Clone Name | bags9m23 |
---|---|
Clone Library Name | barley_pub |
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0028C22, complete sequence Length = 154228 Score = 151 bits (76), Expect = 2e-33 Identities = 127/144 (88%) Strand = Plus / Plus Query: 15 tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74 |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||||||| Sbjct: 114340 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 114399 Query: 75 ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134 | | | ||||||||||||||||||| |||||||||||||||||||| || |||||||||| Sbjct: 114400 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 114459 Query: 135 gcgcagtccgtatagagtgctgat 158 |||| || || ||||| ||||||| Sbjct: 114460 gcgcggttcggatagaatgctgat 114483
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 151 bits (76), Expect = 2e-33 Identities = 127/144 (88%) Strand = Plus / Plus Query: 15 tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74 |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||||||| Sbjct: 19787073 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 19787132 Query: 75 ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134 | | | ||||||||||||||||||| |||||||||||||||||||| || |||||||||| Sbjct: 19787133 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 19787192 Query: 135 gcgcagtccgtatagagtgctgat 158 |||| || || ||||| ||||||| Sbjct: 19787193 gcgcggttcggatagaatgctgat 19787216
>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0034B12 Length = 124083 Score = 151 bits (76), Expect = 2e-33 Identities = 127/144 (88%) Strand = Plus / Plus Query: 15 tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74 |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||||||| Sbjct: 11513 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 11572 Query: 75 ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134 | | | ||||||||||||||||||| |||||||||||||||||||| || |||||||||| Sbjct: 11573 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 11632 Query: 135 gcgcagtccgtatagagtgctgat 158 |||| || || ||||| ||||||| Sbjct: 11633 gcgcggttcggatagaatgctgat 11656
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 151 bits (76), Expect = 2e-33 Identities = 127/144 (88%) Strand = Plus / Plus Query: 15 tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74 |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||||||| Sbjct: 132759 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 132818 Query: 75 ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134 | | | ||||||||||||||||||| |||||||||||||||||||| || |||||||||| Sbjct: 132819 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 132878 Query: 135 gcgcagtccgtatagagtgctgat 158 |||| || || ||||| ||||||| Sbjct: 132879 gcgcggttcggatagaatgctgat 132902
>dbj|AK065778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036C01, full insert sequence Length = 2727 Score = 151 bits (76), Expect = 2e-33 Identities = 127/144 (88%) Strand = Plus / Plus Query: 15 tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74 |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||||||| Sbjct: 2229 tcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttgggg 2288 Query: 75 ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgacacaaagcg 134 | | | ||||||||||||||||||| |||||||||||||||||||| || |||||||||| Sbjct: 2289 acatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcg 2348 Query: 135 gcgcagtccgtatagagtgctgat 158 |||| || || ||||| ||||||| Sbjct: 2349 gcgcggttcggatagaatgctgat 2372
>emb|AJ890024.1| Zea mays partial mRNA for putative translation initiation factor IF-2 (if-2 gene), cultivar A69Y, from endosperm tissue Length = 640 Score = 95.6 bits (48), Expect = 1e-16 Identities = 96/112 (85%) Strand = Plus / Plus Query: 15 tcgacaagggtagcgactgtggattggtgatcgaggactgcgacgaataccaggttgggg 74 |||| ||||||| ||||||||| ||||||| |||| ||||| || | |||||| |||| Sbjct: 407 tcgaaaagggtaacgactgtgggctggtgattcaggattgcgatgatttccaggtagggg 466 Query: 75 ataccatccagtgcttggagcaggtgatcaggaagcccaagttcatatcgac 126 ||| ||| |||||| ||||||||||||| ||||||||||||||||| ||||| Sbjct: 467 atatcatacagtgcgtggagcaggtgattaggaagcccaagttcatctcgac 518
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 39 tggtgatcgaggactgcgacga 60 |||||||||||||||||||||| Sbjct: 1828871 tggtgatcgaggactgcgacga 1828892
>emb|AL355357.13| Human DNA sequence from clone RP11-69I22 on chromosome 6, complete sequence Length = 116261 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 tcatatattcttgcagttttc 403 ||||||||||||||||||||| Sbjct: 104269 tcatatattcttgcagttttc 104289
>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete sequence Length = 197430 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 tcatatattcttgcagttttc 403 ||||||||||||||||||||| Sbjct: 2409 tcatatattcttgcagttttc 2429
>gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chromosome 6, complete sequence Length = 168190 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 tcatatattcttgcagttttc 403 ||||||||||||||||||||| Sbjct: 74630 tcatatattcttgcagttttc 74650
>ref|NM_069932.2| Caenorhabditis elegans C42C1.5 (guanyltransferase) mRNA, complete cds Length = 1440 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gaattcaaccatttgtttgaa 219 ||||||||||||||||||||| Sbjct: 390 gaattcaaccatttgtttgaa 370
>gb|AF043695.2| Caenorhabditis elegans cosmid C42C1, complete sequence Length = 44686 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gaattcaaccatttgtttgaa 219 ||||||||||||||||||||| Sbjct: 18964 gaattcaaccatttgtttgaa 18984
>ref|NM_016341.2| Homo sapiens phospholipase C, epsilon 1 (PLCE1), mRNA Length = 7609 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccatccagtgcttggagcag 97 |||||||||||||||||||| Sbjct: 3782 ccatccagtgcttggagcag 3801
>ref|XM_711369.1| Candida albicans SC5314 p100-like putative TFIIE-interacting transcriptional coactivator (CaO19_7328), mRNA Length = 2706 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ttgtttgaactgaccaaaattttg 234 ||||||||||||| |||||||||| Sbjct: 2055 ttgtttgaactgagcaaaattttg 2032
>gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome 1, complete sequence Length = 157891 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gagagaggaaactggagtca 385 |||||||||||||||||||| Sbjct: 42545 gagagaggaaactggagtca 42564
>gb|AC124951.19| Medicago truncatula clone mth2-7p23, complete sequence Length = 124973 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 360 acatttgagagaggaaactggagtcata 387 ||||||||||||| ||| |||||||||| Sbjct: 26104 acatttgagagagaaaaatggagtcata 26131
>gb|AC158580.3| Mus musculus chromosome 1, clone RP24-97G17, complete sequence Length = 159618 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 gagagaggaaactggagtca 385 |||||||||||||||||||| Sbjct: 33193 gagagaggaaactggagtca 33174
>emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on chromosome 20q13.12 Contains the 3' end of the L3MBTL gene for l(3)mbt-like (Drosophila), the SGK2 gene for serum/glucocorticoid regulated kinase 2, the 5' end of the C20orf9 gene (NGD5, CGI-53), an HSPC194 pseudogene and a CpG island, complete sequence Length = 84323 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 aaagattgagatgctttggc 343 |||||||||||||||||||| Sbjct: 39839 aaagattgagatgctttggc 39858
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 caacacccagcacctatcga 307 |||||||||||||||||||| Sbjct: 267269 caacacccagcacctatcga 267250
>gb|AF170071.1|AF170071 Homo sapiens phospholipase C epsilon mRNA, partial cds Length = 5982 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccatccagtgcttggagcag 97 |||||||||||||||||||| Sbjct: 2623 ccatccagtgcttggagcag 2642
>gb|AF190642.2|AF190642 Homo sapiens phosphoinositide-specific phospholipase C PLC-epsilon mRNA, complete cds Length = 7609 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccatccagtgcttggagcag 97 |||||||||||||||||||| Sbjct: 3782 ccatccagtgcttggagcag 3801
>dbj|AB040949.2| Homo sapiens mRNA for KIAA1516 protein, partial cds Length = 7989 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccatccagtgcttggagcag 97 |||||||||||||||||||| Sbjct: 4181 ccatccagtgcttggagcag 4200
>gb|AF117948.1|AF117948 Homo sapiens pancreas-enriched phospholipase C mRNA, complete cds Length = 4069 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccatccagtgcttggagcag 97 |||||||||||||||||||| Sbjct: 256 ccatccagtgcttggagcag 275
>ref|NM_207852.1| Eremothecium gossypii AAL043Cp (AAL043C), mRNA Length = 1617 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 caacacccagcacctatcga 307 |||||||||||||||||||| Sbjct: 1206 caacacccagcacctatcga 1225 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,922,134 Number of Sequences: 3902068 Number of extensions: 2922134 Number of successful extensions: 50848 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50782 Number of HSP's gapped (non-prelim): 66 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)