ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9m24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-prote... 186 8e-45
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 101 4e-19
3dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 4e-19
4dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 4e-19
5dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 4e-19
6dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 4e-19
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 101 4e-19
8emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb... 101 4e-19
9gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence 94 9e-17
10gb|AY108518.1| Zea mays PCO123570 mRNA sequence 94 9e-17
11dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-14
12gb|AF030515.1|AF030515 Canavalia lineata chaperonin 60 alpha sub... 58 5e-06
13ref|NM_125033.3| Arabidopsis thaliana ATP binding / protein bind... 46 0.019
14ref|NM_001037006.1| Arabidopsis thaliana ATP binding / protein b... 46 0.019
15ref|NM_179480.1| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA... 46 0.019
16ref|NM_104424.2| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA... 46 0.019
17gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, comp... 46 0.019
18gb|AY081501.1| Arabidopsis thaliana Rubisco subunit binding-prot... 46 0.019
19gb|AF386945.1|AF386945 Arabidopsis thaliana Rubisco subunit bind... 46 0.019
20emb|BX814891.1|CNS0ADZ4 Arabidopsis thaliana Full-length cDNA Co... 46 0.019
21emb|BX831822.1|CNS09YNB Arabidopsis thaliana Full-length cDNA Co... 46 0.019
22dbj|AB019234.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 46 0.019
23ref|NM_112193.1| Arabidopsis thaliana ATP binding / protein bind... 44 0.076
24dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.076
25gb|M35600.1|BNA60CPNB B.napus plastid 60-kDa chaperonin-60 beta-... 42 0.30
26ref|XM_967242.1| PREDICTED: Tribolium castaneum similar to CG101... 38 4.7
27gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosom... 38 4.7
28gb|AF239164.1| Rhizobium leguminosarum cpn-3 (groE) operon, comp... 38 4.7
29gb|AC154126.2| Mus musculus BAC clone RP23-471O11 from chromosom... 38 4.7 
>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit
          Length = 1834

 Score =  186 bits (94), Expect = 8e-45
 Identities = 99/101 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   actcttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagt 63
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 781 actcttgttgttaacaagctcagaggtattattaatgttgcggcgatcaaagccccaagt 840

                                                    
Query: 64  ttcggtgagcggcggaaggctgtccttnaggatattgccat 104
           ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 841 ttcggtgagcggcggaaggctgtccttcaggatattgccat 881
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  101 bits (51), Expect = 4e-19
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                            
Query: 7        cttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagtttc 66
                ||||||||||| |||||| |||| ||| | || ||||| || ||||||||||||||||| 
Sbjct: 10295121 cttgttgttaataagctccgaggaattctcaatgttgcagcaatcaaagccccaagtttt 10295180

                                                      
Query: 67       ggtgagcggcggaaggctgtccttnaggatattgccat 104
                |||||||| || |||||||||||| |||||||||||||
Sbjct: 10295181 ggtgagcgacgcaaggctgtccttcaggatattgccat 10295218
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>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full
            insert sequence
          Length = 2070

 Score =  101 bits (51), Expect = 4e-19
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                        
Query: 7    cttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagtttc 66
            ||||||||||| |||||| |||| ||| | || ||||| || ||||||||||||||||| 
Sbjct: 976  cttgttgttaataagctccgaggaattctcaatgttgcagcaatcaaagccccaagtttt 1035

                                                  
Query: 67   ggtgagcggcggaaggctgtccttnaggatattgccat 104
            |||||||| || |||||||||||| |||||||||||||
Sbjct: 1036 ggtgagcgacgcaaggctgtccttcaggatattgccat 1073
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>dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D06, full
           insert sequence
          Length = 1119

 Score =  101 bits (51), Expect = 4e-19
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                       
Query: 7   cttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagtttc 66
           ||||||||||| |||||| |||| ||| | || ||||| || ||||||||||||||||| 
Sbjct: 45  cttgttgttaataagctccgaggaattctcaatgttgcagcaatcaaagccccaagtttt 104

                                                 
Query: 67  ggtgagcggcggaaggctgtccttnaggatattgccat 104
           |||||||| || |||||||||||| |||||||||||||
Sbjct: 105 ggtgagcgacgcaaggctgtccttcaggatattgccat 142
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>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full
           insert sequence
          Length = 1543

 Score =  101 bits (51), Expect = 4e-19
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                       
Query: 7   cttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagtttc 66
           ||||||||||| |||||| |||| ||| | || ||||| || ||||||||||||||||| 
Sbjct: 503 cttgttgttaataagctccgaggaattctcaatgttgcagcaatcaaagccccaagtttt 562

                                                 
Query: 67  ggtgagcggcggaaggctgtccttnaggatattgccat 104
           |||||||| || |||||||||||| |||||||||||||
Sbjct: 563 ggtgagcgacgcaaggctgtccttcaggatattgccat 600
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>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full
            insert sequence
          Length = 1985

 Score =  101 bits (51), Expect = 4e-19
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                        
Query: 7    cttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagtttc 66
            ||||||||||| |||||| |||| ||| | || ||||| || ||||||||||||||||| 
Sbjct: 974  cttgttgttaataagctccgaggaattctcaatgttgcagcaatcaaagccccaagtttt 1033

                                                  
Query: 67   ggtgagcggcggaaggctgtccttnaggatattgccat 104
            |||||||| || |||||||||||| |||||||||||||
Sbjct: 1034 ggtgagcgacgcaaggctgtccttcaggatattgccat 1071
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  101 bits (51), Expect = 4e-19
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                            
Query: 7        cttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagtttc 66
                ||||||||||| |||||| |||| ||| | || ||||| || ||||||||||||||||| 
Sbjct: 10295003 cttgttgttaataagctccgaggaattctcaatgttgcagcaatcaaagccccaagtttt 10295062

                                                      
Query: 67       ggtgagcggcggaaggctgtccttnaggatattgccat 104
                |||||||| || |||||||||||| |||||||||||||
Sbjct: 10295063 ggtgagcgacgcaaggctgtccttcaggatattgccat 10295100
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>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135439

 Score =  101 bits (51), Expect = 4e-19
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                         
Query: 7     cttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagtttc 66
             ||||||||||| |||||| |||| ||| | || ||||| || ||||||||||||||||| 
Sbjct: 58040 cttgttgttaataagctccgaggaattctcaatgttgcagcaatcaaagccccaagtttt 58099

                                                   
Query: 67    ggtgagcggcggaaggctgtccttnaggatattgccat 104
             |||||||| || |||||||||||| |||||||||||||
Sbjct: 58100 ggtgagcgacgcaaggctgtccttcaggatattgccat 58137
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>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence
          Length = 2106

 Score = 93.7 bits (47), Expect = 9e-17
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                        
Query: 4    actcttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagt 63
            ||||||||||||||||||||  |||| ||| | || ||||| ||||| || || ||||||
Sbjct: 976  actcttgttgttaacaagcttcgaggaattctcaatgttgcagcgattaaggctccaagt 1035

                                                      
Query: 64   ttcggtgagcggcggaaggctgtccttnaggatattgccatc 105
            || |||||||||||||||||||| ||| |||| |||||||||
Sbjct: 1036 tttggtgagcggcggaaggctgtacttcaggacattgccatc 1077
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>gb|AY108518.1| Zea mays PCO123570 mRNA sequence
          Length = 1387

 Score = 93.7 bits (47), Expect = 9e-17
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   actcttgttgttaacaagctcagaggtattattaacgttgcggcgatcaaagccccaagt 63
           ||||||||||||||||||||  |||| ||| | || ||||| ||||| || || ||||||
Sbjct: 235 actcttgttgttaacaagcttcgaggaattctcaatgttgcagcgattaaggctccaagt 294

                                                     
Query: 64  ttcggtgagcggcggaaggctgtccttnaggatattgccatc 105
           || |||||||||||||||||||| ||| |||| |||||||||
Sbjct: 295 tttggtgagcggcggaaggctgtacttcaggacattgccatc 336
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>dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B08, full
           insert sequence
          Length = 1087

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                       
Query: 19  aagctcagaggtattattaacgttgcggcgatcaaagccccaagtttcggtgagcggcgg 78
           |||||| |||| ||| | || ||||| || ||||||||||||||||| |||||||| || 
Sbjct: 5   aagctccgaggaattctcaatgttgcagcaatcaaagccccaagttttggtgagcgacgc 64

                                     
Query: 79  aaggctgtccttnaggatattgccat 104
           |||||||||||| |||||||||||||
Sbjct: 65  aaggctgtccttcaggatattgccat 90
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>gb|AF030515.1|AF030515 Canavalia lineata chaperonin 60 alpha subunit mRNA, nuclear gene
            encoding chloroplast protein, complete cds
          Length = 2040

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                    
Query: 49   atcaaagccccaagtttcggtgagcggcggaaggctgtccttnaggatattgccat 104
            |||||||| || || || ||||||||||| |||||||||||| | |||||||||||
Sbjct: 1028 atcaaagctcctagctttggtgagcggcgaaaggctgtccttcaagatattgccat 1083
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>ref|NM_125033.3| Arabidopsis thaliana ATP binding / protein binding AT5G56500
            transcript variant AT5G56500.1 mRNA, complete cds
          Length = 2315

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1    gcgactcttgttgttaacaagct 23
            |||||||||||||||||||||||
Sbjct: 1019 gcgactcttgttgttaacaagct 1041
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>ref|NM_001037006.1| Arabidopsis thaliana ATP binding / protein binding AT5G56500
            transcript variant AT5G56500.2 mRNA, complete cds
          Length = 2355

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1    gcgactcttgttgttaacaagct 23
            |||||||||||||||||||||||
Sbjct: 1059 gcgactcttgttgttaacaagct 1081
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>ref|NM_179480.1| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding /
            protein binding AT1G55490 (CPN60B) transcript variant
            AT1G55490.2 mRNA, complete cds
          Length = 2060

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 1    gcgactcttgttgttaacaagctcagaggta 31
            |||||||||||||| |||||||| |||||||
Sbjct: 1043 gcgactcttgttgtaaacaagcttagaggta 1073
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>ref|NM_104424.2| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding /
            protein binding AT1G55490 (CPN60B) transcript variant
            AT1G55490.1 mRNA, complete cds
          Length = 2087

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 1    gcgactcttgttgttaacaagctcagaggta 31
            |||||||||||||| |||||||| |||||||
Sbjct: 1070 gcgactcttgttgtaaacaagcttagaggta 1100
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>gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, complete sequence
          Length = 87967

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 1     gcgactcttgttgttaacaagctcagaggta 31
             |||||||||||||| |||||||| |||||||
Sbjct: 53660 gcgactcttgttgtaaacaagcttagaggta 53690
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>gb|AY081501.1| Arabidopsis thaliana Rubisco subunit binding-protein beta subunit
           (At1g55490) mRNA, complete cds
          Length = 1844

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 1   gcgactcttgttgttaacaagctcagaggta 31
           |||||||||||||| |||||||| |||||||
Sbjct: 940 gcgactcttgttgtaaacaagcttagaggta 970
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>gb|AF386945.1|AF386945 Arabidopsis thaliana Rubisco subunit binding-protein beta subunit
            (T5A14.11) mRNA, complete cds
          Length = 2060

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 1    gcgactcttgttgttaacaagctcagaggta 31
            |||||||||||||| |||||||| |||||||
Sbjct: 1062 gcgactcttgttgtaaacaagcttagaggta 1092
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>emb|BX814891.1|CNS0ADZ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS16ZG05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2000

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 1    gcgactcttgttgttaacaagctcagaggta 31
            |||||||||||||| |||||||| |||||||
Sbjct: 1025 gcgactcttgttgtaaacaagcttagaggta 1055
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>emb|BX831822.1|CNS09YNB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH31ZC11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1462

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 1   gcgactcttgttgttaacaagct 23
           |||||||||||||||||||||||
Sbjct: 413 gcgactcttgttgttaacaagct 435
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>dbj|AB019234.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKN22
          Length = 27229

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 1   gcgactcttgttgttaacaagct 23
           |||||||||||||||||||||||
Sbjct: 847 gcgactcttgttgttaacaagct 869
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>ref|NM_112193.1| Arabidopsis thaliana ATP binding / protein binding AT3G13470 mRNA,
           complete cds
          Length = 1922

 Score = 44.1 bits (22), Expect = 0.076
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 4   actcttgttgttaacaagctcagagg 29
           |||||||||||||||||||| |||||
Sbjct: 931 actcttgttgttaacaagcttagagg 956
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>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15
          Length = 83287

 Score = 44.1 bits (22), Expect = 0.076
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 4     actcttgttgttaacaagctcagagg 29
             |||||||||||||||||||| |||||
Sbjct: 44956 actcttgttgttaacaagcttagagg 44981
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>gb|M35600.1|BNA60CPNB B.napus plastid 60-kDa chaperonin-60 beta-polypeptide (cpn-60 beta)
            mRNA, partial cds
          Length = 1982

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 1    gcgactcttgttgttaacaagctcagagg 29
            ||||| ||||||||||||||||| |||||
Sbjct: 1003 gcgacccttgttgttaacaagcttagagg 1031
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>ref|XM_967242.1| PREDICTED: Tribolium castaneum similar to CG10175-PC, isoform C
           (LOC661053), partial mRNA
          Length = 1617

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 50  tcaaagccccaagtttcgg 68
           |||||||||||||||||||
Sbjct: 995 tcaaagccccaagtttcgg 977
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>gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosome 7, complete sequence
          Length = 198646

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     agctcagaggtattattaa 38
              |||||||||||||||||||
Sbjct: 187411 agctcagaggtattattaa 187393
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>gb|AF239164.1| Rhizobium leguminosarum cpn-3 (groE) operon, complete sequence
          Length = 2947

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1    gcgactcttgttgttaacaagct 23
            ||||| |||||||||||||||||
Sbjct: 2057 gcgacgcttgttgttaacaagct 2079
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>gb|AC154126.2| Mus musculus BAC clone RP23-471O11 from chromosome 7, complete sequence
          Length = 198860

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     agctcagaggtattattaa 38
              |||||||||||||||||||
Sbjct: 158030 agctcagaggtattattaa 158048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 491,677
Number of Sequences: 3902068
Number of extensions: 491677
Number of successful extensions: 29301
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29262
Number of HSP's gapped (non-prelim): 39
length of query: 105
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 84
effective length of database: 17,151,101,840
effective search space: 1440692554560
effective search space used: 1440692554560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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