ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9n03 |
|---|---|
| Clone Library Name | barley_pub |
>PRH_ARATH (P48785) Pathogenesis-related homeodomain protein (PRHA)| Length = 796 Score = 107 bits (267), Expect = 2e-23 Identities = 65/166 (39%), Positives = 102/166 (61%), Gaps = 15/166 (9%) Frame = +2 Query: 95 HTNSNLGIDSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGK-LTDNEKQSEDEDWGTSNKR 271 H SN+ ++ + E + R ++ VDY +L EMFGK E+ SEDEDWG +++R Sbjct: 351 HRLSNM-VEQCETSNEETVCGPRQRRTVDYTQLYYEMFGKDAVLQEQGSEDEDWGPNDRR 409 Query: 272 KKRRVDSAGVGV----KSAEGFSDV--------KSNEKVQPQ--RRKLFRIPPEAVQVLR 409 K++R AG + +S++ DV + + V+ + RR++FR+P AV+ LR Sbjct: 410 KRKRESDAGSTLVTMCESSKKDQDVVETLEQSERDSVSVENKGGRRRMFRLPRNAVEKLR 469 Query: 410 KSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 + FAE+ELP++ V++ L+ EL + EK++KWFKNTR ALR+RK E Sbjct: 470 QVFAETELPSKAVRDRLAKELSLDPEKVNKWFKNTRYMALRNRKTE 515
>HOX1A_MAIZE (P46605) Homeobox protein HOX1A| Length = 719 Score = 53.9 bits (128), Expect = 3e-07 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 27/150 (18%) Frame = +2 Query: 158 QRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVK 337 +R + +DYK+L +E +G+ + + S+DE+W N + + + +G V Sbjct: 467 RRQAERLDYKKLYDEAYGEASSDS--SDDEEWSGKNTPIIKSNEEGEANSPAGKGSRVVH 524 Query: 338 SNEKVQPQRRKLF---------------------------RIPPEAVQVLRKSFAESELP 436 N+++ Q K P Q L + F P Sbjct: 525 HNDELTTQSTKKSLHSIHGSVDEKPGDLTSNGSNSTARKGHFGPVINQKLHEHFKTQPYP 584 Query: 437 TREVKENLSTELGISFEKIDKWFKNTRCAA 526 +R VKE+L+ ELG++F +++KWF+ R +A Sbjct: 585 SRSVKESLAEELGLTFRQVNKWFETRRHSA 614
>HAT31_ARATH (Q04996) Homeobox protein HAT3.1| Length = 661 Score = 48.5 bits (114), Expect = 1e-05 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 32/165 (19%) Frame = +2 Query: 119 DSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAG 298 D G DD ++ +R + +DYK+L +E + + + S+D+DW + + K +S Sbjct: 442 DVGLDDGPAGVSRRRNVERLDYKKLYDEEYDNVPTSS--SDDDDWDKTARMGKEDSESED 499 Query: 299 VG----VKSAEGFSDVKSNEKVQPQRRK----LFRIPPEA-------------------- 394 G +K + D S + ++ +R +P E Sbjct: 500 EGDTVPLKQSSNAEDHTSKKLIRKSKRADKKDTLEMPQEGPGENGGSGEIEKSSSSACKQ 559 Query: 395 ----VQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 Q L SF E++ P + KE+L+ EL ++ ++++ WFK+ R Sbjct: 560 TDPKTQRLYISFQENQYPDKATKESLAKELQMTVKQVNNWFKHRR 604
>PRH_PETCR (P48786) Pathogenesis-related homeodomain protein (PRHP)| Length = 1088 Score = 46.6 bits (109), Expect = 5e-05 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 57/177 (32%) Frame = +2 Query: 158 QRPKKEVDYKRLNEEMFGKLTD-----------------------NEKQSEDEDWGTSNK 268 +R + +DYK+LN+ F K+ D S DED+ ++ Sbjct: 811 RRQVESLDYKKLNDIEFSKMCDILDILSSQLDVIICTGNQEEYGNTSSDSSDEDYMVTSS 870 Query: 269 RKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQ---RRKLFRIPPE---------------- 391 K D ++ D++ ++K + RR + + E Sbjct: 871 PDKNNSDKEATAMERGRESGDLELDQKARESTHNRRYIKKFAVEGTDSFLSRSCEDSAAP 930 Query: 392 ---------------AVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 A Q L +SF E++ P R VKE+L+ EL +S ++ WF N R Sbjct: 931 VAGSKSTSKTLHGEHATQRLLQSFKENQYPQRAVKESLAAELALSVRQVSNWFNNRR 987
>LHX1_SAIBB (Q5IS89) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| Length = 406 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVKENLS 463 DS V EG S+ ++ + +RR I + ++ L+ +FA + PTR ++E L+ Sbjct: 155 DSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA 214 Query: 464 TELGISFEKIDKWFKNTR 517 E G++ I WF+N R Sbjct: 215 QETGLNMRVIQVWFQNRR 232
>LHX1_RAT (P63007) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) (Rlim) Length = 406 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVKENLS 463 DS V EG S+ ++ + +RR I + ++ L+ +FA + PTR ++E L+ Sbjct: 155 DSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA 214 Query: 464 TELGISFEKIDKWFKNTR 517 E G++ I WF+N R Sbjct: 215 QETGLNMRVIQVWFQNRR 232
>LHX1_PANTR (Q5IS44) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| Length = 406 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVKENLS 463 DS V EG S+ ++ + +RR I + ++ L+ +FA + PTR ++E L+ Sbjct: 155 DSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA 214 Query: 464 TELGISFEKIDKWFKNTR 517 E G++ I WF+N R Sbjct: 215 QETGLNMRVIQVWFQNRR 232
>LHX1_MOUSE (P63006) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) Length = 406 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVKENLS 463 DS V EG S+ ++ + +RR I + ++ L+ +FA + PTR ++E L+ Sbjct: 155 DSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA 214 Query: 464 TELGISFEKIDKWFKNTR 517 E G++ I WF+N R Sbjct: 215 QETGLNMRVIQVWFQNRR 232
>LHX1_MESAU (P63008) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) (Homeobox protein LMX-2) Length = 406 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVKENLS 463 DS V EG S+ ++ + +RR I + ++ L+ +FA + PTR ++E L+ Sbjct: 155 DSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA 214 Query: 464 TELGISFEKIDKWFKNTR 517 E G++ I WF+N R Sbjct: 215 QETGLNMRVIQVWFQNRR 232
>LHX3_BRARE (Q90421) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)| Length = 398 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/84 (28%), Positives = 37/84 (44%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 + K E +R I + ++ L+ ++ S P R V+E LSTE G+ + W Sbjct: 142 YETAKQREADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSTETGLDMRVVQVW 201 Query: 503 FKNTRCAALRDRKAEGNSPCCWSQ 574 F+N R R +K G W Q Sbjct: 202 FQNRRAKEKRLKKDAGRQR--WGQ 223
>LHX1_HUMAN (P48742) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) Length = 406 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVKENLS 463 DS V E S+ ++ + +RR I + ++ L+ +FA + PTR ++E L+ Sbjct: 155 DSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA 214 Query: 464 TELGISFEKIDKWFKNTR 517 E G++ I WF+N R Sbjct: 215 QETGLNMRVIQVWFQNRR 232
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3703 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Frame = +2 Query: 353 QPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAA 526 +PQR K R I PE +++L + + PTR++ ++++ E+G+ + WF+NTR Sbjct: 2637 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRA-- 2694 Query: 527 LRDRKAE 547 R+RK + Sbjct: 2695 -RERKGQ 2700 Score = 34.3 bits (77), Expect = 0.26 Identities = 19/69 (27%), Positives = 37/69 (53%) Frame = +2 Query: 353 QPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALR 532 Q +R RI + ++VLR+ F + P+ E + ++ + G+ + I WF+NT + Sbjct: 2143 QQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNT---LFK 2199 Query: 533 DRKAEGNSP 559 +R+ +SP Sbjct: 2200 ERQRNKDSP 2208
>LHX3_XENLA (P36200) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)| (xLIM-3) Length = 395 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/84 (27%), Positives = 37/84 (44%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 + K E +R I + ++ L+ ++ S P R V+E LS+E G+ + W Sbjct: 142 YETAKQREAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQVW 201 Query: 503 FKNTRCAALRDRKAEGNSPCCWSQ 574 F+N R R +K G W Q Sbjct: 202 FQNRRAKEKRLKKDAGRQR--WGQ 223
>LHX3_CHICK (P53412) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)| Length = 395 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/84 (27%), Positives = 37/84 (44%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 + K E +R I + ++ L+ ++ S P R V+E LS+E G+ + W Sbjct: 142 YETAKQREAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQVW 201 Query: 503 FKNTRCAALRDRKAEGNSPCCWSQ 574 F+N R R +K G W Q Sbjct: 202 FQNRRAKEKRLKKDAGRQR--WGQ 223
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Frame = +2 Query: 353 QPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAA 526 +PQR K R I PE +++L + + PTR++ ++++ E+G+ + WF+NTR Sbjct: 2646 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRA-- 2703 Query: 527 LRDRKAE 547 R+RK + Sbjct: 2704 -RERKGQ 2709 Score = 34.3 bits (77), Expect = 0.26 Identities = 19/69 (27%), Positives = 37/69 (53%) Frame = +2 Query: 353 QPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALR 532 Q +R RI + ++VLR+ F + P+ E + ++ + G+ + I WF+NT + Sbjct: 2150 QQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNT---LFK 2206 Query: 533 DRKAEGNSP 559 +R+ +SP Sbjct: 2207 ERQRNKDSP 2215
>LHX3_MOUSE (P50481) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)| (Homeobox protein P-LIM) (LIM homeobox protein 3) Length = 400 Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/84 (27%), Positives = 37/84 (44%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 + K E +R I + ++ L+ ++ S P R V+E LS+E G+ + W Sbjct: 148 YETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVW 207 Query: 503 FKNTRCAALRDRKAEGNSPCCWSQ 574 F+N R R +K G W Q Sbjct: 208 FQNRRAKEKRLKKDAGRQR--WGQ 229
>LHX3_PIG (O97581) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)| (Homeobox protein P-LIM) (LIM homeobox protein 3) (Fragment) Length = 383 Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/84 (27%), Positives = 37/84 (44%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 + K E +R I + ++ L+ ++ S P R V+E LS+E G+ + W Sbjct: 130 YETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVW 189 Query: 503 FKNTRCAALRDRKAEGNSPCCWSQ 574 F+N R R +K G W Q Sbjct: 190 FQNRRAKEKRLKKDAGRQR--WGQ 211
>LHX3_HUMAN (Q9UBR4) LIM/homeobox protein Lhx3| Length = 397 Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/84 (27%), Positives = 37/84 (44%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 + K E +R I + ++ L+ ++ S P R V+E LS+E G+ + W Sbjct: 145 YETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVW 204 Query: 503 FKNTRCAALRDRKAEGNSPCCWSQ 574 F+N R R +K G W Q Sbjct: 205 FQNRRAKEKRLKKDAGRQR--WGQ 226
>LHX1_CHICK (P53411) LIM/homeobox protein Lhx1 (Homeobox protein LIM-1)| Length = 406 Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVKENLS 463 DS V E S+ ++ + +RR I + ++ L+ +FA + PTR ++E L+ Sbjct: 155 DSESANVSDKETGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA 214 Query: 464 TELGISFEKIDKWFKNTR 517 E G++ I WF+N R Sbjct: 215 QETGLNMRVIQVWFQNRR 232
>Y749_MIMIV (Q5UP03) Putative homeobox protein R749| Length = 224 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/79 (24%), Positives = 41/79 (51%) Frame = +2 Query: 305 VKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISF 484 +K + +K Q+ K R+ E +L ++++ P+ E+++ L+ ++G + Sbjct: 143 IKKSTSEKKTSPKKKTTSQQIKRVRLSDEERNILESQYSKNNFPSPEIRDELAKKIGKTP 202 Query: 485 EKIDKWFKNTRCAALRDRK 541 ++ WF+N RC +DRK Sbjct: 203 RQVQIWFQNKRC---KDRK 218
>LHX4_MOUSE (P53776) LIM/homeobox protein Lhx4| Length = 367 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +2 Query: 317 EGFSDVKSNEKVQP-QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKI 493 E + K N+ + +R I + ++ L+ ++ S P R V+E LS+E G+ + Sbjct: 119 EDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVV 178 Query: 494 DKWFKNTRCAALRDRKAEG 550 WF+N R R +K G Sbjct: 179 QVWFQNRRAKEKRLKKDAG 197
>LHX4_HUMAN (Q969G2) LIM/homeobox protein Lhx4| Length = 367 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +2 Query: 317 EGFSDVKSNEKVQP-QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKI 493 E + K N+ + +R I + ++ L+ ++ S P R V+E LS+E G+ + Sbjct: 119 EDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVV 178 Query: 494 DKWFKNTRCAALRDRKAEG 550 WF+N R R +K G Sbjct: 179 QVWFQNRRAKEKRLKKDAG 197
>ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2| Length = 1427 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +2 Query: 353 QPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAA 526 +P R K R I PE +++L + + + PTR++ + +S E+G+ + WF+NTR Sbjct: 708 EPPRDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRA-- 765 Query: 527 LRDRKAEGNS 556 R+RK + S Sbjct: 766 -RERKGQFRS 774 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 QRR ++ +++++ + PT + E L E+G+ I WF+N R +++ Sbjct: 920 QRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARA---KEK 976 Query: 539 KAE 547 KA+ Sbjct: 977 KAK 979
>LIN11_CAEEL (P20154) Protein lin-11 (Abnormal cell lineage protein 11)| Length = 405 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +2 Query: 299 VGVKSAEGFSDVKSNEKVQPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTEL 472 VG+ EG +++ +R+ R I + ++ L+ +FA + PTR ++E L+ E Sbjct: 219 VGLDDGEGDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAET 278 Query: 473 GISFEKIDKWFKNTR 517 G++ I WF+N R Sbjct: 279 GLNMRVIQVWFQNRR 293
>PAX7_MOUSE (P47239) Paired box protein Pax-7| Length = 503 Score = 41.2 bits (95), Expect = 0.002 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Frame = +2 Query: 206 FGKLTDNEKQSEDEDWGTSNKRKKRRVDS--AGVGVKSAEGFSDVKSNEKV---QPQRRK 370 FGK D+E+ + E+ G K+ K +D G + EG SDV+S + + QRR Sbjct: 162 FGKKEDDEEGDKKEEDG--EKKAKHSIDGILGDKGNRLDEG-SDVESEPDLPLKRKQRRS 218 Query: 371 LFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEG 550 E ++ L K+F + P +E L+ ++ ++ WF N R R RK G Sbjct: 219 RTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRA---RWRKQAG 275
>LHX1_XENLA (P29674) LIM/homeobox protein Lhx1 (Homeobox protein LIM-1)| (xLIM-1) Length = 403 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVKENLS 463 DS V E + ++ + +RR I + ++ L+ +FA + PTR ++E L+ Sbjct: 154 DSESANVSDKEAGINENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA 213 Query: 464 TELGISFEKIDKWFKNTR 517 E G++ I WF+N R Sbjct: 214 QETGLNMRVIQVWFQNRR 231
>ESX1L_HUMAN (Q8N693) Extraembryonic, spermatogenesis, homeobox 1-like protein| Length = 406 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/109 (22%), Positives = 50/109 (45%) Frame = +2 Query: 215 LTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEA 394 LT E+Q E+ + ++ + G + AEG + + + +RR+ Sbjct: 91 LTKPEQQQEEPPLLELKQEQEEPPQTTVEGPQPAEGPQTAEGPQPPERKRRRRTAFTQFQ 150 Query: 395 VQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRK 541 +Q L F ES+ P +E L+ L ++ +++ WF+N R R+++ Sbjct: 151 LQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWKRNQR 199
>HM14_CAEEL (P20271) Homeobox protein ceh-14| Length = 351 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/63 (28%), Positives = 34/63 (53%) Frame = +2 Query: 362 RRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRK 541 +R I ++++ L++++ S P R V+E L++E G+ + WF+N R R +K Sbjct: 181 KRPRTTISAKSLETLKQAYQTSSKPARHVREQLASETGLDMRVVQVWFQNRRAKEKRLKK 240 Query: 542 AEG 550 G Sbjct: 241 DAG 243
>LMX1B_MOUSE (O88609) LIM homeobox transcription factor 1 beta (LIM/homeobox| protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2) Length = 372 Score = 40.4 bits (93), Expect = 0.004 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Frame = +2 Query: 179 DYKRLNEEMFGKLTDNEK---QSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEK 349 DY++ +++ ++ +E +SEDED G K + S G G + + Sbjct: 145 DYEK-EKDLLSSVSPDESDSVKSEDED-GDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTI 202 Query: 350 VQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 + Q+R+ F+ SF S P R+V+E L+ E G+S + WF+N R Sbjct: 203 LTTQQRRAFKA----------SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQR 248
>LIM_HALRO (Q25132) LIM/homeobox protein LIM (HRLIM)| Length = 514 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/63 (28%), Positives = 33/63 (52%) Frame = +2 Query: 362 RRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRK 541 +R I + ++ L+ ++ +S P R V+E LS+E G+ + WF+N R R ++ Sbjct: 411 KRPRTTITAKQLETLKSAYNQSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRIKR 470 Query: 542 AEG 550 G Sbjct: 471 DTG 473
>PROP1_ALOBE (Q3LU38) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 226 Score = 40.4 bits (93), Expect = 0.004 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Frame = +2 Query: 260 SNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQV--LRKSFAESEL 433 S+ R++ SAGVG FS + ++ +P R+ R AVQ+ L +F ++ Sbjct: 38 SSAPPSRKLPSAGVG---RPRFSP-QGGQRSRPHSRRRHRTTFSAVQLEQLESAFGRNQY 93 Query: 434 PTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 P +E+L+ + G+S +I WF+N R + RK E Sbjct: 94 PDIWARESLARDTGLSEARIQVWFQNRRA---KQRKQE 128
>LMX1B_HUMAN (O60663) LIM homeobox transcription factor 1 beta (LIM/homeobox| protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2) Length = 379 Score = 40.4 bits (93), Expect = 0.004 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Frame = +2 Query: 179 DYKRLNEEMFGKLTDNEK---QSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEK 349 DY++ +++ ++ +E +SEDED G K + S G G + + Sbjct: 145 DYEK-EKDLLSSVSPDESDSVKSEDED-GDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTI 202 Query: 350 VQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 + Q+R+ F+ SF S P R+V+E L+ E G+S + WF+N R Sbjct: 203 LTTQQRRAFKA----------SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQR 248
>OTP_MOUSE (O09113) Homeobox protein orthopedia| Length = 325 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/67 (31%), Positives = 36/67 (53%) Frame = +2 Query: 353 QPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALR 532 Q Q+R R P + L +SFA++ P ++E L+ +G++ ++ WF+N R A + Sbjct: 102 QKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRR-AKWK 160 Query: 533 DRKAEGN 553 RK N Sbjct: 161 KRKKTTN 167
>LMX1B_MESAU (Q60564) LIM homeobox transcription factor 1 beta (LIM/homeobox| protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2) (Fragment) Length = 369 Score = 40.4 bits (93), Expect = 0.004 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Frame = +2 Query: 179 DYKRLNEEMFGKLTDNEK---QSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEK 349 DY++ +++ ++ +E +SEDED G K G G +S G D K + Sbjct: 135 DYEK-EKDLLSSVSPDESDSVKSEDED-GDMKPAK-------GQGSQSKGGGDDGKDPRR 185 Query: 350 VQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 P+R + + + + + SF S P R+V+E L+ E G+S + WF+N R Sbjct: 186 --PKRPRTI-LTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQR 238
>PAX7_HUMAN (P23759) Paired box protein Pax-7 (HUP1)| Length = 520 Score = 40.0 bits (92), Expect = 0.005 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 5/120 (4%) Frame = +2 Query: 206 FGKLTDNEKQSEDEDWGTSNKRKKRRVDS--AGVGVKSAEGFSDVKSNEKV---QPQRRK 370 FGK + ++ + ED G K+ K +D G + EG SDV+S + + QRR Sbjct: 164 FGKKEEEDEADKKEDDG--EKKAKHSIDGILGDKGNRLDEG-SDVESEPDLPLKRKQRRS 220 Query: 371 LFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEG 550 E ++ L K+F + P +E L+ ++ ++ WF N R R RK G Sbjct: 221 RTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRA---RWRKQAG 277
>ZHX3_MOUSE (Q8C0Q2) Zinc finger and homeobox protein 3 (Triple homeobox 1| protein) Length = 951 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = +2 Query: 386 PEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRD--RKAEGNSP 559 PE ++VL SFA++ LP E + L +E ++ +ID WF R + +KA+G+ P Sbjct: 616 PEQLRVLENSFAQNPLPPEEELDRLRSETKMTRREIDGWFSERRKKVNTEETKKADGHMP 675 Score = 32.7 bits (73), Expect = 0.76 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +2 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR--CAALRDRKA 544 E + L+ SF ++ P + E+L+ G+S ++ KWF + R C L+ +A Sbjct: 499 EQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRA 552
>AL_DROME (Q06453) Homeobox protein aristaless| Length = 408 Score = 39.7 bits (91), Expect = 0.006 Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Frame = +2 Query: 290 SAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQV--LRKSFAESELPTREVKENLS 463 S G ++G SD +++E ++++ +R + Q+ L K+F+ + P +E L+ Sbjct: 60 SGGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELA 119 Query: 464 TELGISFEKIDKWFKNTRCAALRDRK 541 ++G++ +I WF+N R + K Sbjct: 120 MKIGLTEARIQVWFQNRRAKWRKQEK 145
>LMX1A_HUMAN (Q8TE12) LIM homeobox transcription factor 1 alpha (LIM/homeobox| protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1) Length = 382 Score = 39.3 bits (90), Expect = 0.008 Identities = 26/90 (28%), Positives = 43/90 (47%) Frame = +2 Query: 248 DWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAES 427 D G S+ + + G G +AE D K +P+R + + + + + SF S Sbjct: 164 DSGKSDDEESLCKSAHGAGKGTAEEGKDHK-----RPKRPRTI-LTTQQRRAFKASFEVS 217 Query: 428 ELPTREVKENLSTELGISFEKIDKWFKNTR 517 P R+V+E L+ E G+S + WF+N R Sbjct: 218 SKPCRKVRETLAAETGLSVRVVQVWFQNQR 247
>LHX5_RAT (P61376) LIM/homeobox protein Lhx5 (Homeobox protein LIM-2)| Length = 402 Score = 39.3 bits (90), Expect = 0.008 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 380 IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 I + ++ L+ +FA + PTR ++E L+ E G++ I WF+N R Sbjct: 187 IKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRR 232
>LHX5_MOUSE (P61375) LIM/homeobox protein Lhx5| Length = 402 Score = 39.3 bits (90), Expect = 0.008 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 380 IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 I + ++ L+ +FA + PTR ++E L+ E G++ I WF+N R Sbjct: 187 IKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRR 232
>LHX5_HUMAN (Q9H2C1) LIM/homeobox protein Lhx5| Length = 402 Score = 39.3 bits (90), Expect = 0.008 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 380 IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 I + ++ L+ +FA + PTR ++E L+ E G++ I WF+N R Sbjct: 187 IKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRR 232
>LHX1_BRARE (Q90476) LIM/homeobox protein Lhx1 (Homeobox protein LIM-1)| Length = 405 Score = 39.3 bits (90), Expect = 0.008 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 380 IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 I + ++ L+ +FA + PTR ++E L+ E G++ I WF+N R Sbjct: 186 IKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRR 231
>HBX4_ECHGR (P55813) Homeobox protein EgHBX4 (Fragment)| Length = 60 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/58 (36%), Positives = 33/58 (56%) Frame = +2 Query: 362 RRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRD 535 RR+ PE ++ + + F + P ++E L++ LGI+ KI WFKN R A LR+ Sbjct: 2 RRERTIYTPEQLEAMEEVFGVNRYPDVSMREELASRLGINESKIQVWFKNRR-AKLRN 58
>SHOX2_HUMAN (O60902) Short stature homeobox protein 2 (Paired-related homeobox| protein SHOT) (Homeobox protein Og12X) Length = 331 Score = 38.5 bits (88), Expect = 0.014 Identities = 26/86 (30%), Positives = 41/86 (47%) Frame = +2 Query: 260 SNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPT 439 S + K R+ D+ G+ EG + +K QRR E + L + F E+ P Sbjct: 117 SPELKDRKEDAKGM---EDEGQTKIK-------QRRSRTNFTLEQLNELERLFDETHYPD 166 Query: 440 REVKENLSTELGISFEKIDKWFKNTR 517 ++E LS LG+S ++ WF+N R Sbjct: 167 AFMREELSQRLGLSEARVQVWFQNRR 192
>LMX1A_MOUSE (Q9JKU8) LIM homeobox transcription factor 1 alpha (LIM/homeobox| protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1) Length = 382 Score = 38.5 bits (88), Expect = 0.014 Identities = 25/90 (27%), Positives = 43/90 (47%) Frame = +2 Query: 248 DWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAES 427 D G S+ + + G G ++E D K +P+R + + + + + SF S Sbjct: 164 DSGKSDDEESLCKSAHGAGKGASEDGKDHK-----RPKRPRTI-LTTQQRRAFKASFEVS 217 Query: 428 ELPTREVKENLSTELGISFEKIDKWFKNTR 517 P R+V+E L+ E G+S + WF+N R Sbjct: 218 SKPCRKVRETLAAETGLSVRVVQVWFQNQR 247
>LMX1A_MESAU (Q04650) LIM homeobox transcription factor 1 alpha (LIM/homeobox| protein LMX1A) (LMX-1) (LIM-homeobox protein 1) Length = 382 Score = 38.5 bits (88), Expect = 0.014 Identities = 25/90 (27%), Positives = 43/90 (47%) Frame = +2 Query: 248 DWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAES 427 D G S+ + + G G ++E D K +P+R + + + + + SF S Sbjct: 164 DSGKSDDEESLCKSAHGAGKGTSEDGKDHK-----RPKRPRTI-LTTQQRRAFKASFEVS 217 Query: 428 ELPTREVKENLSTELGISFEKIDKWFKNTR 517 P R+V+E L+ E G+S + WF+N R Sbjct: 218 SKPCRKVRETLAAETGLSVRVVQVWFQNQR 247
>SHOX2_RAT (O35750) Short stature homeobox protein 2 (Paired family| homeodomain protein Prx3) (Fragment) Length = 237 Score = 38.5 bits (88), Expect = 0.014 Identities = 26/86 (30%), Positives = 41/86 (47%) Frame = +2 Query: 260 SNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPT 439 S + K R+ D+ G+ EG + +K QRR E + L + F E+ P Sbjct: 23 SPELKDRKEDAKGM---EDEGQTKIK-------QRRSRTNFTLEQLNELERLFDETHYPD 72 Query: 440 REVKENLSTELGISFEKIDKWFKNTR 517 ++E LS LG+S ++ WF+N R Sbjct: 73 AFMREELSQRLGLSEARVQVWFQNRR 98
>YRM6_CAEEL (Q09602) Hypothetical homeobox protein R06F6.6 in chromosome II| Length = 416 Score = 38.5 bits (88), Expect = 0.014 Identities = 24/72 (33%), Positives = 32/72 (44%) Frame = +2 Query: 341 NEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRC 520 NEK RRK PE L + RE + L+ L +S ++ WF+N R Sbjct: 127 NEK---SRRKRTTFSPEQATRLEAEYIGDSYMAREKRHLLAQSLKLSENQVKTWFQNRRA 183 Query: 521 AALRDRKAEGNS 556 RDRK+E S Sbjct: 184 KDKRDRKSENAS 195
>ZHX2_MOUSE (Q8C0C0) Zinc fingers and homeoboxes protein 2 (Zinc finger and| homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP) Length = 836 Score = 38.1 bits (87), Expect = 0.018 Identities = 16/44 (36%), Positives = 27/44 (61%) Frame = +2 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRC 520 E V +LR +FA ++ PT + + L+ + G+ +I +WFK RC Sbjct: 638 EQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVRWFKENRC 681 Score = 33.1 bits (74), Expect = 0.58 Identities = 24/71 (33%), Positives = 31/71 (43%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 F+ K EK Q Q ++ L SF +S PT+ E L E +S +ID W Sbjct: 528 FAPQKFKEKSQGQ-----------LKTLEDSFLKSSFPTQAEVERLRVETKLSRREIDSW 576 Query: 503 FKNTRCAALRD 535 F R LRD Sbjct: 577 FSERR--KLRD 585
>SHOX2_MOUSE (P70390) Short stature homeobox protein 2 (Homeobox protein Og12X)| (OG-12) (Paired family homeodomain protein Prx3) Length = 331 Score = 38.1 bits (87), Expect = 0.018 Identities = 26/86 (30%), Positives = 41/86 (47%) Frame = +2 Query: 260 SNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPT 439 S + K R+ D+ G+ EG + +K QRR E + L + F E+ P Sbjct: 117 SPELKDRKDDAKGM---EDEGQTKIK-------QRRSRTNFTLEQLNELERLFDETHYPD 166 Query: 440 REVKENLSTELGISFEKIDKWFKNTR 517 ++E LS LG+S ++ WF+N R Sbjct: 167 AFMREELSQRLGLSEARVQVWFQNRR 192
>SHOX_HUMAN (O15266) Short stature homeobox protein (Short stature| homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein) Length = 292 Score = 38.1 bits (87), Expect = 0.018 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 7/98 (7%) Frame = +2 Query: 245 EDWGTSNKRKKRRVDSAGVG---VKSAEGFSDVKSNEK----VQPQRRKLFRIPPEAVQV 403 +D ++K K + +A V + E DVKS ++ QRR E + Sbjct: 72 KDHVDNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNE 131 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 L + F E+ P ++E LS LG+S ++ WF+N R Sbjct: 132 LERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRR 169
>ZHX2_PONPY (Q5R7F2) Zinc fingers and homeoboxes protein 2 (Zinc finger and| homeodomain protein 2) Length = 837 Score = 38.1 bits (87), Expect = 0.018 Identities = 16/44 (36%), Positives = 27/44 (61%) Frame = +2 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRC 520 E V +LR +FA ++ PT + + L+ + G+ +I +WFK RC Sbjct: 638 EQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVRWFKENRC 681 Score = 35.0 bits (79), Expect = 0.15 Identities = 24/71 (33%), Positives = 32/71 (45%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 F+ K EK Q Q V++L SF +S PT+ + L E +S +ID W Sbjct: 528 FAPQKFKEKTQGQ-----------VKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSW 576 Query: 503 FKNTRCAALRD 535 F R LRD Sbjct: 577 FSERR--KLRD 585
>ZHX2_HUMAN (Q9Y6X8) Zinc fingers and homeoboxes protein 2 (Zinc finger and| homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP) Length = 837 Score = 38.1 bits (87), Expect = 0.018 Identities = 16/44 (36%), Positives = 27/44 (61%) Frame = +2 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRC 520 E V +LR +FA ++ PT + + L+ + G+ +I +WFK RC Sbjct: 638 EQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVRWFKENRC 681 Score = 35.0 bits (79), Expect = 0.15 Identities = 24/71 (33%), Positives = 32/71 (45%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 F+ K EK Q Q V++L SF +S PT+ + L E +S +ID W Sbjct: 528 FAPQKFKEKTQGQ-----------VKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSW 576 Query: 503 FKNTRCAALRD 535 F R LRD Sbjct: 577 FSERR--KLRD 585
>PROP1_THEGE (Q3LU41) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 226 Score = 37.7 bits (86), Expect = 0.024 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Frame = +2 Query: 278 RRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFR--IPPEAVQVLRKSFAESELPTREVK 451 RR+ AGVG FS + ++ +P R+ R P ++ L +F ++ P + Sbjct: 44 RRLPGAGVG---RPRFSP-QGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWAR 99 Query: 452 ENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 E+L+ + G+S +I WF+N R + RK E Sbjct: 100 ESLARDTGLSEARIQVWFQNRRA---KQRKQE 128
>ZHX3_HUMAN (Q9H4I2) Zinc finger and homeobox protein 3 (Triple homeobox 1| protein) Length = 956 Score = 37.7 bits (86), Expect = 0.024 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Frame = +2 Query: 386 PEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR--CAALRDRKAEGNS 556 PE ++ L SFA++ LP E + L +E ++ +ID WF R A +KAE N+ Sbjct: 621 PEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKAEENA 679 Score = 32.7 bits (73), Expect = 0.76 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +2 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR--CAALRDRKA 544 E + L+ SF ++ P + E+L+ G+S ++ KWF + R C L+ +A Sbjct: 504 EQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRA 557
>LHX5_BRARE (P52889) LIM/homeobox protein Lhx5 (Homeobox protein LIM-5)| Length = 399 Score = 37.7 bits (86), Expect = 0.024 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = +2 Query: 380 IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 I + ++ L+ +F + PTR ++E L+ E G++ I WF+N R Sbjct: 187 IKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQNRR 232
>HME60_APIME (P09075) Homeobox protein E60 (Fragment)| Length = 109 Score = 37.4 bits (85), Expect = 0.031 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = +2 Query: 326 SDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWF 505 SD + N ++R E + L++ FAE+ T ++ LS +LG++ +I WF Sbjct: 9 SDGRGNGGTPEEKRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWF 68 Query: 506 KNTRCAALRDRKAEG 550 +N R + +KA G Sbjct: 69 QNKRA---KIKKASG 80
>LHX5_XENLA (P37137) LIM/homeobox protein Lhx5 (Homeobox protein LIM-5)| (xLIM-5) (xLIM-2A) Length = 402 Score = 37.4 bits (85), Expect = 0.031 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = +2 Query: 380 IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 I + ++ L+ +F + PTR ++E L+ E G++ I WF+N R Sbjct: 187 IKAKQLETLKAAFIATPKPTRHIREQLAQETGLNMRVIQVWFQNRR 232
>PRRX1_RAT (P63014) Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related| homeobox protein 1) (rHox) Length = 245 Score = 37.4 bits (85), Expect = 0.031 Identities = 28/138 (20%), Positives = 55/138 (39%) Frame = +2 Query: 131 DDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVK 310 ++A +M+ Q + + R E G + ++ +D D S ++KKR+ Sbjct: 43 EEAGDMVAAQADESVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRK--------- 93 Query: 311 SAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEK 490 QRR +Q L + F + P V+E+L+ + ++ + Sbjct: 94 ----------------QRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEAR 137 Query: 491 IDKWFKNTRCAALRDRKA 544 + WF+N R R+ +A Sbjct: 138 VQVWFQNRRAKFRRNERA 155
>PRRX1_MOUSE (P63013) Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related| homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2) Length = 245 Score = 37.4 bits (85), Expect = 0.031 Identities = 28/138 (20%), Positives = 55/138 (39%) Frame = +2 Query: 131 DDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVK 310 ++A +M+ Q + + R E G + ++ +D D S ++KKR+ Sbjct: 43 EEAGDMVAAQADESVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRK--------- 93 Query: 311 SAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEK 490 QRR +Q L + F + P V+E+L+ + ++ + Sbjct: 94 ----------------QRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEAR 137 Query: 491 IDKWFKNTRCAALRDRKA 544 + WF+N R R+ +A Sbjct: 138 VQVWFQNRRAKFRRNERA 155
>PRRX1_HUMAN (P54821) Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related| homeobox protein 1) (Homeobox protein PHOX1) Length = 245 Score = 37.4 bits (85), Expect = 0.031 Identities = 28/138 (20%), Positives = 55/138 (39%) Frame = +2 Query: 131 DDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVK 310 ++A +M+ Q + + R E G + ++ +D D S ++KKR+ Sbjct: 43 EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRK--------- 93 Query: 311 SAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEK 490 QRR +Q L + F + P V+E+L+ + ++ + Sbjct: 94 ----------------QRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEAR 137 Query: 491 IDKWFKNTRCAALRDRKA 544 + WF+N R R+ +A Sbjct: 138 VQVWFQNRRAKFRRNERA 155
>LMX1B_CHICK (P53413) LIM/homeobox protein LMX-1.2 (Homeobox protein LMX-1)| (LIM-homeobox protein 1) (LMX) Length = 377 Score = 37.4 bits (85), Expect = 0.031 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 13/84 (15%) Frame = +2 Query: 305 VKSAEGFSDVK-----------SNEKVQPQRRKLFR--IPPEAVQVLRKSFAESELPTRE 445 VKS + DVK S++ P+R K R + + + + SF S P R+ Sbjct: 164 VKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRK 223 Query: 446 VKENLSTELGISFEKIDKWFKNTR 517 V+E L+ E G+S + WF+N R Sbjct: 224 VRETLAAETGLSVRVVQVWFQNQR 247
>PROP1_CEBAP (Q3LU40) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 226 Score = 37.0 bits (84), Expect = 0.040 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Frame = +2 Query: 260 SNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQV--LRKSFAESEL 433 S+ R+ AGVG FS + ++ +P R+ R AVQ+ L +F ++ Sbjct: 38 SSAPPSRKRPGAGVG---RPRFSP-QGGQRGRPHSRRRHRTTFSAVQLEQLESAFGRNQY 93 Query: 434 PTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 P +E+L+ + G+S +I WF+N R + RK E Sbjct: 94 PDIWARESLARDTGLSEARIQVWFQNRRA---KQRKQE 128
>SIX5_MOUSE (P70178) Homeobox protein SIX5 (DM locus-associated homeodomain| protein homolog) Length = 719 Score = 37.0 bits (84), Expect = 0.040 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNSPCCWSQ 574 L+ + + PT + K L+T G+S ++ WFKN R RDR G C S+ Sbjct: 209 LKACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRR---QRDRTGTGGGAPCKSE 262
>SIX5_HUMAN (Q8N196) Homeobox protein SIX5 (DM locus-associated homeodomain| protein) Length = 739 Score = 37.0 bits (84), Expect = 0.040 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRK-AEGNSPC 562 L+ + + PT + K L+T G+S ++ WFKN R RDR A G +PC Sbjct: 216 LKACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRR---QRDRTGAGGGAPC 266
>MATA1_PICAN (Q707Y6) Mating-type protein A1 (MATa1 transcription factor)| Length = 181 Score = 36.6 bits (83), Expect = 0.053 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Frame = +2 Query: 296 GVGVKSAEGFSDVKSNEKVQP----------QRRKLFRIPPEAVQVLRKSFAESELPTRE 445 G ++ AE +++++ E++ ++K IP + ++L K+F P + Sbjct: 91 GFAIEKAEVETEMRNTEELDVYKECLVSECFDKKKRRHIPESSKELLEKAFKVKRFPNSK 150 Query: 446 VKENLSTELGISFEKIDKWFKNTR 517 +E ++ E GIS ++ WF N R Sbjct: 151 ERERIARECGISPLQVRVWFTNKR 174
>LHX6_MOUSE (O88706) LIM/homeobox protein Lhx6| Length = 361 Score = 36.6 bits (83), Expect = 0.053 Identities = 19/71 (26%), Positives = 34/71 (47%) Frame = +2 Query: 305 VKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISF 484 V + EG + + + +P +R E +QV++ FA+ P + + L+ G+S Sbjct: 219 VLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSR 278 Query: 485 EKIDKWFKNTR 517 I WF+N R Sbjct: 279 RVIQVWFQNCR 289
>HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine zipper protein| ATHB-10) (HD-ZIP protein ATHB-10) Length = 745 Score = 36.6 bits (83), Expect = 0.053 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Frame = +2 Query: 188 RLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRR 367 R E++ G+ D+E++ E+ED NK +R +R+ Sbjct: 68 RSEEDLEGEDHDDEEE-EEEDGAAGNKGTNKR-------------------------KRK 101 Query: 368 KLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKN--TRCAALRDR 538 K R + ++ + F E+ P + ++ LS +LG++ ++ WF+N T+ A+++R Sbjct: 102 KYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQER 160
>MATA1_CANAL (Q9UW23) Mating-type-like protein A1 (MTLa1 protein)| Length = 210 Score = 36.6 bits (83), Expect = 0.053 Identities = 16/58 (27%), Positives = 32/58 (55%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 E+++ ++K R+ + L K F +++ P R +E ++ + G+S +I WF N R Sbjct: 136 EEIKKSKKKRQRLDNSTKEFLEKVFEKNKQPNRRERELIAEKHGVSLSQIRVWFTNKR 193
>HAT4_ARATH (Q05466) Homeobox-leucine zipper protein HAT4 (HD-ZIP protein 4)| (HD-ZIP protein ATHB-2) Length = 284 Score = 36.6 bits (83), Expect = 0.053 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 10/102 (9%) Frame = +2 Query: 242 DEDWGTSN----------KRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPE 391 DED G S+ KR +R D+ G + G SD + + RK R+ + Sbjct: 84 DEDAGVSSPNSTVSSSTGKRSEREEDTDPQG---SRGISDDEDGDN----SRKKLRLSKD 136 Query: 392 AVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +L ++F + + K+ L+ +LG+ +++ WF+N R Sbjct: 137 QSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRR 178
>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)| (Cut-like 2) Length = 1424 Score = 36.6 bits (83), Expect = 0.053 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%) Frame = +2 Query: 350 VQPQRRKLFRIP-------PEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFK 508 +QPQ L +I PE + LRK++ P+++ E LS +L + + WF Sbjct: 1096 LQPQDLSLLQIKKPRVVLAPEEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINWFH 1155 Query: 509 NTRCAALRDRKAEG 550 N R R+ EG Sbjct: 1156 NYRSRMRREMLVEG 1169
>HM21_CAEEL (Q22811) Homeobox protein ceh-21| Length = 495 Score = 36.6 bits (83), Expect = 0.053 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 L+KSF ++ PTRE+++ LS L + F + +F N+R Sbjct: 406 LQKSFQQNHRPTREMRQKLSATLELDFSTVGNFFMNSR 443
>PROP1_CANFA (Q9TTD8) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 226 Score = 36.6 bits (83), Expect = 0.053 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = +2 Query: 293 AGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTEL 472 +GVGV+ ++ +RR P ++ L +F ++ P +E L+ + Sbjct: 47 SGVGVRRPRLSPQGGQRGRLHSRRRHRTTFNPGQLEQLETAFGRNQYPDIWAREGLARDT 106 Query: 473 GISFEKIDKWFKNTRCAALRDRKAE 547 G+S +I WF+N R + RK E Sbjct: 107 GLSEARIQVWFQNRRA---KQRKQE 128
>LHX61_HUMAN (Q9UPM6) LIM/homeobox protein Lhx6.1 (Lhx6)| Length = 363 Score = 36.2 bits (82), Expect = 0.069 Identities = 21/80 (26%), Positives = 38/80 (47%) Frame = +2 Query: 278 RRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKEN 457 +R G G+ + EG + + + +P +R E +QV++ FA+ P + + Sbjct: 193 KRAAENGNGL-TLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQK 251 Query: 458 LSTELGISFEKIDKWFKNTR 517 L+ G+S I WF+N R Sbjct: 252 LADMTGLSRRVIQVWFQNCR 271
>VSX2_BRARE (O42477) Visual system homeobox 2 (Transcription factor VSX2)| (Homeobox protein ALX) Length = 395 Score = 36.2 bits (82), Expect = 0.069 Identities = 28/116 (24%), Positives = 51/116 (43%) Frame = +2 Query: 209 GKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPP 388 G L N+ S D D +S++RK + S + ++K + +R + Sbjct: 132 GPLEHNQSASSDSDDVSSSERKMSK--------------SSLSQSKKRKKRRHRTIFTSY 177 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 E ++ L K+F E+ P +E L+ + + ++I WF+N R + K G S Sbjct: 178 E-LEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS 232
>MEC3_CAEEL (P09088) Mechanosensory protein 3| Length = 321 Score = 36.2 bits (82), Expect = 0.069 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +2 Query: 275 KRRVDSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVK 451 K+ VD+ G + FSD ++ +RR I + VL + F+ + P++ + Sbjct: 189 KKEVDAYGYNFEHYS-FSDFCDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHAR 247 Query: 452 ENLSTELGISFEKIDKWFKNTR 517 L+ E G+S I WF+N R Sbjct: 248 AKLALETGLSMRVIQVWFQNRR 269
>MEC3_CAEBR (P34764) Mechanosensory protein 3| Length = 318 Score = 35.8 bits (81), Expect = 0.090 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +2 Query: 275 KRRVDSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVK 451 K+ VD+ G + FSD ++ +RR I + VL + F+ + P++ + Sbjct: 186 KKEVDAYGYNFEHYS-FSDFCDDDSRMLKRRGPRTTIRQNQLDVLNEMFSNTPKPSKHAR 244 Query: 452 ENLSTELGISFEKIDKWFKNTR 517 L+ E G+S I WF+N R Sbjct: 245 AKLALETGLSMRVIQVWFQNRR 266
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12| Length = 454 Score = 35.8 bits (81), Expect = 0.090 Identities = 21/76 (27%), Positives = 37/76 (48%) Frame = +2 Query: 62 SADFTDAEGFYHTNSNLGIDSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSE 241 SAD +D E Y+ SN G DS D + E + K + + + L + F KL + + + Sbjct: 65 SADESDEEEEYNDESNEGDDSDDAEQTESTS----KNDDENENLEAQYFDKLLSEQNEEQ 120 Query: 242 DEDWGTSNKRKKRRVD 289 DE +S+ + + + Sbjct: 121 DESKESSDAKSSKAAE 136
>PROP1_HUMAN (O75360) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 226 Score = 35.4 bits (80), Expect = 0.12 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Frame = +2 Query: 278 RRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFR--IPPEAVQVLRKSFAESELPTREVK 451 RR+ AG G FS + ++ +P R+ R P ++ L +F ++ P + Sbjct: 44 RRLPGAGGG---RSRFSP-QGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWAR 99 Query: 452 ENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 E+L+ + G+S +I WF+N R + RK E Sbjct: 100 ESLARDTGLSEARIQVWFQNRRA---KQRKQE 128
>PEPP1_HUMAN (Q8NHV9) Paired-like homeobox protein PEPP-1 (Ovary-, testis- and| epididymis-expressed gene protein) Length = 184 Score = 35.4 bits (80), Expect = 0.12 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCA 523 E +QP+ R+ + V+ L F ++ P + L+ LG++ +K+ WFKN R Sbjct: 99 ENMQPRTRRT-KFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 157 Query: 524 ALRDRK 541 R ++ Sbjct: 158 CRRHQR 163
>GSC_HUMAN (P56915) Homeobox protein goosecoid| Length = 257 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 +RR E ++ L F E++ P +E L+ ++ + EK++ WFKN R R + Sbjct: 160 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQK 219 Query: 539 KA 544 ++ Sbjct: 220 RS 221
>PROP1_GORGO (Q3LU39) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 225 Score = 35.4 bits (80), Expect = 0.12 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Frame = +2 Query: 278 RRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFR--IPPEAVQVLRKSFAESELPTREVK 451 RR+ AG G FS + ++ +P R+ R P ++ L +F ++ P + Sbjct: 44 RRLPGAGGG---RSRFSP-QGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWAR 99 Query: 452 ENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 E+L+ + G+S +I WF+N R + RK E Sbjct: 100 ESLARDTGLSEARIQVWFQNRRA---KQRKQE 128
>GSC_MOUSE (Q02591) Homeobox protein goosecoid| Length = 256 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 +RR E ++ L F E++ P +E L+ ++ + EK++ WFKN R R + Sbjct: 160 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQK 219 Query: 539 KA 544 ++ Sbjct: 220 RS 221
>VSX1_BOVIN (Q9GMA3) Visual system homeobox 1 (Transcription factor VSX1)| (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX) Length = 365 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 6/105 (5%) Frame = +2 Query: 260 SNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQP------QRRKLFRIPPEAVQVLRKSFA 421 S R+KR S V + S+ +S+ K P +RR ++ L K+F+ Sbjct: 128 SAARQKR---SESVSTSDEDSPSEDRSDRKASPAPSKRKKRRHRTVFTAHQLEELEKAFS 184 Query: 422 ESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 E+ P +E L+ + + ++I WF+N R + K G S Sbjct: 185 EAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKRWGGS 229
>SNX4_KLULA (Q6CTQ0) Sorting nexin-4 (Autophagy-related protein 24)| Length = 400 Score = 35.4 bits (80), Expect = 0.12 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Frame = +2 Query: 134 DAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKS 313 +A + L + +K++DY+ L+E + + NEK + +G+ N K + + AG+ + Sbjct: 262 EALKQLIRLKDQKQIDYEELSEYLTRSI--NEKNNLLSGYGSGNYFKSKLEELAGINQEM 319 Query: 314 AEGFSDVKSNEKVQ---PQRRKLFRIPPE-AVQVLRKSFAESELPTREVKENLS--TELG 475 A K +VQ + K ++ E +VL++ ++ T E+K++L+ + Sbjct: 320 ARRDKIAKLETRVQSLTDEVEKSKQVADEFEKEVLKEVEQFEQIKTLELKDSLAALAQKH 379 Query: 476 ISF--EKIDKWFK 508 I F + ++KW K Sbjct: 380 IDFYDDMVEKWSK 392
>GSC_CHICK (P53545) Homeobox protein goosecoid| Length = 245 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 +RR E ++ L F E++ P +E L+ ++ + EK++ WFKN R R + Sbjct: 150 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQK 209 Query: 539 KA 544 ++ Sbjct: 210 RS 211
>HMEN_DROME (P02836) Segmentation polarity homeobox protein engrailed| Length = 552 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/58 (29%), Positives = 31/58 (53%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +K ++R E + L++ F E+ T ++ LS+ELG++ +I WF+N R Sbjct: 449 DKTNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 506
>TGIF_PANTR (Q5IS58) 5'-TG-3'-interacting factor (Homeobox protein TGIF)| Length = 401 Score = 35.4 bits (80), Expect = 0.12 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Frame = +2 Query: 185 KRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQR 364 +RL E M G + + ++EDED S SAG G +R Sbjct: 127 RRLMETMKGIVAASGSETEDED---SMDIPLDLSSSAGSG------------------KR 165 Query: 365 RKLFRIPPEAVQVLRKSFAE---SELPTREVKENLSTELGISFEKIDKWFKNTRCAALRD 535 R+ +P E+VQ+LR E + P+ + K LS + +S ++ WF N R L D Sbjct: 166 RRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 225 Query: 536 R-KAEGNSP 559 + +G P Sbjct: 226 MLRKDGKDP 234
>HMIN_BOMMO (P27610) Homeobox protein invected| Length = 476 Score = 35.4 bits (80), Expect = 0.12 Identities = 25/74 (33%), Positives = 40/74 (54%) Frame = +2 Query: 329 DVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFK 508 D SN++ +P R F P A L+ FAE+ T +++L+ ELG++ +I WF+ Sbjct: 366 DTASNDEKRP--RTAFSGPQLAR--LKHEFAENRYLTERRRQSLAAELGLAEAQIKIWFQ 421 Query: 509 NTRCAALRDRKAEG 550 N R + +KA G Sbjct: 422 NKRA---KIKKASG 432
>HMEN_DROVI (P09145) Segmentation polarity homeobox protein engrailed| Length = 584 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/58 (29%), Positives = 31/58 (53%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +K ++R E + L++ F E+ T ++ LS+ELG++ +I WF+N R Sbjct: 481 DKTNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 538
>GSC_BRARE (P53544) Homeobox protein goosecoid (ZGSC)| Length = 240 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 +RR E ++ L F E++ P +E L+ ++ + EK++ WFKN R R + Sbjct: 146 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQK 205 Query: 539 KA 544 ++ Sbjct: 206 RS 207
>PROP1_BOVIN (Q8MJI9) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 226 Score = 35.0 bits (79), Expect = 0.15 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Frame = +2 Query: 302 GVKSAEGFSDVKSNEKVQPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTELG 475 GV+ ++ ++ +P R+ R P ++ L +F ++ P +E+L+ + G Sbjct: 48 GVRVGRPKLSLQGVQRGRPHSRRRHRTTFSPAQLEQLESAFGRNQYPDIWARESLAQDTG 107 Query: 476 ISFEKIDKWFKNTRCAALRDRKAE 547 +S +I WF+N R + RK E Sbjct: 108 LSEARIQVWFQNRRA---KQRKQE 128
>PITX2_HUMAN (Q99697) Pituitary homeobox 2 (RIEG bicoid-related homeobox| transcription factor) (Solurshin) (ALL1-responsive protein ARP1) Length = 317 Score = 35.0 bits (79), Expect = 0.15 Identities = 25/115 (21%), Positives = 44/115 (38%) Frame = +2 Query: 221 DNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQ 400 D +Q ++ED G + KK+R QRR+ + +Q Sbjct: 64 DKSQQGKNEDVGAEDPSKKKR-------------------------QRRQRTHFTSQQLQ 98 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNSPCC 565 L +F + P +E ++ ++ ++ WFKN R A R R+ + C Sbjct: 99 ELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRR-AKWRKRERNQQAELC 152
>GSCB_XENLA (P53546) Homeobox protein goosecoid isoform B| Length = 243 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/62 (27%), Positives = 31/62 (50%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 +RR E ++ L F E++ P +E L+ + + EK++ WFKN R R + Sbjct: 148 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARRVHLREEKVEVWFKNRRAKWRRQK 207 Query: 539 KA 544 ++ Sbjct: 208 RS 209
>GSCA_XENLA (P29454) Homeobox protein goosecoid isoform A| Length = 243 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/62 (27%), Positives = 31/62 (50%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 +RR E ++ L F E++ P +E L+ + + EK++ WFKN R R + Sbjct: 148 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARRVHLREEKVEVWFKNRRAKWRRQK 207 Query: 539 KA 544 ++ Sbjct: 208 RS 209
>VSX1_HUMAN (Q9NZR4) Visual system homeobox 1 (Transcription factor VSX1)| (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX) Length = 365 Score = 35.0 bits (79), Expect = 0.15 Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 4/99 (4%) Frame = +2 Query: 272 KKRRVDSAGVGVKSA--EGFSDVKSNEKVQPQRRKLFRIPPEAVQV--LRKSFAESELPT 439 +++R DS + + E +D+K++ + ++++ R A Q+ L K+F+E+ P Sbjct: 131 RQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPD 190 Query: 440 REVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 +E L+ + + ++I WF+N R + K G S Sbjct: 191 VYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS 229
>LHX61_MOUSE (Q9R1R0) LIM/homeobox protein Lhx6.1| Length = 363 Score = 35.0 bits (79), Expect = 0.15 Identities = 18/67 (26%), Positives = 31/67 (46%) Frame = +2 Query: 317 EGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKID 496 EG + + + +P +R E +QV++ FA+ P + + L+ G S I Sbjct: 205 EGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGFSRRVIQ 264 Query: 497 KWFKNTR 517 WF+N R Sbjct: 265 VWFQNCR 271
>TGIF_HUMAN (Q15583) 5'-TG-3'-interacting factor (Homeobox protein TGIF)| Length = 401 Score = 35.0 bits (79), Expect = 0.15 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Frame = +2 Query: 185 KRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQR 364 +RL E M G + + ++EDED S SAG G +R Sbjct: 127 RRLLETMKGIVAASGSETEDED---SMDIPLDLSSSAGSG------------------KR 165 Query: 365 RKLFRIPPEAVQVLRKSFAE---SELPTREVKENLSTELGISFEKIDKWFKNTRCAALRD 535 R+ +P E+VQ+LR E + P+ + K LS + +S ++ WF N R L D Sbjct: 166 RRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 225 Query: 536 R-KAEGNSP 559 + +G P Sbjct: 226 MLRKDGKDP 234
>RRP3_USTMA (Q4P3U9) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 551 Score = 34.7 bits (78), Expect = 0.20 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 3/88 (3%) Frame = +2 Query: 2 SPIVQXSPLYSPNDDIPGFISADFTDA---EGFYHTNSNLGIDSGDDDAAEMLTYQRPKK 172 SP V + NDD G +S D +DA E H+ S GI DDD P Sbjct: 26 SPEVSTPSTSNSNDDQDGHVSEDMSDAEEGESQEHSASGSGISDHDDDDDPSADKDSPAA 85 Query: 173 EVDYKRLNEEMFGKLTDNEKQSEDEDWG 256 + + +E+ + D+ K+ E D G Sbjct: 86 D---EEQDEKKVATIADDGKKVEFSDLG 110
>SIX2_MOUSE (Q62232) Homeobox protein SIX2 (Sine oculis homeobox homolog 2)| Length = 296 Score = 34.7 bits (78), Expect = 0.20 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 VLR+ +A + P+ K L+ G++ ++ WFKN R RDR AE Sbjct: 138 VLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR---QRDRAAE 183
>CUTL2_MOUSE (P70298) Homeobox protein cut-like 2 (Homeobox protein Cux-2)| (Cut-like 2) Length = 1426 Score = 34.7 bits (78), Expect = 0.20 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 8/100 (8%) Frame = +2 Query: 275 KRRVDSAGVGVKSAEGFSDVKSNEK-VQPQRRKLFR-------IPPEAVQVLRKSFAESE 430 KRR G G S + + +QPQ L + + P + LRK++ Sbjct: 1077 KRRYGLIGTGSDSESPAAHSECPSPCLQPQELSLMQAKKPRVVLAPAEKEALRKAYQLEP 1136 Query: 431 LPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEG 550 P+++ E LS +L + + WF N R R+ EG Sbjct: 1137 YPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRREMLVEG 1176
>TBP7_CAEEL (P54816) TAT-binding homolog 7| Length = 1242 Score = 34.7 bits (78), Expect = 0.20 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 7/133 (5%) Frame = +2 Query: 155 YQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDV 334 Y R +++++ R EE + + +E EDE R +R +S + + + Sbjct: 53 YTRSGRKINHNRYYEEEYHEAISSE---EDE----RRYRTRRSSNSMTYRQQVMQAIDES 105 Query: 335 KSNEKVQPQRRK-LFRIPPEAVQVLRKSFAESELPTREV------KENLSTELGISFEKI 493 K N+KV P +RK ++ E + E+ +P R + ++ ELG+S E+ Sbjct: 106 KRNQKVPPAKRKRIYLSDEEEEDFAEAAHVENTVPERATRRSTRRRSSMHEELGVS-EQE 164 Query: 494 DKWFKNTRCAALR 532 + + TR AA R Sbjct: 165 ESPVRRTRKAAKR 177
>MAK5_NEUCR (Q7RZH4) ATP-dependent RNA helicase mak-5 (EC 3.6.1.-)| Length = 805 Score = 34.7 bits (78), Expect = 0.20 Identities = 24/100 (24%), Positives = 40/100 (40%) Frame = +2 Query: 71 FTDAEGFYHTNSNLGIDSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDED 250 F DAEGF+ G+D D PK E + + EE FG D E + Sbjct: 49 FDDAEGFFGLEEITGVDIVKDGDVVKFMAAVPKSEAEVEDDGEE-FGGFDDEETPKPAGN 107 Query: 251 WGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRK 370 K + + ++A K + D + ++ Q Q+++ Sbjct: 108 ADQEVKTSETKAEAASTPAKEKKASKDQRKPKEQQKQQKQ 147
>SIX1_MOUSE (Q62231) Homeobox protein SIX1 (Sine oculis homeobox homolog 1)| Length = 284 Score = 34.7 bits (78), Expect = 0.20 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 VLR+ +A + P+ K L+ G++ ++ WFKN R RDR AE Sbjct: 138 VLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR---QRDRAAE 183
>SIX1_HUMAN (Q15475) Homeobox protein SIX1 (Sine oculis homeobox homolog 1)| Length = 284 Score = 34.7 bits (78), Expect = 0.20 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 VLR+ +A + P+ K L+ G++ ++ WFKN R RDR AE Sbjct: 138 VLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR---QRDRAAE 183
>HME2B_BRARE (P31533) Homeobox protein engrailed-2b (Zf-En-1) (Eng3)| Length = 261 Score = 34.7 bits (78), Expect = 0.20 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = +2 Query: 335 KSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNT 514 K + +R E +Q L+ F + T + ++ L+ ELG++ +I WF+N Sbjct: 164 KKKTPTKEDKRPRTAFTAEQLQRLKNEFQNNRYLTEQRRQALAQELGLNESQIKIWFQNK 223 Query: 515 RCAALRDRKAEGN 553 R + +KA GN Sbjct: 224 RA---KIKKATGN 233
>SIX2_HUMAN (Q9NPC8) Homeobox protein SIX2 (Sine oculis homeobox homolog 2)| Length = 291 Score = 34.7 bits (78), Expect = 0.20 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 VLR+ +A + P+ K L+ G++ ++ WFKN R RDR AE Sbjct: 138 VLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR---QRDRAAE 183
>PROP1_PIG (Q9GLL9) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 226 Score = 34.3 bits (77), Expect = 0.26 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 +RR P ++ L +F ++ P +E L+ + G+S +I WF+N R + R Sbjct: 69 RRRHRTTFSPAQLEQLESAFGRNQYPDIWAREGLARDTGLSEARIQVWFQNRRA---KQR 125 Query: 539 KAE 547 K E Sbjct: 126 KQE 128
>POUC_BRARE (P31367) POU domain protein C (POU[C]) (ZFPOU[C])| Length = 610 Score = 34.3 bits (77), Expect = 0.26 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +R++ P+A++VL F ++ LPT + ++ EL E + WF N R Sbjct: 543 KRKRRTSFTPQAIEVLNTYFEKNSLPTGQEITEIAKELNYDREVVRVWFCNRR 595
>PITX2_MOUSE (P97474) Pituitary homeobox 2 (Orthodenticle-like homeobox 2)| (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30) Length = 317 Score = 34.3 bits (77), Expect = 0.26 Identities = 25/115 (21%), Positives = 44/115 (38%) Frame = +2 Query: 221 DNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQ 400 D +Q ++ED G + KK+R QRR+ + +Q Sbjct: 64 DKGQQGKNEDVGAEDPSKKKR-------------------------QRRQRTHFTSQQLQ 98 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNSPCC 565 L +F + P +E ++ ++ ++ WFKN R A R R+ + C Sbjct: 99 ELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRR-AKWRKRERNQQAELC 152
>HME30_APIME (P09076) Homeobox protein E30 (Fragment)| Length = 109 Score = 34.3 bits (77), Expect = 0.26 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 ++R E + L++ FAE+ T ++ LS +LG++ +I WF+N R + + Sbjct: 20 EKRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRA---KIK 76 Query: 539 KAEG 550 KA G Sbjct: 77 KASG 80
>PITX2_XENLA (Q9PWR3) Pituitary homeobox 2 (xPtx2)| Length = 326 Score = 34.3 bits (77), Expect = 0.26 Identities = 25/115 (21%), Positives = 44/115 (38%) Frame = +2 Query: 221 DNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQ 400 D Q+++ED T + KK+R QRR+ + +Q Sbjct: 73 DKSHQTKNEDSSTDDPSKKKR-------------------------QRRQRTHFTSQQLQ 107 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNSPCC 565 L +F + P +E ++ ++ ++ WFKN R A R R+ + C Sbjct: 108 ELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRR-AKWRKRERNQQAELC 161
>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)| Length = 367 Score = 34.3 bits (77), Expect = 0.26 Identities = 20/81 (24%), Positives = 36/81 (44%) Frame = +2 Query: 275 KRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKE 454 KR V++ G G+ + +P +R + +QV++ FA+ P + + Sbjct: 219 KREVEN-GNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQ 277 Query: 455 NLSTELGISFEKIDKWFKNTR 517 L+ G+S I WF+N R Sbjct: 278 KLAERTGLSRRVIQVWFQNCR 298
>HME1A_BRARE (Q04896) Homeobox protein engrailed-1a (Eng1)| Length = 231 Score = 34.3 bits (77), Expect = 0.26 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = +2 Query: 335 KSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNT 514 K+N +R E +Q L+ F S T + ++ L+ ELG++ +I WF+N Sbjct: 135 KNNNTESDDKRPRTAFTAEQLQRLKAEFQTSRYITEQRRQALARELGLNESQIKIWFQNK 194 Query: 515 R 517 R Sbjct: 195 R 195
>ZFH2_DROME (P28167) Zinc finger protein 2 (Zinc finger homeodomain protein 2)| Length = 3005 Score = 34.3 bits (77), Expect = 0.26 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 3/140 (2%) Frame = +2 Query: 128 DDDAAEMLTYQRPK--KEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKR-KKRRVDSAG 298 DD+ + T + K KE + N E F T E S+ + K +K + Sbjct: 2682 DDENKYLCTRSKQKDDKEKSHYLHNLEDFLDATMIENNSQTLTFNDDEKACQKDELTQNS 2741 Query: 299 VGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGI 478 ++ S V + K + R I PE + L + + P+R++ E +S ++ + Sbjct: 2742 NAIEKRSSVSPVNVSSKQNKRLRTT--ILPEQLNFLYECYQSESNPSRKMLEEISKKVNL 2799 Query: 479 SFEKIDKWFKNTRCAALRDR 538 + WF+N+R + R Sbjct: 2800 KKRVVQVWFQNSRAKDKKSR 2819 Score = 34.3 bits (77), Expect = 0.26 Identities = 18/78 (23%), Positives = 38/78 (48%) Frame = +2 Query: 326 SDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWF 505 ++ S + Q+R RI + +++LR F + P+ E +S + + + + WF Sbjct: 1786 ANANSQQLASNQKRARTRITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMKVVKHWF 1845 Query: 506 KNTRCAALRDRKAEGNSP 559 +NT ++R+ +SP Sbjct: 1846 RNT---LFKERQRNKDSP 1860
>PITX2_RAT (Q9R0W1) Pituitary homeobox 2 (rPtx2)| Length = 324 Score = 34.3 bits (77), Expect = 0.26 Identities = 25/115 (21%), Positives = 44/115 (38%) Frame = +2 Query: 221 DNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQ 400 D +Q ++ED G + KK+R QRR+ + +Q Sbjct: 71 DKGQQGKNEDVGAEDPSKKKR-------------------------QRRQRTHFTSQQLQ 105 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNSPCC 565 L +F + P +E ++ ++ ++ WFKN R A R R+ + C Sbjct: 106 ELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRR-AKWRKRERNQQAELC 159
>TGIF_MOUSE (P70284) 5'-TG-3'-interacting factor (Homeobox protein TGIF)| Length = 272 Score = 34.3 bits (77), Expect = 0.26 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = +2 Query: 338 SNEKVQPQRRKLFRIPPEAVQVLRKSFAE---SELPTREVKENLSTELGISFEKIDKWFK 508 S+ +RR+ +P E+VQ+LR E + P+ + K LS + +S ++ WF Sbjct: 28 SSSAASGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFI 87 Query: 509 NTRCAALRDR-KAEGNSP 559 N R L D + +G P Sbjct: 88 NARRRLLPDMLRKDGKDP 105
>KNAT4_ARATH (P48001) Homeobox protein knotted-1-like 4 (KNAT4)| Length = 393 Score = 33.9 bits (76), Expect = 0.34 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLR---KSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 ++R+ ++P + VL+ +S ++ PT E K L E G+ ++I+ WF N R Sbjct: 308 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 363
>HM16_CAEEL (P34326) Homeobox protein engrailed-like ceh-16| Length = 187 Score = 33.9 bits (76), Expect = 0.34 Identities = 26/115 (22%), Positives = 46/115 (40%) Frame = +2 Query: 218 TDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAV 397 T N S W S + R SAG + + S+ + ++R + + Sbjct: 42 TPNIASSMYPAWVFSTRYSDR--PSAGPRHRKSRKRESTGSSGSSEEEKRPRTAFTGDQL 99 Query: 398 QVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNSPC 562 L+ F ES T + ++ L+ ELG++ +I WF+N R + + C Sbjct: 100 DRLKTEFRESRYLTEKRRQELAHELGLNESQIKIWFQNKRAKLKKSTSSVPRDRC 154
>HD11_ENCCU (Q8SWA6) Homeobox protein HD-11 (EcHD-11)| Length = 167 Score = 33.9 bits (76), Expect = 0.34 Identities = 25/98 (25%), Positives = 43/98 (43%) Frame = +2 Query: 257 TSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELP 436 TS + K R A +G+ GF + Q ++ +L VL + F S P Sbjct: 31 TSERTKNLRELEAALGLLKLSGFQMNRYCTGKQMRKTRL------QTCVLNRIFEISRFP 84 Query: 437 TREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEG 550 + + +L+ + + + I KWF+NTR A + +G Sbjct: 85 SSKTIVDLALLINVHPKSIQKWFQNTRQAIRKKGSTKG 122
>OTX_STRPU (Q26417) Homeobox protein OTX (SPOTX)| Length = 371 Score = 33.9 bits (76), Expect = 0.34 Identities = 15/67 (22%), Positives = 32/67 (47%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 QRR+ + VL F+ + P ++E ++ ++ + ++ WFKN R + + Sbjct: 131 QRRERTTFTRAQLDVLETLFSRTRYPDIFMREEVAMKINLPESRVQVWFKNRRAKCRQQQ 190 Query: 539 KAEGNSP 559 + + N P Sbjct: 191 QQQQNGP 197
>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed| Length = 596 Score = 33.9 bits (76), Expect = 0.34 Identities = 18/53 (33%), Positives = 31/53 (58%) Frame = +2 Query: 395 VQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGN 553 +Q L+ F E+ T + ++ LS ELG++ +I WF+N R A ++ +E N Sbjct: 510 LQRLKNEFNENRYLTEKRRQTLSAELGLNEAQIKIWFQNKR-AKIKKSSSEKN 561
>HD4_ENCCU (Q8STR8) Homeobox protein HD-4 (EcHD-4)| Length = 132 Score = 33.9 bits (76), Expect = 0.34 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Frame = +2 Query: 395 VQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRC---AALRDRKAEGNSP 559 V VL K F ++ P+ + ++NL+ L +S I WF+N+R A + + ++ N P Sbjct: 41 VYVLTKIFEITQYPSHDTRQNLAILLNMSPRTIQIWFQNSRSVSRGAAKKKVSKDNGP 98
>LET12_LYCES (O22300) Homeobox protein knotted-1-like LET12| Length = 426 Score = 33.9 bits (76), Expect = 0.34 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLR---KSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 ++R+ ++P + VL+ +S ++ PT E K L E G+ ++I+ WF N R Sbjct: 349 RKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 404
>KNAT3_ARATH (P48000) Homeobox protein knotted-1-like 3 (KNAT3)| Length = 431 Score = 33.9 bits (76), Expect = 0.34 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLR---KSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 ++R+ ++P + VL+ +S ++ PT E K L E G+ ++I+ WF N R Sbjct: 344 RKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 399
>KNAP3_MALDO (O04136) Homeobox protein knotted-1-like 3 (KNAP3)| Length = 427 Score = 33.9 bits (76), Expect = 0.34 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLR---KSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 ++R+ ++P + VL+ +S ++ PT E K L E G+ ++I+ WF N R Sbjct: 352 RKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 407
>PROP1_MOUSE (P97458) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 223 Score = 33.9 bits (76), Expect = 0.34 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 +RR P ++ L +F ++ P +E L+ + G+S +I WF+N R + R Sbjct: 66 RRRHRTTFNPAQLEQLESAFGRNQYPDIWAREGLAQDTGLSEARIQVWFQNRRA---KQR 122 Query: 539 KAE 547 K E Sbjct: 123 KQE 125
>MEC3_CAEVU (P34765) Mechanosensory protein 3| Length = 320 Score = 33.9 bits (76), Expect = 0.34 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = +2 Query: 275 KRRVDSAGVGVKSAEGFSDVKSNEKVQPQRR-KLFRIPPEAVQVLRKSFAESELPTREVK 451 K+ VD+ G + FSD ++ +RR I + VL + F+ + P++ + Sbjct: 188 KKEVDAYGYNFEHYS-FSDFCDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHAR 246 Query: 452 ENLSTELGISFEKIDKWFKNTR 517 + E G+S I WF+N R Sbjct: 247 AKKALETGLSMRVIQVWFQNRR 268
>KNAT5_ARATH (P48002) Homeobox protein knotted-1-like 5 (KNAT5)| (Homeodomain-containing protein 1) Length = 383 Score = 33.5 bits (75), Expect = 0.45 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Frame = +2 Query: 317 EGFSD--VKSNEKVQPQRRKLFRIPPEAVQVLR---KSFAESELPTREVKENLSTELGIS 481 +GF + V E++ ++R+ ++P + VL+ ++ ++ PT E K L E G+ Sbjct: 288 QGFKEKIVDIREEIM-RKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQ 346 Query: 482 FEKIDKWFKNTR 517 ++I+ WF N R Sbjct: 347 LKQINNWFINQR 358
>VSX1_BRARE (O42250) Visual system homeobox 1 (Transcription factor VSX1)| Length = 344 Score = 33.5 bits (75), Expect = 0.45 Identities = 25/108 (23%), Positives = 43/108 (39%) Frame = +2 Query: 233 QSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRK 412 QS E N ++R V S + N + + +RR ++ L K Sbjct: 109 QSRTESHFMQNLEQQRDVYSDDDCLSGDRNDGKNSGNSQKRKKRRHRTVFTSHQLEELEK 168 Query: 413 SFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 +F E+ P +E L+ + + ++I WF+N R + K G S Sbjct: 169 AFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS 216
>RDRP_RDVA (Q02119) RNA-directed RNA polymerase (EC 2.7.7.48) (Replicase)| Length = 1444 Score = 33.5 bits (75), Expect = 0.45 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +2 Query: 119 DSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSE-DEDWGTSNKRKKRRVDSA 295 D DD+A E + + +++ RLN + + D ++ + DE +RKKR S Sbjct: 120 DISDDEAHESMLPEFRLQDIHEFRLNLKRVAVVPDESEEIQMDESQSDKRRRKKRMEKSR 179 Query: 296 GVGVKSAEGFSDVKSNEKVQPQRR 367 V + +E ++ N+ ++P ++ Sbjct: 180 PVWLSGSENDRRIELNDSLKPSQK 203
>HME2B_XENLA (P52730) Homeobox protein engrailed-2-B (En-2B) (EN2 MABEN)| Length = 265 Score = 33.5 bits (75), Expect = 0.45 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = +2 Query: 335 KSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNT 514 KS K + R F E +Q L+ F + T + +++L+ ELG++ +I WF+N Sbjct: 170 KSVSKEDKRPRTAFTA--EQLQRLKAEFQTNRYLTEQRRQSLAQELGLNESQIKIWFQNK 227 Query: 515 RCAALRDRKAEGN 553 R + +K+ GN Sbjct: 228 RA---KIKKSTGN 237
>PAL1_CAEEL (P34766) Homeobox protein pal-1 (Homeobox protein ceh-3) (Posterior| alae in males protein 1) Length = 208 Score = 33.5 bits (75), Expect = 0.45 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Frame = +2 Query: 260 SNKRKKRRVDSAGVGVKSAEGFSDVK--SNEKVQPQRRKLFRIPPEAVQVLRKSFAESEL 433 +N K RR S G + + G ++V+ + +K + R+ L K F S Sbjct: 115 NNHGKDRRSSSDGKTLPTGPGTNNVRVRTADKYRMVYSDYQRLE------LEKEFHTSPF 168 Query: 434 PTREVKENLSTELGISFEKIDKWFKNTRCAALRDRK 541 T + K LST L ++ +I WF+N R RD++ Sbjct: 169 ITSDRKSQLSTMLSLTERQIKIWFQNRRAKDRRDKQ 204
>HAT1_ARATH (P46600) Homeobox-leucine zipper protein HAT1 (HD-ZIP protein 1)| Length = 282 Score = 33.5 bits (75), Expect = 0.45 Identities = 20/69 (28%), Positives = 37/69 (53%) Frame = +2 Query: 311 SAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEK 490 S+ G SD + + + R+KL R+ + VL +F E + K L+ +LG++ + Sbjct: 117 SSRGTSDEEEDYGGETCRKKL-RLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQ 175 Query: 491 IDKWFKNTR 517 ++ WF+N R Sbjct: 176 VEVWFQNRR 184
>LOX10_HELTR (P42584) Homeobox protein LOX10 (Fragment)| Length = 184 Score = 33.1 bits (74), Expect = 0.58 Identities = 15/67 (22%), Positives = 34/67 (50%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDR 538 +R++ + L + F + + + +E+L+T +G++ ++ WF+N R + + Sbjct: 76 RRKRRILFSQAQIYELERRFRQQKYLSAPEREHLATFIGLTPTQVKIWFQNHRYKTKKSK 135 Query: 539 KAEGNSP 559 K NSP Sbjct: 136 KESKNSP 142
>AKR_CHICK (Q90655) Homeobox protein AKR (Avian knotted-related protein)| Length = 269 Score = 33.1 bits (74), Expect = 0.58 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAE---SELPTREVKENLSTELGISFEKIDKWFKNTRCAAL 529 +RR+ +P E+VQ+LR E + P+ + K LS + +S ++ WF N R L Sbjct: 35 KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKVLLSRQTHLSTLQVCNWFINARRRLL 94 Query: 530 RDR-KAEGNSP 559 D + +G P Sbjct: 95 PDMLRKDGKDP 105
>HMEN_BOMMO (P27609) Segmentation polarity homeobox protein engrailed| Length = 372 Score = 33.1 bits (74), Expect = 0.58 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEG 550 L+ FAE+ T +++L+ ELG++ +I WF+N R + +KA G Sbjct: 295 LKHEFAENRYLTERRRQSLAAELGLAEAQIKIWFQNKRA---KIKKASG 340
>HME2A_BRARE (P09015) Homeobox protein engrailed-2a (Zf-En-2) (Eng2)| Length = 265 Score = 33.1 bits (74), Expect = 0.58 Identities = 24/91 (26%), Positives = 42/91 (46%) Frame = +2 Query: 278 RRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKEN 457 R D G +S + S E +P+ E +Q L+ F + T + +++ Sbjct: 153 RYSDRPSSGPRSRKPKKKAASKEDKRPRTA----FTAEQLQRLKAEFQTNRYLTEQRRQS 208 Query: 458 LSTELGISFEKIDKWFKNTRCAALRDRKAEG 550 L+ ELG++ +I WF+N R + +KA G Sbjct: 209 LAQELGLNESQIKIWFQNKRA---KIKKASG 236
>SO_DROME (Q27350) Protein sine oculis| Length = 416 Score = 33.1 bits (74), Expect = 0.58 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +2 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAE 547 VLR ++ + P+ K +L+ G++ ++ WFKN R RDR AE Sbjct: 232 VLRDWYSHNPYPSPREKRDLAEATGLTTTQVSNWFKNRR---QRDRAAE 277
>PO2F1_CHICK (P15143) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) Length = 739 Score = 33.1 bits (74), Expect = 0.58 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 E V +R+K I L KSF E++ PT E ++ +L + E I WF N R Sbjct: 370 EGVNRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRR 427
>HD1_ENCCU (Q8SUB7) Homeobox protein HD-1 (EcHD-1)| Length = 157 Score = 33.1 bits (74), Expect = 0.58 Identities = 19/78 (24%), Positives = 33/78 (42%) Frame = +2 Query: 284 VDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLS 463 VD G + + NE ++ +R P + L +SF + P+ K L+ Sbjct: 73 VDHIGFSISEFRTLYNPNGNESIKSRR-----FPKFITEALERSFEIDQYPSEAEKARLA 127 Query: 464 TELGISFEKIDKWFKNTR 517 +S ++I+ WF N R Sbjct: 128 KICKLSTKQINNWFTNKR 145
>HNF6_RAT (P70512) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 33.1 bits (74), Expect = 0.58 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = +2 Query: 398 QVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 + L F E++ P++E++ +S +LG+ + +F N R +L + EG+S Sbjct: 398 RTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWQDEGSS 450
>HNF6_HUMAN (Q9UBC0) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 33.1 bits (74), Expect = 0.58 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = +2 Query: 398 QVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 + L F E++ P++E++ +S +LG+ + +F N R +L + EG+S Sbjct: 398 RTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWQDEGSS 450
>HMEN_ARTSF (Q05640) Homeobox protein engrailed| Length = 349 Score = 32.7 bits (73), Expect = 0.76 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = +2 Query: 332 VKSNEKVQP-QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFK 508 +K ++ + P ++R E + L+ F E+ T +++L+ ELG+ +I WF+ Sbjct: 239 MKKDKAITPDEKRPRTAFTAEQLSRLKHEFNENRYLTERRRQDLARELGLHENQIKIWFQ 298 Query: 509 NTRCAALRDRKAEGN 553 N R A L+ + N Sbjct: 299 NNR-AKLKKSSGQKN 312
>BARH1_DROME (Q24255) Homeobox protein B-H1 (Homeobox protein BarH1)| Length = 544 Score = 32.7 bits (73), Expect = 0.76 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Frame = +2 Query: 218 TDNEKQSEDEDWGTSNKRK---KRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPP 388 +D +++ED D G + D G VKS SD+ K Q + R F Sbjct: 252 SDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGST-SDMSGLSKKQRKARTAFT--D 308 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +Q L KSF + + + ++ L+ +L +S ++ W++N R Sbjct: 309 HQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRR 351
>RDRP_RDVF (Q98631) RNA-directed RNA polymerase (EC 2.7.7.48) (Replicase)| Length = 1444 Score = 32.7 bits (73), Expect = 0.76 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +2 Query: 119 DSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSE-DEDWGTSNKRKKRRVDSA 295 D DD+A E + + +++ RLN + + D ++ + DE +RKKR S Sbjct: 120 DISDDEAHESMLPEFRLQDIHEFRLNLKRVRVVPDESEEIQMDESQSDKRRRKKRMEKSR 179 Query: 296 GVGVKSAEGFSDVKSNEKVQPQRR 367 V + +E ++ N+ ++P ++ Sbjct: 180 PVWLSGSESDRRIELNDSLKPSQK 203
>HM43_CAEEL (Q18273) Homeobox protein ceh-43| Length = 273 Score = 32.7 bits (73), Expect = 0.76 Identities = 23/83 (27%), Positives = 41/83 (49%) Frame = +2 Query: 308 KSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFE 487 K EG + K N K + R+ +Q+L+K F +++ + L+ ELG+S Sbjct: 86 KIVEG-CEAKYNVKGKKMRKPRTIYNSSQLQMLQKKFQKTQYLALPDRAALAHELGLSQT 144 Query: 488 KIDKWFKNTRCAALRDRKAEGNS 556 ++ WF+N R + +K +G S Sbjct: 145 QVKIWFQNRRS---KQKKQKGGS 164
>ZHX3_RAT (Q80Z36) Zinc finger and homeobox protein 3 (Fragment)| Length = 522 Score = 32.7 bits (73), Expect = 0.76 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +2 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR--CAALRDRKA 544 E + L+ SF ++ P + E+L+ G+S ++ KWF + R C L+ +A Sbjct: 384 EQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGTRA 437
>PHX2B_MOUSE (O35690) Paired mesoderm homeobox protein 2B (Paired-like homeobox| 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) Length = 314 Score = 32.7 bits (73), Expect = 0.76 Identities = 18/68 (26%), Positives = 34/68 (50%) Frame = +2 Query: 341 NEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRC 520 NEK + QRR ++ L + FAE+ P +E L+ ++ ++ ++ WF+N R Sbjct: 93 NEK-RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRA 151 Query: 521 AALRDRKA 544 + +A Sbjct: 152 KFRKQERA 159
>PHX2B_HUMAN (Q99453) Paired mesoderm homeobox protein 2B (Paired-like homeobox| 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) Length = 314 Score = 32.7 bits (73), Expect = 0.76 Identities = 18/68 (26%), Positives = 34/68 (50%) Frame = +2 Query: 341 NEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRC 520 NEK + QRR ++ L + FAE+ P +E L+ ++ ++ ++ WF+N R Sbjct: 93 NEK-RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRA 151 Query: 521 AALRDRKA 544 + +A Sbjct: 152 KFRKQERA 159
>LSHR_MOUSE (P30730) Lutropin-choriogonadotropic hormone receptor precursor| (LH/CG-R) (LSH-R) (Luteinizing hormone receptor) Length = 700 Score = 32.7 bits (73), Expect = 0.76 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Frame = -2 Query: 540 FRSLRAAHLVFLNHLSIFSNEIPNSVERFSFTSRVGSSLSAKDL---RST*TASGGILKS 370 F SL A L + +H F N +P + FSF+ S + + T I + Sbjct: 269 FTSLLVATLTYPSHCCAFRN-LPKKEQNFSFSIFENFSKQCESTVREANNETLYSAIFEE 327 Query: 369 FLLCGWTFSFDFTSEKPSADLTPTP 295 L GW + +DF S K + TP P Sbjct: 328 NELSGWDYDYDFCSPK-TLQCTPEP 351
>KNOX1_MAIZE (P56659) Homeobox protein knotted-1-like 1 (Fragment)| Length = 88 Score = 32.3 bits (72), Expect = 0.99 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESE---LPTREVKENLSTELGISFEKIDKWFKNTR 517 ++R+ ++P + +L++ + E PT + K L E G+ ++I+ WF N R Sbjct: 26 RKRRAGKLPGDTTSILKQWWQEHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQR 81
>HMEN_SCHAM (P14150) Segmentation polarity homeobox protein engrailed (G-EN)| (Fragment) Length = 93 Score = 32.3 bits (72), Expect = 0.99 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = +2 Query: 332 VKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKN 511 +K N+K + +R + E + L+ F E+ T ++ L+ ELG++ +I WF+N Sbjct: 26 LKRNKKPEEKRPRT-AFSGEQLARLKHEFTENRYLTERRRQELARELGLNEAQIKIWFQN 84 Query: 512 TR 517 R Sbjct: 85 KR 86
>HD3_ENCCU (Q8SVD3) Homeobox protein HD-3 (EcHD-3)| Length = 107 Score = 32.3 bits (72), Expect = 0.99 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Frame = +2 Query: 377 RIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKA---- 544 R+ +VL F ++ P+ +E LS LG+ + WF+N R A K Sbjct: 12 RMTAGQTRVLMSFFKDNPFPSTTAREKLSKVLGVGPRTVQIWFQNQRQKARGQAKVSDRE 71 Query: 545 EGNSPCCWSQ 574 EG C S+ Sbjct: 72 EGPRACTGSE 81
>HXC13_MOUSE (P50207) Homeobox protein Hox-C13| Length = 328 Score = 32.3 bits (72), Expect = 0.99 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +2 Query: 359 QRRKLFRIPPEAVQV--LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +R + R+P VQ+ L K +A S+ T+E + +S +S ++ WF+N R Sbjct: 256 RRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRR 310
>VSX1_MOUSE (Q91V10) Visual system homeobox 1 (Transcription factor VSX1)| (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX) Length = 363 Score = 32.3 bits (72), Expect = 0.99 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Frame = +2 Query: 290 SAGVGVKSAEGFSDVKSNEKV------QPQRRKLFRIPPEAVQVLRKSFAESELPTREVK 451 S V + S+ K++ K+ + +RR ++ L K+F E+ P + Sbjct: 142 SESVSTSDGDSPSEEKNDPKMSLILGKRKKRRHRTVFTAHQLEELEKAFGEAHYPDVYAR 201 Query: 452 ENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 E L+ + + ++I WF+N R + K G S Sbjct: 202 EMLAAKTELPEDRIQVWFQNRRAKWRKREKRWGGS 236
>HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2)| Length = 288 Score = 32.3 bits (72), Expect = 0.99 Identities = 17/55 (30%), Positives = 32/55 (58%) Frame = +2 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGN 553 E +Q L+ F + T + +++L+ ELG++ +I WF+N R + +KA G+ Sbjct: 209 EQLQRLKAEFQTNRYLTEQRRQSLAQELGLNESQIKIWFQNKRA---KIKKATGS 260
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 32.3 bits (72), Expect = 0.99 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 19/155 (12%) Frame = +2 Query: 110 LGIDSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVD 289 LG+ G +E+L+ +P + K + +L ++ + + N+R++ Sbjct: 1645 LGLSQGS--VSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKR 1702 Query: 290 SAGVGVKSAEGFSDVKSNEK-------------------VQPQRRKLFRIPPEAVQVLRK 412 G + SD SN+ P +++ E + LR Sbjct: 1703 RRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRL 1762 Query: 413 SFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +FA P E L+ ELG++ I WF N R Sbjct: 1763 AFALDPYPNVGTIEFLANELGLATRTITNWFHNHR 1797
>VSX1_CARAU (Q90277) Visual system homeobox 1 (Transcription factor VSX1)| (Homeobox protein VSX-1) Length = 341 Score = 32.3 bits (72), Expect = 0.99 Identities = 19/77 (24%), Positives = 38/77 (49%) Frame = +2 Query: 326 SDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWF 505 +D K+++K + +R + ++ L K+F E+ P +E L+ + + ++I WF Sbjct: 138 NDGKNSQKRKKRRHRTV-FTSHQLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQVWF 196 Query: 506 KNTRCAALRDRKAEGNS 556 +N R + K G S Sbjct: 197 QNRRAKWRKREKCWGRS 213
>PO6F1_RAT (P56223) POU domain, class 6, transcription factor 1| (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein) Length = 301 Score = 32.3 bits (72), Expect = 0.99 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +R++ P+A++ L F ++ LPT + ++ EL E + WF N R Sbjct: 234 KRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRR 286
>PO6F1_MOUSE (Q07916) POU domain, class 6, transcription factor 1| (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1) Length = 301 Score = 32.3 bits (72), Expect = 0.99 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +R++ P+A++ L F ++ LPT + ++ EL E + WF N R Sbjct: 234 KRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRR 286
>PO6F1_HUMAN (Q14863) POU domain, class 6, transcription factor 1 (mPOU homeobox| protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein) Length = 301 Score = 32.3 bits (72), Expect = 0.99 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +R++ P+A++ L F ++ LPT + ++ EL E + WF N R Sbjct: 234 KRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRR 286
>ATHB7_ARATH (P46897) Homeobox-leucine zipper protein ATHB-7 (Homeodomain| transcription factor ATHB-7) (HD-ZIP protein ATHB-7) Length = 258 Score = 32.3 bits (72), Expect = 0.99 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +2 Query: 311 SAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSF-AESELPTREVKENLSTELGISFE 487 SAE F +K +K + R E ++ L F +E+ L R+ K L+ ELG+ Sbjct: 13 SAEPFLTMKKMKKSNHNKNNQRRFSDEQIKSLEMMFESETRLEPRK-KVQLARELGLQPR 71 Query: 488 KIDKWFKNTR 517 ++ WF+N R Sbjct: 72 QVAIWFQNKR 81
>HAT5_ARATH (Q02283) Homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5)| (HD-ZIP protein ATHB-1) Length = 272 Score = 32.3 bits (72), Expect = 0.99 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +2 Query: 356 PQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 P++++ R+ E V +L KSF E K L+ +LG+ ++ WF+N R Sbjct: 66 PEKKR--RLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRR 117
>HXC13_HUMAN (P31276) Homeobox protein Hox-C13 (Hox-3G)| Length = 330 Score = 32.3 bits (72), Expect = 0.99 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +2 Query: 359 QRRKLFRIPPEAVQV--LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +R + R+P VQ+ L K +A S+ T+E + +S +S ++ WF+N R Sbjct: 258 RRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRR 312
>CUP9_YEAST (P41817) Homeobox protein CUP9| Length = 306 Score = 32.3 bits (72), Expect = 0.99 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRK---SFAESELPTREVKENLSTELGISFEKI 493 F + KS K RR +P E VQ+L + + PT++ K L + G++ ++ Sbjct: 152 FVESKSRRKQNSGRRS--NLPKETVQILNTWLLNHLNNPYPTQQEKRELLIKTGLTKIQL 209 Query: 494 DKWFKNTR 517 WF N R Sbjct: 210 SNWFINVR 217
>PSIP1_FELCA (Q66T72) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) (Transcription coactivator p75) (LEDGF/p75) Length = 530 Score = 32.0 bits (71), Expect = 1.3 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Frame = +2 Query: 167 KKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNE 346 KKEV+ KR N G + ++ + E +D + KRK G ++A + +K Sbjct: 254 KKEVESKRKNSAKTGVTSTSDSEEEGDDQESEKKRK------GGRNFQTAHRRNMLKGQH 307 Query: 347 KVQPQRRKLFRIPPEAVQVLRKSFAESELP-TREVKENLSTELGISFEKIDKWFKNT 514 + + RK R E ++ +++ E + P ++V++ T + ++I KN+ Sbjct: 308 EKEAADRK--RKQEEQMETEQQNKDEGKKPEVKKVEKKRETSMDSRLQRIHAEIKNS 362
>PO2F1_XENLA (P16143) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) (XOct1) Length = 760 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 E + +R+K I L KSF E++ PT E ++ +L + E I WF N R Sbjct: 392 EGLNRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRR 449
>HM10_CAEEL (P41935) Homeobox protein ceh-10| Length = 344 Score = 32.0 bits (71), Expect = 1.3 Identities = 22/90 (24%), Positives = 42/90 (46%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLST 466 +S+G G G K++++ + + R +F + L K+F +S P +E L+ Sbjct: 118 NSSGGGSSGGGG----KASKRKKRRHRTIFT--QYQIDELEKAFQDSHYPDIYAREVLAG 171 Query: 467 ELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 + + ++I WF+N R + K G S Sbjct: 172 KTELQEDRIQVWFQNRRAKWRKTEKTWGKS 201
>PO2F1_PIG (Q29076) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) Length = 745 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 E + +R+K I L KSF E++ PT E ++ +L + E I WF N R Sbjct: 376 EGLNRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRR 433
>PO2F1_HUMAN (P14859) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) Length = 743 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 E + +R+K I L KSF E++ PT E ++ +L + E I WF N R Sbjct: 374 EGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRR 431
>VIT_ANTGR (Q05808) Vitellogenin precursor [Contains: YP47; YP160]| Length = 1790 Score = 32.0 bits (71), Expect = 1.3 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Frame = +2 Query: 152 TYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSD 331 TY +PK + +LNE + + + +E+ SE E +++R +R +S + S Sbjct: 325 TYGQPKNNQVHSKLNENLM-EDSSSEESSEQE---MTHRRFRRSANSLTKQWRE----SS 376 Query: 332 VKSNEKVQPQRRKLFRIP-----PEAVQVLRKSFAES-ELPTREVKENLSTELGISFEKI 493 + N++ Q R +L R P P V KS E+ + R+ ENL TE+ ++ Sbjct: 377 EEWNQQQQQPRPQLTRAPHSPLLPSMVGYHGKSIKENKDFDIRQNVENLVTEISDEIKQS 436 Query: 494 DK 499 +K Sbjct: 437 EK 438
>HXA11_CHICK (P31258) Homeobox protein Hox-A11 (Ghox-1I) (Chox-1.9)| Length = 297 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Frame = +2 Query: 269 RKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQV--LRKSFAESELPTR 442 +++RR +G +S+ G ++ KS QR + R P Q+ L + F S + Sbjct: 194 KERRRRPESGSSPESSSGNNEEKSGSS-SGQRTRKKRCPYTKYQIRELEREFFFSVYINK 252 Query: 443 EVKENLSTELGISFEKIDKWFKNTR 517 E + LS L ++ ++ WF+N R Sbjct: 253 EKRLQLSRMLNLTDRQVKIWFQNRR 277
>CHX10_CHICK (Q9IAL1) Homeobox protein Chx10 (Ceh-10 homeodomain-containing| homolog) Length = 377 Score = 32.0 bits (71), Expect = 1.3 Identities = 25/116 (21%), Positives = 50/116 (43%) Frame = +2 Query: 209 GKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPP 388 G+L ++ S D + +S+ RK + S + ++K + +R + Sbjct: 132 GQLDSSQTASSDSEDVSSSDRKMSK--------------SSLNQSKKRKKRRHRTI-FTS 176 Query: 389 EAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 ++ L K+F E+ P +E L+ + + ++I WF+N R + K G S Sbjct: 177 YQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS 232
>NKX26_MOUSE (P43688) Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F)| Length = 289 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/82 (23%), Positives = 37/82 (45%) Frame = +2 Query: 296 GVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELG 475 GVG S + + + +PQR+ V L + F + T +E+L++ L Sbjct: 102 GVGNLSGDMRRGGPVSTRTRPQRKSRVLFSQAQVLALERRFKQQRYLTAPEREHLASALQ 161 Query: 476 ISFEKIDKWFKNTRCAALRDRK 541 ++ ++ WF+N R + R+ Sbjct: 162 LTSTQVKIWFQNRRYKSKSQRQ 183
>KNOX7_MAIZE (P56665) Homeobox protein knotted-1-like 7 (Fragment)| Length = 85 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLR---KSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 ++R+ ++P + VL+ ++ ++ PT + K L E G+ ++I+ WF N R Sbjct: 23 RKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQR 78
>KNOX6_MAIZE (P56664) Homeobox protein knotted-1-like 6 (Fragment)| Length = 85 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLR---KSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 ++R+ ++P + VL+ ++ ++ PT + K L E G+ ++I+ WF N R Sbjct: 23 RKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQR 78
>VSX2_ORYLA (Q9I9A3) Visual system homeobox 2 (Transcription factor VSX2)| Length = 393 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/114 (22%), Positives = 49/114 (42%) Frame = +2 Query: 215 LTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEA 394 L N+ S D + +S++RK + S V ++K + +R + Sbjct: 129 LDANQSVSSDSEDLSSSERKLSK--------------SSVNQSKKRKKRRHRTI-FTSYQ 173 Query: 395 VQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 ++ L K+F E+ P +E L+ + + ++I WF+N R + K G S Sbjct: 174 LEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS 227
>TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 829 Score = 31.6 bits (70), Expect = 1.7 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Frame = +2 Query: 119 DSGDDDAAEMLTYQRPKKEV----DYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRV 286 +S D+ A++L+Y R + V +++R + F K N + D KK ++ Sbjct: 663 NSDDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQGKIDA--------KKDQL 714 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLST 466 A KSA+ + V+ +EK +KL +AVQ + + + E+ + +EN Sbjct: 715 ADARREFKSAKADAKVRRDEKT----KKLVESKKKAVQRIEEQLMKLEVQATDREENKQI 770 Query: 467 ELGIS 481 LG S Sbjct: 771 ALGTS 775
>DKC1_ARATH (Q9LD90) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Nucleolar protein NAP57 homolog) (Nopp-140-associated protein of 57 kDa homolog) (AtNAP57) Length = 565 Score = 31.6 bits (70), Expect = 1.7 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Frame = +2 Query: 119 DSGDDDAAEMLTYQRPKKEVDYKRLNEEMFG---KLTDNEKQSEDEDWGTSNKRKKRRVD 289 D D A + T + KEV+ + E++ K ++++ ++E+ G+ K KK++ D Sbjct: 445 DDSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEKKEKKKKKD 504 Query: 290 SAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKE 454 K E +V S K + +++K + AV +S AE ++ K+ Sbjct: 505 ------KKEEVIEEVAS-PKSEKKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKD 552
>CHX10_MOUSE (Q61412) Homeobox protein CHX10 (Ceh-10 homeodomain-containing| homolog) Length = 361 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/90 (23%), Positives = 37/90 (41%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLST 466 DS V + + K + +RR ++ L K+F E+ P +E L+ Sbjct: 124 DSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAM 183 Query: 467 ELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 + + ++I WF+N R + K G S Sbjct: 184 KTELPEDRIQVWFQNRRAKWRKREKCWGRS 213
>CHX10_HUMAN (P58304) Homeobox protein CHX10 (Ceh-10 homeodomain-containing| homolog) Length = 361 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/90 (23%), Positives = 37/90 (41%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLST 466 DS V + + K + +RR ++ L K+F E+ P +E L+ Sbjct: 124 DSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAM 183 Query: 467 ELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 + + ++I WF+N R + K G S Sbjct: 184 KTELPEDRIQVWFQNRRAKWRKREKCWGRS 213
>HM34_CAEEL (Q94165) Homeobox protein ceh-34| Length = 256 Score = 31.6 bits (70), Expect = 1.7 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 401 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 VLR ++ + + P+ E K L+ + +S ++ WFKN R Sbjct: 148 VLRDAYKKCQYPSVEDKRRLAQQTELSIIQVSNWFKNKR 186
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 31.6 bits (70), Expect = 1.7 Identities = 22/82 (26%), Positives = 39/82 (47%) Frame = +2 Query: 287 DSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLST 466 D G +KS SD+ K Q + R F +Q L KSF + + + ++ L+ Sbjct: 310 DDDGNSIKSGST-SDMSGLSKKQRKARTAFT--DHQLQTLEKSFERQKYLSVQERQELAH 366 Query: 467 ELGISFEKIDKWFKNTRCAALR 532 +L +S ++ W++N R +R Sbjct: 367 KLDLSDCQVKTWYQNRRTKWMR 388
>PHX2A_HUMAN (O14813) Paired mesoderm homeobox protein 2A (Paired-like homeobox| 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein) Length = 284 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/74 (21%), Positives = 34/74 (45%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 F + + + QRR ++ L + FAE+ P +E L+ ++ ++ ++ W Sbjct: 78 FPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVW 137 Query: 503 FKNTRCAALRDRKA 544 F+N R + +A Sbjct: 138 FQNRRAKFRKQERA 151
>ISL2_RAT (P50480) Insulin gene enhancer protein ISL-2 (Islet-2)| Length = 360 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Frame = +2 Query: 296 GVGVKSAEGFSDVKSNEKVQPQRRKLFRIPP----EAVQVLRKSFAESELPTREVKENLS 463 G+ + A V V Q K R+ + + LR +A + P +KE L Sbjct: 167 GLHLPDAGSGQQVSLRTHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLV 226 Query: 464 TELGISFEKIDKWFKNTRCAALRDRK 541 G+S I WF+N RC +D+K Sbjct: 227 EMTGLSPRVIRVWFQNKRC---KDKK 249
>PHX2A_MOUSE (Q62066) Paired mesoderm homeobox protein 2A (Paired-like homeobox| 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog) Length = 280 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/74 (21%), Positives = 34/74 (45%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 F + + + QRR ++ L + FAE+ P +E L+ ++ ++ ++ W Sbjct: 78 FPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVW 137 Query: 503 FKNTRCAALRDRKA 544 F+N R + +A Sbjct: 138 FQNRRAKFRKQERA 151
>PHX2A_RAT (Q62782) Paired mesoderm homeobox protein 2A (Paired-like homeobox| 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein) Length = 281 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/74 (21%), Positives = 34/74 (45%) Frame = +2 Query: 323 FSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKW 502 F + + + QRR ++ L + FAE+ P +E L+ ++ ++ ++ W Sbjct: 78 FPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVW 137 Query: 503 FKNTRCAALRDRKA 544 F+N R + +A Sbjct: 138 FQNRRAKFRKQERA 151
>SPT6H_BRARE (Q8UVK2) Transcription elongation factor SPT6 (Protein pandora)| Length = 1726 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/60 (26%), Positives = 26/60 (43%) Frame = +2 Query: 122 SGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGV 301 SG DAA + + D+ + E + + E+ +DE W K+ KRRV + Sbjct: 198 SGYTDAALQEAQEIFGGDFDFAEFDTEAYDHAEEEEEDQDDESWDRPKKQTKRRVSRRSI 257
>ISL1_RAT (P61374) Insulin gene enhancer protein ISL-1 (Islet-1)| Length = 349 Score = 31.2 bits (69), Expect = 2.2 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +2 Query: 353 QPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAA 526 QP++ R + + + LR +A + P +KE L G+S I WF+N RC Sbjct: 177 QPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC-- 234 Query: 527 LRDRK 541 +D+K Sbjct: 235 -KDKK 238
>ISL1_MOUSE (P61372) Insulin gene enhancer protein ISL-1 (Islet-1)| Length = 349 Score = 31.2 bits (69), Expect = 2.2 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +2 Query: 353 QPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAA 526 QP++ R + + + LR +A + P +KE L G+S I WF+N RC Sbjct: 177 QPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC-- 234 Query: 527 LRDRK 541 +D+K Sbjct: 235 -KDKK 238
>ISL1_MESAU (P61373) Insulin gene enhancer protein ISL-1 (Islet-1)| Length = 349 Score = 31.2 bits (69), Expect = 2.2 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +2 Query: 353 QPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAA 526 QP++ R + + + LR +A + P +KE L G+S I WF+N RC Sbjct: 177 QPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC-- 234 Query: 527 LRDRK 541 +D+K Sbjct: 235 -KDKK 238
>ISL1_HUMAN (P61371) Insulin gene enhancer protein ISL-1 (Islet-1)| Length = 349 Score = 31.2 bits (69), Expect = 2.2 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +2 Query: 353 QPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAA 526 QP++ R + + + LR +A + P +KE L G+S I WF+N RC Sbjct: 177 QPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC-- 234 Query: 527 LRDRK 541 +D+K Sbjct: 235 -KDKK 238
>ISL1_CHICK (P50211) Insulin gene enhancer protein ISL-1 (Islet-1)| Length = 349 Score = 31.2 bits (69), Expect = 2.2 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +2 Query: 353 QPQRRKLFR--IPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAA 526 QP++ R + + + LR +A + P +KE L G+S I WF+N RC Sbjct: 177 QPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC-- 234 Query: 527 LRDRK 541 +D+K Sbjct: 235 -KDKK 238
>PO2F1_RAT (P31503) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) (Fragment) Length = 632 Score = 31.2 bits (69), Expect = 2.2 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 E + +R+K I L KSF E++ PT E ++ +L + E I WF N R Sbjct: 263 EGLNRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFCNRR 320
>TXND2_MOUSE (Q6P902) Thioredoxin domain-containing protein 2| (Spermatid-specific thioredoxin-1) (Sptrx-1) (Thioredoxin-4) Length = 515 Score = 31.2 bits (69), Expect = 2.2 Identities = 22/80 (27%), Positives = 38/80 (47%) Frame = +2 Query: 161 RPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKS 340 +PKKE K + + K D K SED + +K+ R S+ V+S EG Sbjct: 227 QPKKEDRPKSSEDSVPSKKGDRPKSSED----SVQPKKEDRPKSSEDSVQSKEGEVHKPL 282 Query: 341 NEKVQPQRRKLFRIPPEAVQ 400 + +Q + K+ + P +++Q Sbjct: 283 KDSIQSKETKVPKSPQDSIQ 302
>SH2P1_HUMAN (Q6PD62) SH2 domain-binding protein 1| Length = 1173 Score = 31.2 bits (69), Expect = 2.2 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = +2 Query: 212 KLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPE 391 K + +E++ EDE+ G K+K+RR K EG D ++ +P++R+ PP+ Sbjct: 939 KGSGSEQEGEDEEGGERKKKKRRR------HPKGEEGSDDDETENGPKPKKRR----PPK 988 Query: 392 A 394 A Sbjct: 989 A 989
>PO2F1_MOUSE (P25425) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) Length = 770 Score = 31.2 bits (69), Expect = 2.2 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 E + +R+K I L KSF E++ PT E ++ +L + E I WF N R Sbjct: 377 EGLNRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFCNRR 434
>FTZ_DROHY (P48590) Segmentation protein fushi tarazu| Length = 456 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNSPCC 565 L K F + TR + +++ L +S +I WF+N R + +DR E + C Sbjct: 298 LEKEFHFNRYITRRRRMDIAHALNLSERQIKIWFQNRRMKSKKDRTLEASPDHC 351
>KNOX2_MAIZE (P56660) Homeobox protein knotted-1-like 2 (Fragment)| Length = 88 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLR---KSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 ++R+ ++P + L+ ++ ++ PT E K L E G+ ++I+ WF N R Sbjct: 26 RKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 81
>HMENA_MYXGL (P31535) Homeobox protein engrailed-like A (EN-A) (Fragment)| Length = 60 Score = 31.2 bits (69), Expect = 2.2 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEG 550 LR F + T E ++NL+ EL ++ +I WF+N R + +KA G Sbjct: 7 LRAEFQANRYLTEERRQNLARELSLNEAQIKIWFQNKRA---KIKKASG 52
>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 972 Score = 30.8 bits (68), Expect = 2.9 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = +2 Query: 113 GIDSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKR 280 G+D+ DDD +L ++ KKE ++ +E K K+ +D+G +KK+ Sbjct: 348 GMDNDDDDDIPLLARKKVKKE----KIKKESKEKSKKRVKEEPSDDYGNVKPKKKK 399
>CLC1_YEAST (P17891) Clathrin light chain (CLC)| Length = 233 Score = 30.8 bits (68), Expect = 2.9 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%) Frame = +2 Query: 32 SPNDDIPGFISADFTDAEGFYHTNSNLGIDSGDDDAAEMLTY--QRPKKEVDYKRL-NEE 202 S ND+ G DF+ EG +N +S +D +E++ QR E+ K L +EE Sbjct: 89 SGNDN--GEADDDFSTFEG-----ANQSTESVKEDRSEVVDQWKQRRAVEIHEKDLKDEE 141 Query: 203 MFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGF 325 + +L D + D+ + + NK+K+++++ A K AE F Sbjct: 142 LKKELQDEAIKHIDDFYDSYNKKKEQQLEDA---AKEAEAF 179
>HM40_CAEEL (Q19503) Homeobox protein ceh-40| Length = 329 Score = 30.8 bits (68), Expect = 2.9 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Frame = +2 Query: 362 RRKLFRIPPEAVQVLRKSFAES---ELPTREVKENLSTELGISFEKIDKWFKNTR----- 517 RRK + ++L + F + P+ EVK+ L+ + IS ++ WF N R Sbjct: 188 RRKRRNFSKTSTEILNEYFLANINHPYPSEEVKQALAMQCNISVAQVSNWFGNKRIRYKK 247 Query: 518 -CAALRDRKAEGNSP 559 A D + E P Sbjct: 248 TMAKNEDERRENRKP 262
>RPA1_HUMAN (O95602) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| (RNA polymerase I 194 kDa subunit) (RPA194) Length = 1717 Score = 30.8 bits (68), Expect = 2.9 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +2 Query: 119 DSGDDDAAEMLTYQRPKKEVDYK-RLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVD-S 292 + GD DA++ ++ ++EVDY+ EE G+ D+E E+ + RK + D Sbjct: 1407 EEGDADASDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEE 1466 Query: 293 AGVG 304 G+G Sbjct: 1467 VGLG 1470
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent helicase| brm) (Protein brahma) Length = 1638 Score = 30.4 bits (67), Expect = 3.8 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 17/72 (23%) Frame = +2 Query: 128 DDDAAEMLTYQ-----------RPKKEVDYK-RLNEEMFGKLTDN-----EKQSEDEDWG 256 DDD E YQ R +KEVDY L E+ + K D+ E++ ED+ Sbjct: 1336 DDDEVERFHYQYDEDTILGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKR 1395 Query: 257 TSNKRKKRRVDS 292 KRK R+ +S Sbjct: 1396 KRRKRKNRKEES 1407
>ZA2G_RAT (Q63678) Zinc-alpha-2-glycoprotein precursor| (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) Length = 296 Score = 30.4 bits (67), Expect = 3.8 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +2 Query: 26 LYSPNDDIPGFISADFTDAEGFYHTNSNLGIDSGDDDAAEMLTYQRPKKEVDYKRLNEEM 205 L P+ +P F + F + + F+H NSN G + + + + +KE +R EE+ Sbjct: 32 LSRPSKGLPRFQATAFLNDQAFFHYNSNSGKAEPVEPWSHVEGMEDWEKESQLQRAREEI 91 Query: 206 F 208 F Sbjct: 92 F 92
>HD1_BRANA (P46606) Homeobox protein HD1| Length = 294 Score = 30.4 bits (67), Expect = 3.8 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAES---ELPTREVKENLSTELGISFEKIDKWFKNTR 517 ++R+ ++P + VL+ + + PT + K L E G+ ++I+ WF N R Sbjct: 219 RKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQR 274
>VSX1_CHICK (Q9IAL2) Visual system homeobox 1 (Transcription factor VSX1)| (Homeobox protein Chx10-1) Length = 350 Score = 30.4 bits (67), Expect = 3.8 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +2 Query: 395 VQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNS 556 ++ L K+F E+ P +E L+ + + ++I WF+N R + K G S Sbjct: 169 LEELEKAFNEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKCWGRS 222
>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22| Length = 881 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Frame = +2 Query: 110 LGIDSGDD--DAAEMLTY--QRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKK 277 +G+D D D + Y Q + E YK+L E+ G+ +D++++ EDE +S++ ++ Sbjct: 352 IGLDDEIDTQDGLNVFKYDPQWEEHEEAYKKLKAEILGEGSDDDEEDEDETDESSDEEEE 411 Query: 278 RR 283 R Sbjct: 412 ER 413
>PRRXL_RAT (Q62798) Paired-related homeobox protein-like 1 (Homeobox protein| DRG11) Length = 263 Score = 30.4 bits (67), Expect = 3.8 Identities = 13/53 (24%), Positives = 27/53 (50%) Frame = +2 Query: 359 QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 QRR + ++ L FA++ P +E L+ ++ ++ ++ WF+N R Sbjct: 33 QRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRR 85
>HMIN_DROME (P05527) Homeobox protein invected| Length = 576 Score = 30.4 bits (67), Expect = 3.8 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 L+ F E+ T + ++ LS ELG++ +I WF+N R Sbjct: 486 LKHEFNENRYLTEKRRQQLSGELGLNEAQIKIWFQNKR 523
>ISL2_MOUSE (Q9CXV0) Insulin gene enhancer protein ISL-2 (Islet-2)| Length = 359 Score = 30.4 bits (67), Expect = 3.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +2 Query: 395 VQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRK 541 + LR +A + P +KE L G+S I WF+N RC +D+K Sbjct: 203 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC---KDKK 248
>ISL2_HUMAN (Q96A47) Insulin gene enhancer protein ISL-2 (Islet-2)| Length = 359 Score = 30.4 bits (67), Expect = 3.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +2 Query: 395 VQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRK 541 + LR +A + P +KE L G+S I WF+N RC +D+K Sbjct: 203 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC---KDKK 248
>HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3| Length = 410 Score = 30.4 bits (67), Expect = 3.8 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Frame = +2 Query: 251 WGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESE 430 W +++ ++ S+ V+S+ G KS +R + + V+ L K F + Sbjct: 136 WMKESRQNAKQKTSSSSSVESSAG---EKSPPGPASKRARTAYTSAQLVE-LEKEFHFNR 191 Query: 431 LPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAE-------GNSPC 562 R + ++ L ++ +I WF+N R +D+KA+ G SPC Sbjct: 192 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGMLTSSGGQSPC 242
>FTZ_DROME (P02835) Segmentation protein fushi tarazu| Length = 410 Score = 30.4 bits (67), Expect = 3.8 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEGNSPCC 565 L K F + TR + +++ L +S +I WF+N R + +DR + + C Sbjct: 269 LEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSPEHC 322
>ISL2_CHICK (P53410) Insulin gene enhancer protein ISL-2 (Islet-2) (Fragment)| Length = 319 Score = 30.4 bits (67), Expect = 3.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +2 Query: 395 VQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRDRK 541 + LR +A + P +KE L G+S I WF+N RC +D+K Sbjct: 162 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC---KDKK 207
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 30.4 bits (67), Expect = 3.8 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 10/137 (7%) Frame = +2 Query: 71 FTDAEGFYHTNSNLGIDSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDED 250 F + +G L I D + E E YK+L E+ G+ +D E S+DE Sbjct: 365 FVELDGELDAQDGLNIFKFDPEYEE--------NEEKYKKLKAEILGEGSDYEDDSDDEG 416 Query: 251 WGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRI------PPEAVQVLRK 412 +S+ D + A D +SN + RR ++ P EAV L K Sbjct: 417 SDSSD-------DEPAAAEQKAMDIQD-RSNADLVALRRTIYLTLMSSMDPEEAVHKLMK 468 Query: 413 ----SFAESELPTREVK 451 E ELP+ V+ Sbjct: 469 INLPQGLEGELPSLVVE 485
>HXA11_HUMAN (P31270) Homeobox protein Hox-A11 (Hox-1I)| Length = 313 Score = 30.4 bits (67), Expect = 3.8 Identities = 20/84 (23%), Positives = 36/84 (42%) Frame = +2 Query: 266 KRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTRE 445 K ++RR +S+ S+ D Q R+K ++ L + F S +E Sbjct: 210 KERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKE 269 Query: 446 VKENLSTELGISFEKIDKWFKNTR 517 + LS L ++ ++ WF+N R Sbjct: 270 KRLQLSRMLNLTDRQVKIWFQNRR 293
>EVX2_HUMAN (Q03828) Homeobox even-skipped homolog protein 2 (EVX-2)| Length = 476 Score = 30.4 bits (67), Expect = 3.8 Identities = 43/200 (21%), Positives = 63/200 (31%), Gaps = 19/200 (9%) Frame = +2 Query: 2 SPIVQXSPLYSPNDDIPGFISADFTDAEGFYHTNSNLGIDSGDDDAAEMLT----YQRPK 169 SP + +PL+S ++P + HT S + S AAE Y Sbjct: 50 SPRLPSAPLHSALGELPAKGKFEIDTLFNLQHTGSESTVSSEISSAAESRKKPGHYSEAA 109 Query: 170 KEVDYKRLNEEMFGKLTD-------NEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFS 328 E D E L K++ + + S ++G G+ S G S Sbjct: 110 AEADMSSDVEVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGS 169 Query: 329 DVK--------SNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISF 484 S RR E + L K F +R + L+ L + Sbjct: 170 GGSGGSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPE 229 Query: 485 EKIDKWFKNTRCAALRDRKA 544 I WF+N R R R A Sbjct: 230 TTIKVWFQNRRMKDKRQRLA 249
>HXB3A_BRARE (O42368) Homeobox protein Hox-B3a (Hox-B3)| Length = 417 Score = 30.0 bits (66), Expect = 4.9 Identities = 22/97 (22%), Positives = 39/97 (40%) Frame = +2 Query: 260 SNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPT 439 S + K++ S +AE KS +R + L K F + Sbjct: 147 SRQNTKQKNSSPSASSANAESSGGEKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLC 206 Query: 440 REVKENLSTELGISFEKIDKWFKNTRCAALRDRKAEG 550 R + ++ L +S +I WF+N R +D+K++G Sbjct: 207 RPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKSKG 243
>SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) (ATP-dependent helicase 1) (hHEL1) Length = 1026 Score = 30.0 bits (66), Expect = 4.9 Identities = 23/83 (27%), Positives = 39/83 (46%) Frame = +2 Query: 212 KLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPE 391 KL+ + + E++++ KK R+D +SAE S+ + E + + +K F P Sbjct: 209 KLSSSSEPYEEDEFNDDQSIKKTRLDHGEESNESAESSSNWEKQESIVLKLQKEF--PNF 266 Query: 392 AVQVLRKSFAESELPTREVKENL 460 Q LR+ E E E E+L Sbjct: 267 DKQELREVLKEHEWMYTEALESL 289
>HM05_CAEEL (P20269) Homeobox protein ceh-5| Length = 148 Score = 30.0 bits (66), Expect = 4.9 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Frame = +2 Query: 299 VGVKSAEGFS---DVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTE 469 + +KSA G ++ + ++ +R E ++ L +SF S + + L+ Sbjct: 12 IRIKSANGSEKMLEIPAKLDLERPKRPRTVFTDEQLEKLEESFNTSGYLSGSTRAKLAES 71 Query: 470 LGISFEKIDKWFKNTR 517 LG+S ++ WF+N R Sbjct: 72 LGLSDNQVKVWFQNRR 87
>FWA_ARATH (Q9FVI6) Homeobox protein FWA| Length = 686 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/59 (25%), Positives = 26/59 (44%) Frame = +2 Query: 341 NEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 N++ + R+ R Q L + E+ PT E + L L + ++ WF+N R Sbjct: 34 NDQDGGRMRRTHRRTAYQTQELENFYMENPHPTEEQRYELGQRLNMGVNQVKNWFQNKR 92
>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14| Length = 827 Score = 30.0 bits (66), Expect = 4.9 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 12/102 (11%) Frame = +2 Query: 143 EMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSA-- 316 +ML KKE+ KRL+E++ L + S+ + +N++ +G+ S Sbjct: 691 DMLQLYSLKKELLSKRLSEKLLSTL---QAVSDSIESAKANRKPLALQSHRPLGITSQVP 747 Query: 317 ---EGFSDVKSNEKVQPQRRKLFRIPPE-------AVQVLRK 412 EG+S KS+ + P+R +L ++ + A++ LRK Sbjct: 748 KFEEGYSLDKSSHDIDPERAQLNKLRAQHRDAKKGAIRTLRK 789
>HD10_ENCCU (Q8SW18) Homeobox protein HD-10 (EcHD-10)| Length = 227 Score = 30.0 bits (66), Expect = 4.9 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = +2 Query: 329 DVKSNEKVQP---QRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDK 499 +V+ N+ P + RK R ++VL ++F + P +++ L +LG++ + Sbjct: 19 EVEGNQYFDPYFVKHRK--RTTKAQLKVLEETFETNIRPDANMRKKLGEQLGMTPRSVQV 76 Query: 500 WFKNTR 517 WF+N R Sbjct: 77 WFQNRR 82
>HXA11_MOUSE (P31311) Homeobox protein Hox-A11 (Hox-1.9)| Length = 313 Score = 30.0 bits (66), Expect = 4.9 Identities = 20/91 (21%), Positives = 38/91 (41%) Frame = +2 Query: 245 EDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAE 424 ++ K ++RR +S+ S+ D Q R+K ++ L + F Sbjct: 203 QEAAAEEKERRRRPESSSSPESSSGHTEDKAGGSGGQRTRKKRCPYTKYQIRELEREFFF 262 Query: 425 SELPTREVKENLSTELGISFEKIDKWFKNTR 517 S +E + LS L ++ ++ WF+N R Sbjct: 263 SVYINKEKRLQLSRMLNLTDRQVKIWFQNRR 293
>KNAT2_ARATH (P46640) Homeobox protein knotted-1-like 2 (KNAT2) (ATK1)| Length = 310 Score = 30.0 bits (66), Expect = 4.9 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 4/107 (3%) Frame = +2 Query: 209 GKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQ-PQRRKLFRIP 385 G ++ +E+ ED+D + ++ R + + + F S+ K++ +++K ++P Sbjct: 181 GAVSSDEELREDDDIAADDSQQ--RSNDRDLKDQLLRKFGSHISSLKLEFSKKKKKGKLP 238 Query: 386 PEAVQVLRKSFAESE---LPTREVKENLSTELGISFEKIDKWFKNTR 517 EA Q L + PT K +L+ E G+ ++I+ WF N R Sbjct: 239 REARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQR 285
>HMEN_HELTR (P23397) Homeobox protein Ht-En (Fragment)| Length = 98 Score = 30.0 bits (66), Expect = 4.9 Identities = 17/66 (25%), Positives = 35/66 (53%) Frame = +2 Query: 353 QPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALR 532 Q ++R + + L++ F+E++ T + + L+ EL ++ +I WF+N R + Sbjct: 1 QDEKRPRTAFTGDQLARLKREFSENKYLTEQRRTCLAKELNLNESQIKIWFQNKRA---K 57 Query: 533 DRKAEG 550 +KA G Sbjct: 58 MKKASG 63
>HM07_CAEEL (P20270) Homeobox protein ceh-7| Length = 84 Score = 30.0 bits (66), Expect = 4.9 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = +2 Query: 356 PQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTRCAALRD 535 P+RR F + E + +L FA+S+ + +E L+ L + ++ WF+N R R+ Sbjct: 24 PRRRTTFTV--EQLYLLEMYFAQSQYVGCDERERLARILSLDEYQVKIWFQNRRIRMRRE 81
>HBXAP_HUMAN (Q96T23) Hepatitis B virus X-associated protein (HBV pX-associated| protein 8) (Remodeling and spacing factor 1) (Rsf-1) (p325 subunit of RSF chromatin remodelling complex) Length = 1431 Score = 29.6 bits (65), Expect = 6.4 Identities = 24/109 (22%), Positives = 46/109 (42%) Frame = +2 Query: 119 DSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAG 298 DS D + + L + + V +RL+ + + K SED++ K KR V G Sbjct: 1210 DSESDGSQKSLRRGKEIRRVHKRRLSSSE-SEESYLSKNSEDDELA---KESKRSVRKRG 1265 Query: 299 VGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTRE 445 + + E+ +P R++L RI + + + ++ P R+ Sbjct: 1266 RSTDEYSEADEEEEEEEGKPSRKRLHRIETDEEESCDNAHGDANQPARD 1314
>SIX4_HUMAN (Q9UIU6) Homeobox protein SIX4 (Sine oculis homeobox homolog 4)| Length = 760 Score = 29.6 bits (65), Expect = 6.4 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 L++ + ++ P+ K +L+ G+S ++ WFKN R Sbjct: 217 LKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRR 254
>PSIP1_HUMAN (O75475) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) (Transcriptional coactivator p75/p52) (Dense fine speckles 70 kDa protein) (DFS 70) (CLL-associated antigen KW-7) Length = 530 Score = 29.6 bits (65), Expect = 6.4 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Frame = +2 Query: 167 KKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNE 346 KKEV+ KR N G + ++ + E +D KRK G ++A + +K Sbjct: 254 KKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRK------GGRNFQTAHRRNMLKGQH 307 Query: 347 KVQPQRRKLFRIPPEAVQVLRKSFAESELP-TREVKENLSTELGISFEKIDKWFKNT 514 + + RK R E ++ +++ E + P ++V++ T + ++I KN+ Sbjct: 308 EKEAADRK--RKQEEQMETEQQNKDEGKKPEVKKVEKKRETSMDSRLQRIHAEIKNS 362
>AGL14_ARATH (Q38838) Agamous-like MADS-box protein AGL14| Length = 221 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/95 (24%), Positives = 42/95 (44%) Frame = +2 Query: 212 KLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPE 391 K DN +QS+DE +G + K + + + + + + S + + R L +I + Sbjct: 82 KRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAK 141 Query: 392 AVQVLRKSFAESELPTREVKENLSTELGISFEKID 496 Q+LR E +E + NL E + EK + Sbjct: 142 KYQLLR----EETEKLKEKERNLIAENKMLMEKCE 172
>SIX4_MOUSE (Q61321) Homeobox protein SIX4 (Sine oculis homeobox homolog 4)| (Skeletal muscle-specific ARE binding protein AREC3) Length = 775 Score = 29.6 bits (65), Expect = 6.4 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +2 Query: 404 LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 L++ + ++ P+ K +L+ G+S ++ WFKN R Sbjct: 231 LKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRR 268
>HGV2_HALRO (Q02508) Protein HGV2| Length = 510 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = +2 Query: 119 DSGDDDAAEMLTYQRPK-KEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSA 295 D+ D E +++P E + ++L EE+ + ++ +++E KK+ D Sbjct: 100 DADGDSDQEQEQFEKPDLPETEREKLREEVEAAMATEDEDTQEERGCPRRVEKKKEDDKP 159 Query: 296 GVGVKSAEGFSDVKSNEKVQ 355 KSAE SD K E+ Q Sbjct: 160 KESEKSAEK-SDEKEKEEKQ 178
>DNL1_HUMAN (P18858) DNA ligase 1 (EC 6.5.1.1) (DNA ligase I)| (Polydeoxyribonucleotide synthase [ATP] 1) Length = 919 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/97 (23%), Positives = 45/97 (46%) Frame = +2 Query: 164 PKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSN 343 PK+ K+L + ++ E+QSEDED K+++ ++ + AE ++ + Sbjct: 119 PKRRTARKQLPKRTIQEVL--EEQSEDEDREAKRKKEEEEEETPKESLTEAEVATEKEGE 176 Query: 344 EKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKE 454 + QP PP+ ++ +++E PT V E Sbjct: 177 DGDQP------TTPPKPLKT-----SKAETPTESVSE 202
>SMOX2_SCHMA (Q26601) Homeobox protein engrailed-like SMOX-2| Length = 524 Score = 29.6 bits (65), Expect = 6.4 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +2 Query: 335 KSNEKVQPQR-RKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKN 511 +SN+++ +R R F +P ++ L + F ++ ++ L+TEL + ++ WF+N Sbjct: 416 RSNDELNLKRPRTSFTVPQ--LKRLSQEFEKNRYLDELRRKKLATELDLRESQVKIWFQN 473 Query: 512 TRCAALRDRKAEGNSPC 562 R + +KA G C Sbjct: 474 KRA---KTKKASGAQNC 487
>PSIP1_BOVIN (Q8MJG1) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) (Fragment) Length = 483 Score = 29.6 bits (65), Expect = 6.4 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Frame = +2 Query: 167 KKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNE 346 KKEV+ KR N G + ++ + E +D KRK G ++A + +K Sbjct: 207 KKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRK------GGRNFQTAHRRNMLKGQH 260 Query: 347 KVQPQRRKLFRIPPEAVQVLRKSFAESELP-TREVKENLSTELGISFEKIDKWFKNT 514 + + RK R E ++ +++ E + P ++V++ T + ++I KN+ Sbjct: 261 EKEAADRK--RKQEEQMETEQQNKDEGKKPEVKKVEKKRETSMDSRLQRIHAEIKNS 315
>PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain protein 1)| (PDM-1) (dPOU-19) (dOCT1) Length = 601 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/80 (26%), Positives = 34/80 (42%) Frame = +2 Query: 278 RRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKEN 457 R + + G A + V + E + +R+K I L K+F ++ PT E Sbjct: 496 RTIQATGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQKPTSEEITQ 555 Query: 458 LSTELGISFEKIDKWFKNTR 517 L+ L + E + WF N R Sbjct: 556 LADRLSMEKEVVRVWFCNRR 575
>IF38_HUMAN (Q99613) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 913 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Frame = +2 Query: 62 SADFTDAEGFYHTNSNLGIDSGDDDAAEMLTYQRPKKEV---DYKRLNEEMFGKLTDNEK 232 SAD DAE + + D+D T+ + K E + ++ ++M + D+E Sbjct: 166 SAD-EDAEKNEEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSED 224 Query: 233 QSEDEDWGTSN 265 +DEDW T + Sbjct: 225 SEDDEDWDTGS 235
>ATHB5_ARATH (P46667) Homeobox-leucine zipper protein ATHB-5 (HD-ZIP protein| ATHB-5) Length = 312 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +2 Query: 377 RIPPEAVQVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 R+ E V+ L K+F E K L+ ELG+ ++ WF+N R Sbjct: 75 RLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRR 121
>RL5_BACTN (Q8A488) 50S ribosomal protein L5| Length = 185 Score = 29.3 bits (64), Expect = 8.4 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 2/34 (5%) Frame = +3 Query: 228 KSRVKMKIGVLVI--RERKEEWIQLVLELSLPRV 323 K R KM IGV+V RER E+++ ++ ++LPR+ Sbjct: 81 KLRKKMPIGVMVTLRRERMYEFLEKLVRVALPRI 114
>DLX4A_BRARE (Q98879) Homeobox protein Dlx4a (DLX-8) (Distal-less homeobox| protein 4a) Length = 250 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/93 (20%), Positives = 43/93 (46%) Frame = +2 Query: 281 RVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENL 460 RV+ A +S+ +++ N K + R+ +Q L + F +++ + +L Sbjct: 97 RVEDADSEKQSSIESGEIRLNGKGKKIRKPRTIYSSLQLQALNQRFQQTQYLALPERADL 156 Query: 461 STELGISFEKIDKWFKNTRCAALRDRKAEGNSP 559 + +LG++ ++ WF+N R + K + P Sbjct: 157 AAKLGLTQTQVKIWFQNKRSKYKKIMKHGSSGP 189
>UBP1_YEAST (P25037) Ubiquitin carboxyl-terminal hydrolase 1 (EC 3.1.2.15)| (Ubiquitin thioesterase 1) (Ubiquitin-specific-processing protease 1) (Deubiquitinating enzyme 1) Length = 809 Score = 29.3 bits (64), Expect = 8.4 Identities = 25/96 (26%), Positives = 42/96 (43%) Frame = +2 Query: 68 DFTDAEGFYHTNSNLGIDSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDE 247 ++ DAEG Y ++ Y K +Y LN E+ G +D+E + +E Sbjct: 560 EYDDAEGNYASH-----------------YNHTKDISNYDPLNGEVDGVTSDDEDEYIEE 602 Query: 248 DWGTSNKRKKRRVDSAGVGVKSAEGFSDVKSNEKVQ 355 N KKR ++ + V + +VK NE++Q Sbjct: 603 TDALGNTIKKRIIEHSDVENE------NVKDNEELQ 632
>PLSL_HUMAN (P13796) Plastin-2 (L-plastin) (Lymphocyte cytosolic protein 1)| (LCP-1) (LC64P) Length = 627 Score = 29.3 bits (64), Expect = 8.4 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 10/103 (9%) Frame = +2 Query: 26 LYSP-NDDIP-GFISADFTDAEGFYHTNSNLGIDSGDD----DAAEMLT----YQRPKKE 175 L+ P N DI G + + + F + ++LG++ + D ++ L Y++ K Sbjct: 377 LHKPENQDIDWGALEGETREERTFRNWMNSLGVNPRVNHLYSDLSDALVIFQLYEKIKVP 436 Query: 176 VDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGVG 304 VD+ R+N+ + KL N K+ E+ ++ + + + G+G Sbjct: 437 VDWNRVNKPPYPKLGGNMKKLENCNYAVELGKNQAKFSLVGIG 479
>HXB3_CHICK (P23682) Homeobox protein Hox-B3 (Chox-2.7)| Length = 399 Score = 29.3 bits (64), Expect = 8.4 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +2 Query: 308 KSAEGFSDVKSNEKVQP--QRRKLFRIPPEAVQV--LRKSFAESELPTREVKENLSTELG 475 KS+ ++ S EK P K R + Q+ L K F + R + ++ L Sbjct: 138 KSSSPSTETCSGEKTPPGSSASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLN 197 Query: 476 ISFEKIDKWFKNTRCAALRDRKAEG 550 +S +I WF+N R +D+K++G Sbjct: 198 LSERQIKIWFQNRRMKYKKDQKSKG 222
>HXD13_HETFR (Q9IA17) Homeobox protein Hox-D13| Length = 284 Score = 29.3 bits (64), Expect = 8.4 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +2 Query: 359 QRRKLFRIPPEAVQV--LRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +R + R+P Q+ L + +A ++ T+E + +ST ++ ++ WF+N R Sbjct: 215 RRGRKKRVPYTKTQLKELEREYATNKFITKEKRRRISTATNLTERQVTIWFQNRR 269
>HD7_ENCCU (Q8SW50) Homeobox protein HD-7 (EcHD-7)| Length = 148 Score = 29.3 bits (64), Expect = 8.4 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 398 QVLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 517 +VL+K + + PT E K ++ + +S +D WF+N R Sbjct: 75 EVLKKVYQATPYPTWENKIDIGILISLSPRAVDIWFQNKR 114
>ZA2G_MOUSE (Q64726) Zinc-alpha-2-glycoprotein precursor| (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) Length = 307 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +2 Query: 26 LYSPNDDIPGFISADFTDAEGFYHTNSNLGIDSGDDDAAEMLTYQRPKKEVDYKRLNEEM 205 L P+ P F + F + + F+H NSN G +++ + +KE +R EE+ Sbjct: 32 LSRPSKGFPRFQATAFLNDQAFFHYNSNSGKAEPVGPWSQVEGMEDWEKESQLQRAREEI 91 Query: 206 F 208 F Sbjct: 92 F 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,450,267 Number of Sequences: 219361 Number of extensions: 1533116 Number of successful extensions: 5577 Number of sequences better than 10.0: 255 Number of HSP's better than 10.0 without gapping: 5395 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5561 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
