttcctactgatat 132 ||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||| || Sbjct: 84255 tcaggggctccaagttcaggactattttggcaatttctgcaagcgtgttcctactgacat 84314 Query: 133 tgat 136 |||| Sbjct: 84315 tgat 84318 Score = 75.8 bits (38), Expect = 2e-10 Identities = 92/110 (83%) Strand = Plus / Plus Query: 410 gtaacaagtacatgcatcaacattctccaggcctaccgaaaacattgtgcatctgtgagt 469 ||||||| |||||| || || ||||||||| ||||||| ||| ||||||||||||| || Sbjct: 86472 gtaacaaatacatgtataaatattctccagtcctaccgtaaatattgtgcatctgtaagc 86531 Query: 470 tcttctggacagttgattcttccggaggctttaaaacttctgcctttgta 519 || ||||| |||||||| ||||| ||||| | ||||| ||||| ||||| Sbjct: 86532 tcatctgggcagttgatccttccagaggcactcaaactcctgcccttgta 86581 Score = 69.9 bits (35), Expect = 9e-09 Identities = 107/131 (81%) Strand = Plus / Plus Query: 217 ttttcagtgtgcacttctttacaccacggtttatgggcaaagaaggatacgggtcataaa 276 ||||||||| || ||||| ||||| || || ||||| ||||||||||| || || || || Sbjct: 86112 ttttcagtgcgctcttctctacactactgtatatggacaaagaaggattcgagttatgaa 86171 Query: 277 tatttcacttccatgcacaagcacgctcaacaaccttttccgatatgctgatctggaagc 336 | ||||| |||||||||| || ||||| || || ||||||||||||||| ||||| | Sbjct: 86172 cctctcactcccatgcacaaacatgctcagtaatctcttccgatatgctgatttggaaac 86231 Query: 337 acagttcacat 347 |||||| |||| Sbjct: 86232 acagtttacat 86242 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 146 attgactctgacaaaaccataatggttaccttcaagcatgatgataagtttcaggagaat 205 ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||| Sbjct: 85156 attgattctgacaaaactataatggtcacctttaagcacgatgacaagttacaggaaaat 85215 Query: 206 acagagtgtggttt 219 |||| |||||||| Sbjct: 85216 tcagaatgtggttt 85229
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 73 tcaggggcttcaagttcaagactattctggcaacttctgcaagcgtgttcctactgatat 132 ||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||| || Sbjct: 16343820 tcaggggctccaagttcaggactattttggcaatttctgcaagcgtgttcctactgacat 16343879 Query: 133 tgat 136 |||| Sbjct: 16343880 tgat 16343883 Score = 75.8 bits (38), Expect = 2e-10 Identities = 92/110 (83%) Strand = Plus / Plus Query: 410 gtaacaagtacatgcatcaacattctccaggcctaccgaaaacattgtgcatctgtgagt 469 ||||||| |||||| || || ||||||||| ||||||| ||| ||||||||||||| || Sbjct: 16346037 gtaacaaatacatgtataaatattctccagtcctaccgtaaatattgtgcatctgtaagc 16346096 Query: 470 tcttctggacagttgattcttccggaggctttaaaacttctgcctttgta 519 || ||||| |||||||| ||||| ||||| | ||||| ||||| ||||| Sbjct: 16346097 tcatctgggcagttgatccttccagaggcactcaaactcctgcccttgta 16346146 Score = 69.9 bits (35), Expect = 9e-09 Identities = 107/131 (81%) Strand = Plus / Plus Query: 217 ttttcagtgtgcacttctttacaccacggtttatgggcaaagaaggatacgggtcataaa 276 ||||||||| || ||||| ||||| || || ||||| ||||||||||| || || || || Sbjct: 16345677 ttttcagtgcgctcttctctacactactgtatatggacaaagaaggattcgagttatgaa 16345736 Query: 277 tatttcacttccatgcacaagcacgctcaacaaccttttccgatatgctgatctggaagc 336 | ||||| |||||||||| || ||||| || || ||||||||||||||| ||||| | Sbjct: 16345737 cctctcactcccatgcacaaacatgctcagtaatctcttccgatatgctgatttggaaac 16345796 Query: 337 acagttcacat 347 |||||| |||| Sbjct: 16345797 acagtttacat 16345807 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 146 attgactctgacaaaaccataatggttaccttcaagcatgatgataagtttcaggagaat 205 ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||| Sbjct: 16344721 attgattctgacaaaactataatggtcacctttaagcacgatgacaagttacaggaaaat 16344780 Query: 206 acagagtgtggttt 219 |||| |||||||| Sbjct: 16344781 tcagaatgtggttt 16344794
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 73 tcaggggcttcaagttcaagactattctggcaacttctgcaagcgtgttcctactgatat 132 ||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||| || Sbjct: 16433799 tcaggggctccaagttcaggactattttggcaatttctgcaagcgtgttcctactgacat 16433858 Query: 133 tgat 136 |||| Sbjct: 16433859 tgat 16433862 Score = 75.8 bits (38), Expect = 2e-10 Identities = 92/110 (83%) Strand = Plus / Plus Query: 410 gtaacaagtacatgcatcaacattctccaggcctaccgaaaacattgtgcatctgtgagt 469 ||||||| |||||| || || ||||||||| ||||||| ||| ||||||||||||| || Sbjct: 16436016 gtaacaaatacatgtataaatattctccagtcctaccgtaaatattgtgcatctgtaagc 16436075 Query: 470 tcttctggacagttgattcttccggaggctttaaaacttctgcctttgta 519 || ||||| |||||||| ||||| ||||| | ||||| ||||| ||||| Sbjct: 16436076 tcatctgggcagttgatccttccagaggcactcaaactcctgcccttgta 16436125 Score = 69.9 bits (35), Expect = 9e-09 Identities = 107/131 (81%) Strand = Plus / Plus Query: 217 ttttcagtgtgcacttctttacaccacggtttatgggcaaagaaggatacgggtcataaa 276 ||||||||| || ||||| ||||| || || ||||| ||||||||||| || || || || Sbjct: 16435656 ttttcagtgcgctcttctctacactactgtatatggacaaagaaggattcgagttatgaa 16435715 Query: 277 tatttcacttccatgcacaagcacgctcaacaaccttttccgatatgctgatctggaagc 336 | ||||| |||||||||| || ||||| || || ||||||||||||||| ||||| | Sbjct: 16435716 cctctcactcccatgcacaaacatgctcagtaatctcttccgatatgctgatttggaaac 16435775 Query: 337 acagttcacat 347 |||||| |||| Sbjct: 16435776 acagtttacat 16435786 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 146 attgactctgacaaaaccataatggttaccttcaagcatgatgataagtttcaggagaat 205 ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||| Sbjct: 16434700 attgattctgacaaaactataatggtcacctttaagcacgatgacaagttacaggaaaat 16434759 Query: 206 acagagtgtggttt 219 |||| |||||||| Sbjct: 16434760 tcagaatgtggttt 16434773
>gb|AY105862.1| Zea mays PCO076623 mRNA sequence Length = 924 Score = 75.8 bits (38), Expect = 2e-10 Identities = 137/170 (80%) Strand = Plus / Plus Query: 443 taccgaaaacattgtgcatctgtgagttcttctggacagttgattcttccggaggcttta 502 ||||| ||||| ||||||||||| | || || || ||||||||||| || |||||| || Sbjct: 192 taccgcaaacactgtgcatctgtaacctcatcggggcagttgattctcccagaggctcta 251 Query: 503 aaacttctgcctttgtataccctggccttggttaaaagcataggactgaggaatgatggg 562 ||||| |||||||| ||||| ||||| |||| ||||| |||| |||| | ||||||| Sbjct: 252 aaactgctgcctttatatactctggcactggtaaaaagtgtaggcttgagaactgatggg 311 Query: 563 agagtagacgatcgatcctattgggtctctgttgtctcctcagtttctgt 612 || |||| || || ||||||||| | ||| | ||||| ||||||||||| Sbjct: 312 cgattagatgaccgttcctattggatatctctggtctcgtcagtttctgt 361
>ref|NM_119416.2| Arabidopsis thaliana protein binding AT4G32640 mRNA, complete cds Length = 3432 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 44 tttgaggctgtcatgcgtgtcaggtgcagtcaggggcttcaagttcaagactattctggc 103 ||||||||||||||||| ||||| ||||| ||||| ||||||| ||||| || ||||| Sbjct: 2464 tttgaggctgtcatgcgagtcagatgcagccagggtattcaagtgcaagaatactctggg 2523 Query: 104 aacttctgcaagcgtgttcctactgatattgat 136 || |||||||| || |||| ||||| |||||| Sbjct: 2524 aatttctgcaaacgcattccaactgacattgat 2556
>emb|AL138641.2|ATT22K7 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7 Length = 82316 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 44 tttgaggctgtcatgcgtgtcaggtgcagtcagg 77 ||||||||||||||||| ||||| |||||||||| Sbjct: 20065 tttgaggctgtcatgcgagtcagatgcagtcagg 20032 Score = 40.1 bits (20), Expect = 8.5 Identities = 38/44 (86%) Strand = Plus / Minus Query: 146 attgactctgacaaaaccataatggttaccttcaagcatgatga 189 ||||||| ||||||| | |||||||| || || ||||||||||| Sbjct: 19622 attgactgtgacaaagctataatggtgacattaaagcatgatga 19579
>emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 77 Length = 197252 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Plus Query: 44 tttgaggctgtcatgcgtgtcaggtgcagtcagg 77 ||||||||||||||||| ||||| ||||| |||| Sbjct: 161738 tttgaggctgtcatgcgagtcagatgcagccagg 161771
>emb|AL022537.1|ATF4D11 Arabidopsis thaliana DNA chromosome 4, BAC clone F4D11 (ESSAII project) Length = 101715 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 44 tttgaggctgtcatgcgtgtcaggtgcagtcagg 77 ||||||||||||||||| ||||| ||||| |||| Sbjct: 69333 tttgaggctgtcatgcgagtcagatgcagccagg 69300
>ref|XM_859551.1| PREDICTED: Canis familiaris similar to WNK lysine deficient protein kinase 3 isoform 1, transcript variant 4 (LOC491900), mRNA Length = 5535 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 459 catctgtgagttcttctggacagtt 483 |||||||||| |||||||||||||| Sbjct: 2034 catctgtgagatcttctggacagtt 2010
>ref|XM_859534.1| PREDICTED: Canis familiaris similar to WNK lysine deficient protein kinase 3 isoform 1, transcript variant 3 (LOC491900), mRNA Length = 5394 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 459 catctgtgagttcttctggacagtt 483 |||||||||| |||||||||||||| Sbjct: 2034 catctgtgagatcttctggacagtt 2010
>ref|XM_549020.2| PREDICTED: Canis familiaris similar to WNK lysine deficient protein kinase 3 isoform 1, transcript variant 1 (LOC491900), mRNA Length = 5491 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 459 catctgtgagttcttctggacagtt 483 |||||||||| |||||||||||||| Sbjct: 2034 catctgtgagatcttctggacagtt 2010
>ref|XM_859496.1| PREDICTED: Canis familiaris similar to WNK lysine deficient protein kinase 3 isoform 1, transcript variant 2 (LOC491900), mRNA Length = 5508 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 459 catctgtgagttcttctggacagtt 483 |||||||||| |||||||||||||| Sbjct: 2148 catctgtgagatcttctggacagtt 2124
>gb|AY749109.1| Arabidopsis thaliana glycogenin-like starch initiation protein (PGSIP1) mRNA, complete cds Length = 1980 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 atgatgataagtttcaggagaata 206 ||||||||||| |||||||||||| Sbjct: 291 atgatgataagcttcaggagaata 268
>ref|NM_112752.2| Arabidopsis thaliana transferase, transferring glycosyl groups AT3G18660 transcript variant AT3G18660.1 mRNA, complete cds Length = 2142 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 atgatgataagtttcaggagaata 206 ||||||||||| |||||||||||| Sbjct: 315 atgatgataagcttcaggagaata 292
>ref|NM_001035645.1| Arabidopsis thaliana transferase, transferring glycosyl groups AT3G18660 transcript variant AT3G18660.2 mRNA, complete cds Length = 2160 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 atgatgataagtttcaggagaata 206 ||||||||||| |||||||||||| Sbjct: 291 atgatgataagcttcaggagaata 268
>gb|AC120366.9| Mus musculus chromosome 1, clone RP24-294P1, complete sequence Length = 156784 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 aagcaagctggaattggcattcca 379 |||||||||||||| ||||||||| Sbjct: 70279 aagcaagctggaataggcattcca 70302
>gb|AC103613.7| Mus musculus chromosome 14, clone RP24-75B12, complete sequence Length = 191158 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 ggtcataaatatttcacttccatg 291 |||||||||||||||| ||||||| Sbjct: 21629 ggtcataaatatttcagttccatg 21606
>gb|AC112926.7| Mus musculus chromosome 3, clone RP23-215M7, complete sequence Length = 222106 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ataaatatttcacttccatg 291 |||||||||||||||||||| Sbjct: 110685 ataaatatttcacttccatg 110666
>emb|AJ969414.1| Maize yellow stripe virus segment 3, partial sequence, genomic RNA Length = 1213 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tgatttgcctgctattgact 152 |||||||||||||||||||| Sbjct: 290 tgatttgcctgctattgact 309
>gb|AY142690.1| Arabidopsis thaliana unknown protein (At3g18660) mRNA, complete cds Length = 1999 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 atgatgataagtttcaggagaata 206 ||||||||||| |||||||||||| Sbjct: 291 atgatgataagcttcaggagaata 268
>gb|AY056133.1| Arabidopsis thaliana unknown protein (At3g18660) mRNA, complete cds Length = 2152 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 atgatgataagtttcaggagaata 206 ||||||||||| |||||||||||| Sbjct: 315 atgatgataagcttcaggagaata 292
>gb|AC121161.2| Homo sapiens BAC clone RP11-781M16 from 4, complete sequence Length = 167561 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ttttcagtgtgcacttcttt 236 |||||||||||||||||||| Sbjct: 113600 ttttcagtgtgcacttcttt 113581
>gb|AC012229.8| Homo sapiens chromosome 15, clone RP11-182L7, complete sequence Length = 119723 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tcctactgatattgatttgc 140 |||||||||||||||||||| Sbjct: 60864 tcctactgatattgatttgc 60883
>gb|AC125289.1| Homo sapiens chromosome 4 clone RP11-781M16, complete sequence Length = 167561 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ttttcagtgtgcacttcttt 236 |||||||||||||||||||| Sbjct: 113600 ttttcagtgtgcacttcttt 113581
>gb|AC116560.5| Ustilago hordei clone uhobac-4k21, complete sequence Length = 100958 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 ttgatttgcctgctattgactctg 155 |||||||||||||| ||||||||| Sbjct: 3661 ttgatttgcctgctgttgactctg 3638
>gb|AC114899.5| Ustilago hordei strain 4875-4 clone uhobac-1n1, complete sequence Length = 100185 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ttgatttgcctgctattgactctg 155 |||||||||||||| ||||||||| Sbjct: 54100 ttgatttgcctgctgttgactctg 54123
>gb|AC026741.6| Homo sapiens chromosome 5 clone CTD-2653M23, complete sequence Length = 195849 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 aatacagagtgtggttttca 222 |||||||||||||||||||| Sbjct: 133571 aatacagagtgtggttttca 133552
>gb|AC019341.6| Homo sapiens BAC clone RP11-719M18 from 4, complete sequence Length = 190122 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ttttcagtgtgcacttcttt 236 |||||||||||||||||||| Sbjct: 108722 ttttcagtgtgcacttcttt 108703
>gb|AC010380.5| Homo sapiens chromosome 5 clone CTD-2066C3, complete sequence Length = 95302 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 aatacagagtgtggttttca 222 |||||||||||||||||||| Sbjct: 25867 aatacagagtgtggttttca 25886
>gb|AC026463.5| Homo sapiens chromosome 5 clone RP11-317I23, complete sequence Length = 169199 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 aatacagagtgtggttttca 222 |||||||||||||||||||| Sbjct: 167664 aatacagagtgtggttttca 167683
>dbj|AB026654.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11 Length = 75508 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 atgatgataagtttcaggagaata 206 ||||||||||| |||||||||||| Sbjct: 5415 atgatgataagcttcaggagaata 5438
>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364 Length = 526707 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ttgatttgcctgctattgactctg 155 |||||||||||||| ||||||||| Sbjct: 328105 ttgatttgcctgctgttgactctg 328128
>gb|AC161883.6| Mus musculus BAC clone RP23-91K1 from chromosome 14, complete sequence Length = 206274 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 ggtcataaatatttcacttccatg 291 |||||||||||||||| ||||||| Sbjct: 120470 ggtcataaatatttcagttccatg 120447
>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete sequence Length = 188772 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 acttctgcaagcgtgttcctactg 128 |||||||||| ||||||||||||| Sbjct: 111812 acttctgcaaacgtgttcctactg 111789
>emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on chromosome 11, complete sequence Length = 207814 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 ggccttggttaaaagcatag 545 |||||||||||||||||||| Sbjct: 55328 ggccttggttaaaagcatag 55347
>emb|AL591892.4| Mouse DNA sequence from clone RP23-422F22 on chromosome 15, complete sequence Length = 113798 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 caagttcaagactattctgg 102 |||||||||||||||||||| Sbjct: 91663 caagttcaagactattctgg 91682 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,395,850 Number of Sequences: 3902068 Number of extensions: 5395850 Number of successful extensions: 97546 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97335 Number of HSP's gapped (non-prelim): 197 length of query: 622 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 599 effective length of database: 17,143,297,704 effective search space: 10268835324696 effective search space used: 10268835324696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
