ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9m23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome... 151 2e-33
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
3dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
4dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
5dbj|AK065778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
6emb|AJ890024.1| Zea mays partial mRNA for putative translation i... 96 1e-16
7gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.35
8emb|AL355357.13| Human DNA sequence from clone RP11-69I22 on chr... 42 1.4
9gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromo... 42 1.4
10gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chrom... 42 1.4
11ref|NM_069932.2| Caenorhabditis elegans C42C1.5 (guanyltransfera... 42 1.4
12gb|AF043695.2| Caenorhabditis elegans cosmid C42C1, complete seq... 42 1.4
13ref|NM_016341.2| Homo sapiens phospholipase C, epsilon 1 (PLCE1)... 40 5.5
14ref|XM_711369.1| Candida albicans SC5314 p100-like putative TFII... 40 5.5
15gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome... 40 5.5
16gb|AC124951.19| Medicago truncatula clone mth2-7p23, complete se... 40 5.5
17gb|AC158580.3| Mus musculus chromosome 1, clone RP24-97G17, comp... 40 5.5
18emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on... 40 5.5
19gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.5
20gb|AF170071.1|AF170071 Homo sapiens phospholipase C epsilon mRNA... 40 5.5
21gb|AF190642.2|AF190642 Homo sapiens phosphoinositide-specific ph... 40 5.5
22dbj|AB040949.2| Homo sapiens mRNA for KIAA1516 protein, partial cds 40 5.5
23gb|AF117948.1|AF117948 Homo sapiens pancreas-enriched phospholip... 40 5.5
24ref|NM_207852.1| Eremothecium gossypii AAL043Cp (AAL043C), mRNA 40 5.5

>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0028C22, complete sequence
          Length = 154228

 Score =  151 bits (76), Expect = 2e-33
 Identities = 127/144 (88%)
 Strand = Plus / Plus

                                                                          
Query: 15     tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74
              |||||||||||| ||||||||||||||||||  |||||||  |||| | |||||||||||
Sbjct: 114340 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 114399

                                                                          
Query: 75     ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134
              | | | ||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 114400 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 114459

                                      
Query: 135    gcgcagtccgtatagagtgctgat 158
              |||| || || ||||| |||||||
Sbjct: 114460 gcgcggttcggatagaatgctgat 114483



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  151 bits (76), Expect = 2e-33
 Identities = 127/144 (88%)
 Strand = Plus / Plus

                                                                            
Query: 15       tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74
                |||||||||||| ||||||||||||||||||  |||||||  |||| | |||||||||||
Sbjct: 19787073 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 19787132

                                                                            
Query: 75       ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134
                | | | ||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 19787133 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 19787192

                                        
Query: 135      gcgcagtccgtatagagtgctgat 158
                |||| || || ||||| |||||||
Sbjct: 19787193 gcgcggttcggatagaatgctgat 19787216



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>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0034B12
          Length = 124083

 Score =  151 bits (76), Expect = 2e-33
 Identities = 127/144 (88%)
 Strand = Plus / Plus

                                                                         
Query: 15    tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74
             |||||||||||| ||||||||||||||||||  |||||||  |||| | |||||||||||
Sbjct: 11513 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 11572

                                                                         
Query: 75    ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134
             | | | ||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 11573 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 11632

                                     
Query: 135   gcgcagtccgtatagagtgctgat 158
             |||| || || ||||| |||||||
Sbjct: 11633 gcgcggttcggatagaatgctgat 11656



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>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0450E05
          Length = 176553

 Score =  151 bits (76), Expect = 2e-33
 Identities = 127/144 (88%)
 Strand = Plus / Plus

                                                                          
Query: 15     tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74
              |||||||||||| ||||||||||||||||||  |||||||  |||| | |||||||||||
Sbjct: 132759 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 132818

                                                                          
Query: 75     ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134
              | | | ||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 132819 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 132878

                                      
Query: 135    gcgcagtccgtatagagtgctgat 158
              |||| || || ||||| |||||||
Sbjct: 132879 gcgcggttcggatagaatgctgat 132902



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>dbj|AK065778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036C01, full
            insert sequence
          Length = 2727

 Score =  151 bits (76), Expect = 2e-33
 Identities = 127/144 (88%)
 Strand = Plus / Plus

                                                                        
Query: 15   tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74
            |||||||||||| ||||||||||||||||||  |||||||  |||| | |||||||||||
Sbjct: 2229 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 2288

                                                                        
Query: 75   ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134
            | | | ||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 2289 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 2348

                                    
Query: 135  gcgcagtccgtatagagtgctgat 158
            |||| || || ||||| |||||||
Sbjct: 2349 gcgcggttcggatagaatgctgat 2372



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>emb|AJ890024.1| Zea mays partial mRNA for putative translation initiation factor
           IF-2 (if-2 gene), cultivar A69Y, from endosperm tissue
          Length = 640

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 96/112 (85%)
 Strand = Plus / Plus

                                                                       
Query: 15  tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74
           |||| ||||||| |||||||||  |||||||  |||| ||||| || | |||||| ||||
Sbjct: 407 tcgaaaagggtaacgactgtgggctggtgattcaggattgcgatgatttccaggtagggg 466

                                                               
Query: 75  ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgac 126
           ||| ||| |||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct: 467 atatcatacagtgcgtggagcaggtgattaggaagcccaagttcatctcgac 518



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 39      tggtgatcgaggactgcgacga 60
               ||||||||||||||||||||||
Sbjct: 1828871 tggtgatcgaggactgcgacga 1828892



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>emb|AL355357.13| Human DNA sequence from clone RP11-69I22 on chromosome 6, complete
              sequence
          Length = 116261

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 383    tcatatattcttgcagttttc 403
              |||||||||||||||||||||
Sbjct: 104269 tcatatattcttgcagttttc 104289



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>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete
            sequence
          Length = 197430

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 383  tcatatattcttgcagttttc 403
            |||||||||||||||||||||
Sbjct: 2409 tcatatattcttgcagttttc 2429



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>gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chromosome 6, complete
             sequence
          Length = 168190

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 383   tcatatattcttgcagttttc 403
             |||||||||||||||||||||
Sbjct: 74630 tcatatattcttgcagttttc 74650



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>ref|NM_069932.2| Caenorhabditis elegans C42C1.5 (guanyltransferase) mRNA, complete
           cds
          Length = 1440

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 199 gaattcaaccatttgtttgaa 219
           |||||||||||||||||||||
Sbjct: 390 gaattcaaccatttgtttgaa 370



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>gb|AF043695.2| Caenorhabditis elegans cosmid C42C1, complete sequence
          Length = 44686

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 199   gaattcaaccatttgtttgaa 219
             |||||||||||||||||||||
Sbjct: 18964 gaattcaaccatttgtttgaa 18984



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>ref|NM_016341.2| Homo sapiens phospholipase C, epsilon 1 (PLCE1), mRNA
          Length = 7609

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   ccatccagtgcttggagcag 97
            ||||||||||||||||||||
Sbjct: 3782 ccatccagtgcttggagcag 3801



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>ref|XM_711369.1| Candida albicans SC5314 p100-like putative TFIIE-interacting
            transcriptional coactivator (CaO19_7328), mRNA
          Length = 2706

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 211  ttgtttgaactgaccaaaattttg 234
            ||||||||||||| ||||||||||
Sbjct: 2055 ttgtttgaactgagcaaaattttg 2032



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>gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome 1, complete sequence
          Length = 157891

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   gagagaggaaactggagtca 385
             ||||||||||||||||||||
Sbjct: 42545 gagagaggaaactggagtca 42564



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>gb|AC124951.19| Medicago truncatula clone mth2-7p23, complete sequence
          Length = 124973

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 360   acatttgagagaggaaactggagtcata 387
             ||||||||||||| ||| ||||||||||
Sbjct: 26104 acatttgagagagaaaaatggagtcata 26131



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>gb|AC158580.3| Mus musculus chromosome 1, clone RP24-97G17, complete sequence
          Length = 159618

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   gagagaggaaactggagtca 385
             ||||||||||||||||||||
Sbjct: 33193 gagagaggaaactggagtca 33174



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>emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on chromosome 20q13.12 Contains
             the 3' end of the L3MBTL gene for l(3)mbt-like
             (Drosophila), the SGK2 gene for serum/glucocorticoid
             regulated kinase 2, the 5' end of the C20orf9 gene (NGD5,
             CGI-53), an HSPC194 pseudogene and a CpG island, complete
             sequence
          Length = 84323

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   aaagattgagatgctttggc 343
             ||||||||||||||||||||
Sbjct: 39839 aaagattgagatgctttggc 39858



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>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    caacacccagcacctatcga 307
              ||||||||||||||||||||
Sbjct: 267269 caacacccagcacctatcga 267250



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>gb|AF170071.1|AF170071 Homo sapiens phospholipase C epsilon mRNA, partial cds
          Length = 5982

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   ccatccagtgcttggagcag 97
            ||||||||||||||||||||
Sbjct: 2623 ccatccagtgcttggagcag 2642



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>gb|AF190642.2|AF190642 Homo sapiens phosphoinositide-specific phospholipase C PLC-epsilon
            mRNA, complete cds
          Length = 7609

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   ccatccagtgcttggagcag 97
            ||||||||||||||||||||
Sbjct: 3782 ccatccagtgcttggagcag 3801



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>dbj|AB040949.2| Homo sapiens mRNA for KIAA1516 protein, partial cds
          Length = 7989

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   ccatccagtgcttggagcag 97
            ||||||||||||||||||||
Sbjct: 4181 ccatccagtgcttggagcag 4200



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>gb|AF117948.1|AF117948 Homo sapiens pancreas-enriched phospholipase C mRNA, complete cds
          Length = 4069

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ccatccagtgcttggagcag 97
           ||||||||||||||||||||
Sbjct: 256 ccatccagtgcttggagcag 275



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>ref|NM_207852.1| Eremothecium gossypii AAL043Cp (AAL043C), mRNA
          Length = 1617

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  caacacccagcacctatcga 307
            ||||||||||||||||||||
Sbjct: 1206 caacacccagcacctatcga 1225


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,922,134
Number of Sequences: 3902068
Number of extensions: 2922134
Number of successful extensions: 50848
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50782
Number of HSP's gapped (non-prelim): 66
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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