>MID2_YEAST (P36027) Mating process protein MID2 (Serine-rich protein SMS1)|
           (Protein kinase A interference protein)
          Length = 376

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 31/100 (31%), Positives = 46/100 (46%)
 Frame = -3

Query: 498 SSASHRSESISMVSTASNSLAFSASRMKSADTSGNITERDSTTARWXXXXXXXXXXPFDD 319
           S+ S    S+S VS++S+ L+ S     SAD+S   +   ST++R               
Sbjct: 37  SAVSTARSSVSRVSSSSSILSSSMVSSSSADSSSLTS---STSSRSLVSHTSSST----- 88

Query: 318 DSVEMLIFPRLSA*SSKERDSGSSYPADLSAVSLFSVSST 199
            S+  + F   S  S     S SS  +D S+ S FS+SST
Sbjct: 89  -SIASISFTSFSFSSDSSTSSSSSASSDSSSSSSFSISST 127

>Y657_MYCPN (P75134) Hypothetical protein MG443 homolog (K05_orf401)|
          Length = 401

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 197 ASQGPSFLSSSPRTETWRQARKERHLDST*KTAPLLW 87
           A+Q PS LS+   TE W  A+K   +D +    P LW
Sbjct: 152 ANQLPSMLSAVHHTEFWEDAKKAEGVDQSALFVPFLW 188

>NCAP_IBVSA (Q8JMI6) Nucleocapsid protein (N structural protein) (NC)|
          Length = 409

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 143 ASKSPFAESLKGKKDPEKQVDETEKSETADKSAGYELPESLSFDD 277
           +S +P  + LK +K P+KQ DE +K+ T+D+         L FDD
Sbjct: 351 SSPAPRQQRLKKEKRPKKQDDEVDKALTSDEERN---NAQLEFDD 392

>NCAP_IBVG (P32923) Nucleocapsid protein (N structural protein) (NC)|
          Length = 409

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 143 ASKSPFAESLKGKKDPEKQVDETEKSETADKSAGYELPESLSFDD 277
           +S +P  + LK +K P+KQ DE +K+ T+D+         L FDD
Sbjct: 351 SSPAPRQQRLKKEKRPKKQDDEVDKALTSDEERN---NAQLEFDD 392

>NCAP_CVTIN (Q9PZ51) Nucleocapsid protein (N structural protein) (NC)|
          Length = 409

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 146 SKSPFAESLKGKKDPEKQVDETEKSETADKSAGYELPESLSFDD 277
           S +P  + LK +K P+KQ DE +K+ T+D+         L FDD
Sbjct: 352 SPAPRQQRLKKEKKPKKQDDEVDKALTSDEERN---NAQLEFDD 392

>RMUC_RICPR (Q9ZCN3) DNA recombination protein rmuC homolog|
          Length = 426

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 110 KLNPDAAPFVPASKSPFAESLKGKKDPEKQVDETEKSETADKSAGYELPESLSFDDYAES 289
           KL PDA  F+P+      +S    K  +  VD  + S    K+  Y L +SL+  DYAE+
Sbjct: 204 KLRPDAIIFLPSGNLMVIDS----KASKFLVDSQDNSVNLSKTMNYHL-KSLANKDYAEN 258

Query: 290 L 292
           +
Sbjct: 259 I 259

>GLB_PSEDC (P26914) Extracellular globin precursor|
          Length = 333

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -2

Query: 460 EYCIEFIGLQCFKNEVS*HIWEHH*ERF-----HHGEMATRVTCLSSFSF 326
           E+ IEF+G +   +E + H W+   + F     HHG  + R  C++S  +
Sbjct: 131 EHFIEFLGSKTTLDEPTKHAWQEIGKEFSHEISHHGRHSVRDHCMNSLEY 180

>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic|
           region
          Length = 551

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 17/172 (9%)
 Frame = -3

Query: 573 SSHAAYVDEGS*CCGFPDTSAE*PLSSASHRSESISMVSTASNSLAFSASRMKSADTSGN 394
           SS +  V   S      + ++    SS S  S S +++S++S+   F+      A TS  
Sbjct: 104 SSSSMQVSSSSTSSSSSEVTSSSSSSSISPSSSSSTIISSSSSLPTFTV-----ASTSST 158

Query: 393 ITERDSTTARWXXXXXXXXXXPFDDDSVEMLIFPRLSA*-----------------SSKE 265
           +     +T+             F  +S   LI   +S                   SS  
Sbjct: 159 VASSTLSTSSSLVISTSSSTFTFSSESSSSLISSSISTSVSTSSVYVPSSSTSSPPSSSS 218

Query: 264 RDSGSSYPADLSAVSLFSVSSTCFSGSFFPFKLSANGDLEAGTKGAASGFNL 109
             + SSY +  S+ +LFS SS+  S S      S++    + +  ++S F L
Sbjct: 219 ELTSSSYSSSSSSSTLFSYSSSFSSSS--SSSSSSSSSSSSSSSSSSSYFTL 268

>YEO0_YEAST (P40033) Hypothetical 23.4 kDa protein in CAJ1-HOM3 intergenic|
           region
          Length = 202

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = +2

Query: 170 LKGKKDPEKQVDETEKSETADKSAGYELPESLSFDDYAESLGKINI 307
           +K KK    ++  T++++  D+S   +LP+   +D +  S+G+I++
Sbjct: 86  IKEKKSVNIEMGRTQQTKKIDQSLSKKLPKGTIYDPFDFSMGRIHL 131

>YJF8_YEAST (P47041) Hypothetical 60.8 kDa protein in BTN1-PEP8 intergenic|
           region
          Length = 543

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 505 TVIISFAQIGKHINGEYCIEFIGLQCFKNEV 413
           TV+ S  +   HING Y I F+ L CF++ +
Sbjct: 442 TVLKSGNESRTHINGNYSIGFLLLMCFRDSI 472

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
 Frame = -3

Query: 498 SSASHRSESISMVSTASNSLA----FSASRMKSADTSGNITERDSTTARWXXXXXXXXXX 331
           +SAS  S S++  S  S+SLA     S+S   S+ TS ++     T++            
Sbjct: 100 TSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSL 159

Query: 330 PFDDDSVEMLIFPRLSA*SSKERDSGSSYPADLSAVSLFSVSST 199
                +      P  SA SS    + +S  A  S+++  S++ST
Sbjct: 160 ASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNST 203

>YCAJ_ECOLI (P0AAZ4) Hypothetical protein ycaJ|
          Length = 447

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 389 VMFPDVSADFILEALKANEFDAVLTIDMLSDLCEADDNG 505
           ++ PD +   I E +  +   A+ T++M++D+ E DD+G
Sbjct: 190 IVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSG 228

>YCAJ_ECOL6 (P0AAZ5) Hypothetical protein ycaJ|
          Length = 447

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 389 VMFPDVSADFILEALKANEFDAVLTIDMLSDLCEADDNG 505
           ++ PD +   I E +  +   A+ T++M++D+ E DD+G
Sbjct: 190 IVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSG 228

>YCAJ_ECO57 (P0AAZ6) Hypothetical protein ycaJ|
          Length = 447

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 389 VMFPDVSADFILEALKANEFDAVLTIDMLSDLCEADDNG 505
           ++ PD +   I E +  +   A+ T++M++D+ E DD+G
Sbjct: 190 IVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSG 228

>CDSN_MOUSE (Q7TPC1) Corneodesmosin precursor|
          Length = 561

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 43  SPAPLPPVGVEVC*IQSNGAVF*VESRCRSFRACL 147
           SP P+P VGV++C + S G V      CRS R  L
Sbjct: 502 SPQPVPSVGVKLCGLNSPGRV-----PCRSIRNIL 531


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,254,790
Number of Sequences: 219361
Number of extensions: 1267845
Number of successful extensions: 4052
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4048
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)