ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9n04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469518.1| Oryza sativa (japonica cultivar-group), mRNA 153 7e-34
2dbj|AK106515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 7e-34
3dbj|AK122108.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
4gb|AY105376.1| Zea mays PCO091943 mRNA sequence 135 2e-28
5dbj|AK106520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 9e-12
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
8gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 80 9e-12
9ref|NM_125625.2| Arabidopsis thaliana IRE (INCOMPLETE ROOT HAIR ... 48 0.032
10dbj|AB037133.1| Arabidopsis thaliana IRE gene for IRE, complete cds 48 0.032
11emb|BX511209.11| Zebrafish DNA sequence from clone CH211-129A6 i... 44 0.49
12emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in ... 44 0.49
13ref|XM_760110.1| Theileria parva strain Muguga hypothetical prot... 42 2.0
14gb|AC093172.3| Homo sapiens BAC clone RP11-747K3 from 7, complet... 42 2.0
15gb|AC142340.1| Pan troglodytes BAC clone RP43-43B11 from 7, comp... 42 2.0
16gb|AC117460.7| Homo sapiens 3 BAC RP11-343D2 (Roswell Park Cance... 42 2.0
17emb|AL928677.6| Zebrafish DNA sequence from clone BUSM1-70B1 in ... 42 2.0
18emb|AL583917.1|MLEPRTN1 Mycobacterium leprae strain TN complete ... 42 2.0
19emb|AL035500.1|MLCL373 Mycobacterium leprae cosmid L373 42 2.0
20dbj|AB023033.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.0
21ref|NM_103745.2| Arabidopsis thaliana kinase AT1G48490 transcrip... 40 7.7
22ref|NM_001036078.1| Arabidopsis thaliana kinase AT1G48490 transc... 40 7.7
23ref|NM_112666.2| Arabidopsis thaliana kinase AT3G17850 mRNA, com... 40 7.7
24ref|NM_195541.1| Oryza sativa (japonica cultivar-group) hypothet... 40 7.7
25gb|BC068038.1| Danio rerio zgc:77713, mRNA (cDNA clone MGC:77713... 40 7.7
26gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome... 40 7.7
27gb|AC132253.5| Mus musculus BAC clone RP24-456H22 from chromosom... 40 7.7
28gb|AC107792.10| Mus musculus chromosome 17, clone RP23-83F8, com... 40 7.7
29gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosom... 40 7.7
30emb|CR759875.6| Zebrafish DNA sequence from clone DKEY-274K22 in... 40 7.7
31emb|CR405706.7| Zebrafish DNA sequence from clone CH211-233D12 i... 40 7.7
32emb|BX936325.9| Zebrafish DNA sequence from clone CH211-74P16 in... 40 7.7
33gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.7
34gb|AC103816.2| Homo sapiens chromosome 8, clone CTC-497K19, comp... 40 7.7
35gb|AC113339.1| Genomic sequence for Oryza sativa (japonica culti... 40 7.7
36ref|XM_681381.1| PREDICTED: Danio rerio similar to putative prot... 40 7.7
37gb|AF385743.1|AF385743 Arabidopsis thaliana At1g48490/T1N15_9 mR... 40 7.7
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
39ref|NM_205602.2| Danio rerio zgc:77713 (zgc:77713), mRNA 40 7.7
40dbj|AK117224.1| Arabidopsis thaliana At3g17850 mRNA for putative... 40 7.7
41dbj|AK111785.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
42gb|BT002248.1| Arabidopsis thaliana At1g48490/T1N15_9 mRNA, comp... 40 7.7
43emb|AL163153.4|CNS01RIE Human chromosome 14 DNA sequence BAC R-1... 40 7.7
44gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
45emb|AL954713.11| Mouse DNA sequence from clone RP23-463K8 on chr... 40 7.7
46emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, co... 40 7.7
47gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, comp... 40 7.7
48dbj|AB037134.1| Arabidopsis thaliana IREH1 gene for IRE homolog ... 40 7.7 
>ref|XM_469518.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4752

 Score =  153 bits (77), Expect = 7e-34
 Identities = 250/302 (82%), Gaps = 8/302 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1    agtggcagcagtagttgcgtgagcaatcaccaagnatgacatgggggatgagcatggnag 60
            |||||||||||||| || |||||||||||||||| |||| ||||||||||||  | |   
Sbjct: 3622 agtggcagcagtagctgtgtgagcaatcaccaag-atgatatgggggatgagtctag--- 3677

                                                                        
Query: 61   gtggccccactgactttgaatctggcccaaatgtcaattactctttcagcaacttctcgt 120
             ||||  |||||| ||||||||| || |||||||||| || ||||||||||| ||||| |
Sbjct: 3678 -tggcttcactgagtttgaatctagctcaaatgtcaactattctttcagcaatttctcat 3736

                                                                        
Query: 121  tcaagaatctttcacaacttgcatccatcaactatgatctgctgacgaaaggattgaagg 180
            |||||||||| ||||||||||  || ||||| || ||| |||| || |||||||||||||
Sbjct: 3737 tcaagaatctatcacaacttgtctctatcaattacgatttgctcaccaaaggattgaagg 3796

                                                                        
Query: 181  acgagcctccaatgaaacctgaatcgtagctgtctgt-ttataccgaggtttgttttatt 239
            | || || |||| |||| ||||  |||||| ||  || ||||| || |  ||  || |||
Sbjct: 3797 atgatccaccaacgaaatctgagacgtagcagttcgtgttatatcg-gaatttattcatt 3855

                                                                        
Query: 240  tgaagtaaccaaaacagtttacaaggcgctcgggtggtgtggatcttgtacatatgaaag 299
            |||||||||| ||||| ||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct: 3856 tgaagtaacc-aaacaatttacaaggtgctcgcgtggtgtagatcttgtacatatgaaag 3914

              
Query: 300  tg 301
            ||
Sbjct: 3915 tg 3916



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                    
Query: 350  gtgtcatcgtcggtgaaacatccttgaccataagttggcatgagtcacctaggagc 405
            |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 4006 gtgtcatcatcgatgaaacatccttgaccataagttggaatgcgtcacctaggagc 4061
to top
>dbj|AK106515.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A10, full
            insert sequence
          Length = 3151

 Score =  153 bits (77), Expect = 7e-34
 Identities = 250/302 (82%), Gaps = 8/302 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1    agtggcagcagtagttgcgtgagcaatcaccaagnatgacatgggggatgagcatggnag 60
            |||||||||||||| || |||||||||||||||| |||| ||||||||||||  | |   
Sbjct: 2187 agtggcagcagtagctgtgtgagcaatcaccaag-atgatatgggggatgagtctag--- 2242

                                                                        
Query: 61   gtggccccactgactttgaatctggcccaaatgtcaattactctttcagcaacttctcgt 120
             ||||  |||||| ||||||||| || |||||||||| || ||||||||||| ||||| |
Sbjct: 2243 -tggcttcactgagtttgaatctagctcaaatgtcaactattctttcagcaatttctcat 2301

                                                                        
Query: 121  tcaagaatctttcacaacttgcatccatcaactatgatctgctgacgaaaggattgaagg 180
            |||||||||| ||||||||||  || ||||| || ||| |||| || |||||||||||||
Sbjct: 2302 tcaagaatctatcacaacttgtctctatcaattacgatttgctcaccaaaggattgaagg 2361

                                                                        
Query: 181  acgagcctccaatgaaacctgaatcgtagctgtctgt-ttataccgaggtttgttttatt 239
            | || || |||| |||| ||||  |||||| ||  || ||||| || |  ||  || |||
Sbjct: 2362 atgatccaccaacgaaatctgagacgtagcagttcgtgttatatcg-gaatttattcatt 2420

                                                                        
Query: 240  tgaagtaaccaaaacagtttacaaggcgctcgggtggtgtggatcttgtacatatgaaag 299
            |||||||||| ||||| ||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct: 2421 tgaagtaacc-aaacaatttacaaggtgctcgcgtggtgtagatcttgtacatatgaaag 2479

              
Query: 300  tg 301
            ||
Sbjct: 2480 tg 2481



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                    
Query: 350  gtgtcatcgtcggtgaaacatccttgaccataagttggcatgagtcacctaggagc 405
            |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 2571 gtgtcatcatcgatgaaacatccttgaccataagttggaatgcgtcacctaggagc 2626
to top
>dbj|AK122108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126F17, full
            insert sequence
          Length = 4613

 Score =  139 bits (70), Expect = 1e-29
 Identities = 249/302 (82%), Gaps = 10/302 (3%)
 Strand = Plus / Plus

                                                                        
Query: 1    agtggcagcagtagttgcgtgagcaatcaccaagnatgacatgggggatgagcatggnag 60
            |||||||||||||| || |||||||||||||||| |||| ||||||||||||  | |   
Sbjct: 3651 agtggcagcagtagctgtgtgagcaatcaccaag-atgatatgggggatgagtctag--- 3706

                                                                        
Query: 61   gtggccccactgactttgaatctggcccaaatgtcaattactctttcagcaacttctcgt 120
             ||||  |||||| ||||||||| || |||||||||| || ||||||||||| |||||  
Sbjct: 3707 -tggcttcactgagtttgaatctagctcaaatgtcaactattctttcagcaatttctc-- 3763

                                                                        
Query: 121  tcaagaatctttcacaacttgcatccatcaactatgatctgctgacgaaaggattgaagg 180
            |||||||||| ||||||||||  || ||||| || ||| |||| || |||||||||||||
Sbjct: 3764 tcaagaatctatcacaacttgtctctatcaattacgatttgctcaccaaaggattgaagg 3823

                                                                        
Query: 181  acgagcctccaatgaaacctgaatcgtagctgtctgt-ttataccgaggtttgttttatt 239
            | || || |||| |||| ||||  |||||| ||  || ||||| || |  ||  || |||
Sbjct: 3824 atgatccaccaacgaaatctgagacgtagcagttcgtgttatatcg-gaatttattcatt 3882

                                                                        
Query: 240  tgaagtaaccaaaacagtttacaaggcgctcgggtggtgtggatcttgtacatatgaaag 299
            |||||||||| ||||| ||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct: 3883 tgaagtaacc-aaacaatttacaaggtgctcgcgtggtgtagatcttgtacatatgaaag 3941

              
Query: 300  tg 301
            ||
Sbjct: 3942 tg 3943



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                    
Query: 350  gtgtcatcgtcggtgaaacatccttgaccataagttggcatgagtcacctaggagc 405
            |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 4033 gtgtcatcatcgatgaaacatccttgaccataagttggaatgcgtcacctaggagc 4088
to top
>gb|AY105376.1| Zea mays PCO091943 mRNA sequence
          Length = 1560

 Score =  135 bits (68), Expect = 2e-28
 Identities = 155/181 (85%), Gaps = 5/181 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggcagcagtagttgcgtgagcaatcaccaagnatgacatgggggatgagcatggnag 60
           ||||| ||||||||||| |||||||| | ||||| ||||||||||||| || ||     |
Sbjct: 726 agtggaagcagtagttgtgtgagcaaccgccaag-atgacatgggggagga-ca---gcg 780

                                                                       
Query: 61  gtggccccactgactttgaatctggcccaaatgtcaattactctttcagcaacttctcgt 120
            ||||| || ||| ||||||||| |  ||||||||||||| |||||||||||||||||||
Sbjct: 781 atggcctcaatgagtttgaatctagtgcaaatgtcaattattctttcagcaacttctcgt 840

                                                                       
Query: 121 tcaagaatctttcacaacttgcatccatcaactatgatctgctgacgaaaggattgaagg 180
           |||||||||| ||||||||||| |||||||| |||||| |||| || |||||||||||||
Sbjct: 841 tcaagaatctatcacaacttgcttccatcaattatgatatgctcaccaaaggattgaagg 900

            
Query: 181 a 181
           |
Sbjct: 901 a 901



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 473  ttactgtaatcagaatacaaaccctgaa 500
            |||||||| ||||||||||| |||||||
Sbjct: 1233 ttactgtattcagaatacaacccctgaa 1260
to top
>dbj|AK106520.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C10, full
            insert sequence
          Length = 2732

 Score =  119 bits (60), Expect = 1e-23
 Identities = 152/181 (83%), Gaps = 5/181 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1    agtggcagcagtagttgcgtgagcaatcaccaagnatgacatgggggatgagcatggnag 60
            |||||||||||||| || |||||||||||||||| |||| ||||||||||||  | |   
Sbjct: 2033 agtggcagcagtagctgtgtgagcaatcaccaag-atgatatgggggatgagtctag--- 2088

                                                                        
Query: 61   gtggccccactgactttgaatctggcccaaatgtcaattactctttcagcaacttctcgt 120
             ||||  |||||| ||||||||| || |||||||||| || ||||||||||| ||||| |
Sbjct: 2089 -tggcttcactgagtttgaatctagctcaaatgtcaactattctttcagcaatttctcat 2147

                                                                        
Query: 121  tcaagaatctttcacaacttgcatccatcaactatgatctgctgacgaaaggattgaagg 180
            |||||||||| ||||||||||  || ||||| || ||| |||| || |||||||||||||
Sbjct: 2148 tcaagaatctatcacaacttgtctctatcaattacgatttgctcaccaaaggattgaagg 2207

             
Query: 181  a 181
            |
Sbjct: 2208 a 2208



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                        
Query: 237  atttgaagtaaccaaaacagtttacaaggcgctcgggtggtgtggatcttgtacatatga 296
            |||||||||||||||| || ||||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 2264 atttgaagtaaccaaa-caatttacaaggtgctcgcgtggtgtagatcttgtacatatga 2322

                 
Query: 297  aagtg 301
            |||||
Sbjct: 2323 aagtg 2327



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                    
Query: 350  gtgtcatcgtcggtgaaacatccttgaccataagttggcatgagtcacctaggagc 405
            |||||||| ||| ||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 2417 gtgtcatcatcgatgaaacatccttgaccataagttggaaggcgtcacctaggagc 2472
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 350      gtgtcatcgtcggtgaaacatccttgaccataagttggcatgagtcacctaggagc 405
                |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 28455866 gtgtcatcatcgatgaaacatccttgaccataagttggaatgcgtcacctaggagc 28455811



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                        
Query: 237      atttgaagtaaccaaaacagtttacaaggcgctcgggtggtgtggatcttgtacat 292
                |||||||||||||||| || ||||||||| ||||| ||||||| ||||||||||||
Sbjct: 28456110 atttgaagtaaccaaa-caatttacaaggtgctcgcgtggtgtagatcttgtacat 28456056



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                          
Query: 68       cactgactttgaatctggcccaaatgtcaattactctttcagcaacttctcgttcaag 125
                |||||| ||||||||| || |||||||||| || ||||||||||| ||||| ||||||
Sbjct: 28457184 cactgagtttgaatctagctcaaatgtcaactattctttcagcaatttctcattcaag 28457127



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 1        agtggcagcagtagttgcgtgagcaatcaccaag 34
                |||||||||||||| || ||||||||||||||||
Sbjct: 28457358 agtggcagcagtagctgtgtgagcaatcaccaag 28457325
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 350      gtgtcatcgtcggtgaaacatccttgaccataagttggcatgagtcacctaggagc 405
                |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 28547190 gtgtcatcatcgatgaaacatccttgaccataagttggaatgcgtcacctaggagc 28547135



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                        
Query: 237      atttgaagtaaccaaaacagtttacaaggcgctcgggtggtgtggatcttgtacat 292
                |||||||||||||||| || ||||||||| ||||| ||||||| ||||||||||||
Sbjct: 28547434 atttgaagtaaccaaa-caatttacaaggtgctcgcgtggtgtagatcttgtacat 28547380



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                          
Query: 68       cactgactttgaatctggcccaaatgtcaattactctttcagcaacttctcgttcaag 125
                |||||| ||||||||| || |||||||||| || ||||||||||| ||||| ||||||
Sbjct: 28548508 cactgagtttgaatctagctcaaatgtcaactattctttcagcaatttctcattcaag 28548451



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 1        agtggcagcagtagttgcgtgagcaatcaccaag 34
                |||||||||||||| || ||||||||||||||||
Sbjct: 28548682 agtggcagcagtagctgtgtgagcaatcaccaag 28548649
to top
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
             sequence
          Length = 143681

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 350   gtgtcatcgtcggtgaaacatccttgaccataagttggcatgagtcacctaggagc 405
             |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 49996 gtgtcatcatcgatgaaacatccttgaccataagttggaatgcgtcacctaggagc 49941



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                     
Query: 237   atttgaagtaaccaaaacagtttacaaggcgctcgggtggtgtggatcttgtacat 292
             |||||||||||||||| || ||||||||| ||||| ||||||| ||||||||||||
Sbjct: 50240 atttgaagtaaccaaa-caatttacaaggtgctcgcgtggtgtagatcttgtacat 50186



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 68    cactgactttgaatctggcccaaatgtcaattactctttcagcaacttctcgttcaag 125
             |||||| ||||||||| || |||||||||| || ||||||||||| ||||| ||||||
Sbjct: 51314 cactgagtttgaatctagctcaaatgtcaactattctttcagcaatttctcattcaag 51257



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 1     agtggcagcagtagttgcgtgagcaatcaccaag 34
             |||||||||||||| || ||||||||||||||||
Sbjct: 51488 agtggcagcagtagctgtgtgagcaatcaccaag 51455
to top
>ref|NM_125625.2| Arabidopsis thaliana IRE (INCOMPLETE ROOT HAIR ELONGATION); kinase
            AT5G62310 (IRE) mRNA, complete cds
          Length = 3557

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 105  ttcagcaacttctcgttcaagaatctttcacaacttgcatccatcaactatgatct 160
            |||||||| || ||||||||||| || |||||||| || || |||||||| |||||
Sbjct: 3435 ttcagcaatttttcgttcaagaacctctcacaactggcttcgatcaactacgatct 3490
to top
>dbj|AB037133.1| Arabidopsis thaliana IRE gene for IRE, complete cds
          Length = 3842

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 105  ttcagcaacttctcgttcaagaatctttcacaacttgcatccatcaactatgatct 160
            |||||||| || ||||||||||| || |||||||| || || |||||||| |||||
Sbjct: 3508 ttcagcaatttttcgttcaagaacctctcacaactggcttcgatcaactacgatct 3563
to top
>emb|BX511209.11| Zebrafish DNA sequence from clone CH211-129A6 in linkage group 5,
             complete sequence
          Length = 159017

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 530   ttgtggcaggtcattggggatg 551
             ||||||||||||||||||||||
Sbjct: 89232 ttgtggcaggtcattggggatg 89253
to top
>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5, complete
              sequence
          Length = 178961

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 530    ttgtggcaggtcattggggatg 551
              ||||||||||||||||||||||
Sbjct: 171355 ttgtggcaggtcattggggatg 171334
to top
>ref|XM_760110.1| Theileria parva strain Muguga hypothetical protein (TP02_0637)
           partial mRNA
          Length = 1614

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 73  actttgaatctggcccaaatg 93
           |||||||||||||||||||||
Sbjct: 610 actttgaatctggcccaaatg 590
to top
>gb|AC093172.3| Homo sapiens BAC clone RP11-747K3 from 7, complete sequence
          Length = 24934

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 537  aggtcattggggatggagtag 557
            |||||||||||||||||||||
Sbjct: 6993 aggtcattggggatggagtag 7013
to top
>gb|AC142340.1| Pan troglodytes BAC clone RP43-43B11 from 7, complete sequence
          Length = 173662

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 537   aggtcattggggatggagtag 557
             |||||||||||||||||||||
Sbjct: 95818 aggtcattggggatggagtag 95798
to top
>gb|AC117460.7| Homo sapiens 3 BAC RP11-343D2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183595

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 235    ttatttgaagtaaccaaaaca 255
              |||||||||||||||||||||
Sbjct: 139927 ttatttgaagtaaccaaaaca 139947
to top
>emb|AL928677.6| Zebrafish DNA sequence from clone BUSM1-70B1 in linkage group 7
             Contains a novel gene similar to mouse and rodent CHRNA7
             (cholinergic receptor, nicotinic, alpha polypeptide 7), a
             novel gene and two CpG islands, complete sequence
          Length = 144076

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 225   gaggtttgttttatttgaagt 245
             |||||||||||||||||||||
Sbjct: 12935 gaggtttgttttatttgaagt 12955
to top
>emb|AL583917.1|MLEPRTN1 Mycobacterium leprae strain TN complete genome; segment 1/10
          Length = 344050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 263    aggcgctcgggtggtgtggat 283
              |||||||||||||||||||||
Sbjct: 216727 aggcgctcgggtggtgtggat 216707
to top
>emb|AL035500.1|MLCL373 Mycobacterium leprae cosmid L373
          Length = 37304

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 263 aggcgctcgggtggtgtggat 283
           |||||||||||||||||||||
Sbjct: 874 aggcgctcgggtggtgtggat 854
to top
>dbj|AB023033.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K6M13
          Length = 77129

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 1     agtggcagcagtagttgcgtgagcaatca 29
             |||||||||||||||||| || |||||||
Sbjct: 58170 agtggcagcagtagttgcttgcgcaatca 58198
to top
>ref|NM_103745.2| Arabidopsis thaliana kinase AT1G48490 transcript variant AT1G48490.1
            mRNA, complete cds
          Length = 3145

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 114  ttctcgttcaagaatctttcacaacttgcatccatcaactatgatctg 161
            ||||||||||||||||| || || || ||||  ||||||||| |||||
Sbjct: 2769 ttctcgttcaagaatctctcgcagctggcatatatcaactataatctg 2816
to top
>ref|NM_001036078.1| Arabidopsis thaliana kinase AT1G48490 transcript variant AT1G48490.2
            mRNA, complete cds
          Length = 3277

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 114  ttctcgttcaagaatctttcacaacttgcatccatcaactatgatctg 161
            ||||||||||||||||| || || || ||||  ||||||||| |||||
Sbjct: 2769 ttctcgttcaagaatctctcgcagctggcatatatcaactataatctg 2816
to top
>ref|NM_112666.2| Arabidopsis thaliana kinase AT3G17850 mRNA, complete cds
          Length = 4253

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                        
Query: 97   attactctttcagcaacttctcgttcaagaatctttcacaacttgcatccatcaactatg 156
            ||||||||||||| || |||||||| ||||| || || ||  | || || ||||||||||
Sbjct: 3989 attactctttcagtaatttctcgtttaagaacctctctcagttggcgtctatcaactatg 4048

                
Query: 157  atct 160
            ||||
Sbjct: 4049 atct 4052
to top
>ref|NM_195541.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBb0047B19.4), mRNA
          Length = 2148

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  gtggtgtcatcgtcggtgaa 366
            ||||||||||||||||||||
Sbjct: 1288 gtggtgtcatcgtcggtgaa 1307
to top
>gb|BC068038.1| Danio rerio zgc:77713, mRNA (cDNA clone MGC:77713 IMAGE:7000543),
            complete cds
          Length = 1926

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  tttatttgaagtaaccaaaa 253
            ||||||||||||||||||||
Sbjct: 1868 tttatttgaagtaaccaaaa 1849
to top
>gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome 10, complete sequence
          Length = 226256

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 384    ttggcatgagtcacctagga 403
              ||||||||||||||||||||
Sbjct: 203583 ttggcatgagtcacctagga 203564
to top
>gb|AC132253.5| Mus musculus BAC clone RP24-456H22 from chromosome 19, complete
             sequence
          Length = 194083

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 549   atggagtaggtttccctgta 568
             ||||||||||||||||||||
Sbjct: 40270 atggagtaggtttccctgta 40251
to top
>gb|AC107792.10| Mus musculus chromosome 17, clone RP23-83F8, complete sequence
          Length = 253013

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    aatgtcaattactctttcagcaac 113
             ||||||||| ||||||||||||||
Sbjct: 92285 aatgtcaatcactctttcagcaac 92308
to top
>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete sequence
          Length = 190295

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    ttggcatgagtcacctagga 403
              ||||||||||||||||||||
Sbjct: 133801 ttggcatgagtcacctagga 133820
to top
>emb|CR759875.6| Zebrafish DNA sequence from clone DKEY-274K22 in linkage group 1,
             complete sequence
          Length = 216255

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   tttatttgaagtaaccaaaa 253
             ||||||||||||||||||||
Sbjct: 64625 tttatttgaagtaaccaaaa 64644
to top
>emb|CR405706.7| Zebrafish DNA sequence from clone CH211-233D12 in linkage group 1,
              complete sequence
          Length = 181249

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    tttatttgaagtaaccaaaa 253
              ||||||||||||||||||||
Sbjct: 155349 tttatttgaagtaaccaaaa 155368
to top
>emb|BX936325.9| Zebrafish DNA sequence from clone CH211-74P16 in linkage group 1,
             complete sequence
          Length = 185075

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   tttatttgaagtaaccaaaa 253
             ||||||||||||||||||||
Sbjct: 95866 tttatttgaagtaaccaaaa 95847
to top
>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0082N11, from chromosome 10, complete sequence
          Length = 127525

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   gtggtgtcatcgtcggtgaa 366
             ||||||||||||||||||||
Sbjct: 86613 gtggtgtcatcgtcggtgaa 86594
to top
>gb|AC103816.2| Homo sapiens chromosome 8, clone CTC-497K19, complete sequence
          Length = 161827

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     tttgaatctggcccaaatgt 94
              ||||||||||||||||||||
Sbjct: 138119 tttgaatctggcccaaatgt 138100
to top
>gb|AC113339.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OSJNBb0047B19, from chromosome 10,
             complete sequence
          Length = 137015

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   gtggtgtcatcgtcggtgaa 366
             ||||||||||||||||||||
Sbjct: 19088 gtggtgtcatcgtcggtgaa 19069
to top
>ref|XM_681381.1| PREDICTED: Danio rerio similar to putative protein of bilaterial
            origin (11.2 kD) (3E558) (LOC558192), mRNA
          Length = 1915

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  tttatttgaagtaaccaaaa 253
            ||||||||||||||||||||
Sbjct: 1904 tttatttgaagtaaccaaaa 1885
to top
>gb|AF385743.1|AF385743 Arabidopsis thaliana At1g48490/T1N15_9 mRNA, complete cds
          Length = 3134

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 114  ttctcgttcaagaatctttcacaacttgcatccatcaactatgatctg 161
            ||||||||||||||||| || || || ||||  ||||||||| |||||
Sbjct: 2767 ttctcgttcaagaatctctcgcagctggcatatatcaactataatctg 2814
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     gtggtgtcatcgtcggtgaa 366
               ||||||||||||||||||||
Sbjct: 7576094 gtggtgtcatcgtcggtgaa 7576075
to top
>ref|NM_205602.2| Danio rerio zgc:77713 (zgc:77713), mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  tttatttgaagtaaccaaaa 253
            ||||||||||||||||||||
Sbjct: 1868 tttatttgaagtaaccaaaa 1849
to top
>dbj|AK117224.1| Arabidopsis thaliana At3g17850 mRNA for putative protein kinase,
            complete cds, clone: RAFL16-77-O03
          Length = 4253

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                        
Query: 97   attactctttcagcaacttctcgttcaagaatctttcacaacttgcatccatcaactatg 156
            ||||||||||||| || |||||||| ||||| || || ||  | || || ||||||||||
Sbjct: 3989 attactctttcagtaatttctcgtttaagaacctctctcagttggcgtctatcaactatg 4048

                
Query: 157  atct 160
            ||||
Sbjct: 4049 atct 4052
to top
>dbj|AK111785.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089N11, full
            insert sequence
          Length = 3650

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                        
Query: 102  tctttcagcaacttctcgttcaagaatctttcacaacttgcatccatcaactatgatctg 161
            ||||||||||  ||||| ||||||||  |||| ||  | |||||||| ||||||||||||
Sbjct: 3104 tctttcagcattttctcattcaagaacatttctcagttagcatccatgaactatgatctg 3163
to top
>gb|BT002248.1| Arabidopsis thaliana At1g48490/T1N15_9 mRNA, complete cds
          Length = 2820

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 114  ttctcgttcaagaatctttcacaacttgcatccatcaactatgatctg 161
            ||||||||||||||||| || || || ||||  ||||||||| |||||
Sbjct: 2722 ttctcgttcaagaatctctcgcagctggcatatatcaactataatctg 2769
to top
>emb|AL163153.4|CNS01RIE Human chromosome 14 DNA sequence BAC R-16O13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166562

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     atctggcccaaatgtcaatt 99
              ||||||||||||||||||||
Sbjct: 117739 atctggcccaaatgtcaatt 117720
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     gtggtgtcatcgtcggtgaa 366
               ||||||||||||||||||||
Sbjct: 7580293 gtggtgtcatcgtcggtgaa 7580274
to top
>emb|AL954713.11| Mouse DNA sequence from clone RP23-463K8 on chromosome 2, complete
              sequence
          Length = 171734

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    tcgttcaagaatctttcacaactt 140
              |||||||||||||||||| |||||
Sbjct: 113519 tcgttcaagaatctttcaaaactt 113542
to top
>emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, complete sequence
          Length = 216608

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    tttatttgaagtaaccaaaa 253
              ||||||||||||||||||||
Sbjct: 144441 tttatttgaagtaaccaaaa 144422
to top
>gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, complete sequence
          Length = 194160

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aatctggcccaaatgtcaat 98
             ||||||||||||||||||||
Sbjct: 96597 aatctggcccaaatgtcaat 96616
to top
>dbj|AB037134.1| Arabidopsis thaliana IREH1 gene for IRE homolog 1, partial cds
          Length = 3214

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                        
Query: 97   attactctttcagcaacttctcgttcaagaatctttcacaacttgcatccatcaactatg 156
            ||||||||||||| || |||||||| ||||| || || ||  | || || ||||||||||
Sbjct: 2959 attactctttcagtaatttctcgtttaagaacctctctcagttggcgtctatcaactatg 3018

                
Query: 157  atct 160
            ||||
Sbjct: 3019 atct 3022


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,325,864
Number of Sequences: 3902068
Number of extensions: 4325864
Number of successful extensions: 105165
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 104959
Number of HSP's gapped (non-prelim): 198
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top