ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9m20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
2dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
4dbj|AP005725.4| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
5dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
6ref|XM_450124.1| Oryza sativa (japonica cultivar-group), mRNA 147 5e-32
7gb|AC025448.6| Homo sapiens chromosome 5 clone CTD-2113L7, compl... 42 2.1
8dbj|AP000787.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.1
9gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome 40 8.4
10gb|AC167138.6| Mus musculus chromosome 15, clone RP24-358O3, com... 40 8.4
11ref|XM_471744.1| Oryza sativa (japonica cultivar-group), predic... 40 8.4
12gb|AC119834.12| Mus musculus chromosome 5, clone RP24-383P24, co... 40 8.4
13gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 40 8.4
14gb|AC147038.2| Pan troglodytes BAC clone RP43-112D23 from 7, com... 40 8.4
15gb|AC124475.3| Mus musculus BAC clone RP24-92F8 from chromosome ... 40 8.4
16gb|L11665.1|MTVNGHYPER Obuda pepper virus RNA 40 8.4
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.4
18gb|BC030398.1| Mus musculus RIKEN cDNA E230013L22 gene, mRNA (cD... 40 8.4
19emb|CR392366.4| Zebrafish DNA sequence from clone DKEY-51D17 in ... 40 8.4
20emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 40 8.4
21gb|AF228661.4| Homo sapiens chromosome 8 clone CTD-3015B2 map q1... 40 8.4
22gb|AF149786.3| Homo sapiens chromosome 8 clone GS1-190e2 map q11... 40 8.4
23gb|AC104939.7| Homo sapiens chromosome 8, clone CTD-3015B2, comp... 40 8.4
24gb|AC104232.5| Homo sapiens chromosome 8, clone RP11-1D12, compl... 40 8.4
25gb|AC093182.3| Homo sapiens chromosome 7 clone RP11-19B3, comple... 40 8.4
26emb|BX005126.10| Zebrafish DNA sequence from clone CH211-129O9 i... 40 8.4
27gb|AC158994.4| Mus musculus BAC clone RP24-79P8 from chromosome ... 40 8.4
28emb|BX510647.10| Zebrafish DNA sequence from clone CH211-87N9 in... 40 8.4
29dbj|AK054035.1| Mus musculus 2 days pregnant adult female oviduc... 40 8.4
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
32dbj|AB222209.1| Tetrahymena thermophila MYO4 mRNA for myosin 4, ... 40 8.4
33gb|AC009518.9| Homo sapiens chromosome 7 clone RP11-193I17, comp... 40 8.4
34gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromos... 40 8.4
35gb|AC154742.2| Mus musculus BAC clone RP24-392F16 from 13, compl... 40 8.4
36dbj|AP003082.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.4
37dbj|D13438.1|MTVGRNA Obuda pepper virus genomic RNA for 130K pro... 40 8.4
38gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 40 8.4
39gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge... 40 8.4 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  161 bits (81), Expect = 3e-36
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                           
Query: 189     ctgagaagcaagtagatgagactgaaaagagtgagaccgctgacaagtctgctgggtatg 248
               ||||||||||||||| ||| |||||||||  |||||  ||||||||||||||||  ||||
Sbjct: 1907343 ctgagaagcaagtaggtgatactgaaaaggatgagaatgctgacaagtctgctgaatatg 1907402

                                                                           
Query: 249     aactcccagagtccctttcttttgatgactatgctgaaagcctaggaaagatcaacatct 308
               | |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct: 1907403 agctcccagattccctttctttggatgactatgctgaaagcctaggaaagctcaacattt 1907462

                                            
Query: 309     ctaccgagtcatcatcaaaaggagaagct 337
               || | || || ||||||||||||||||||
Sbjct: 1907463 ctgcagaatcttcatcaaaaggagaagct 1907491



 Score =  117 bits (59), Expect = 4e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                           
Query: 362     catctcgccgtggtggaatctctctcagtgatgttcccagatgtgtcagctgacttcatt 421
               ||||| || ||||| ||||||||||||  |||||||||||||||||| || |||||||||
Sbjct: 1907543 catcttgctgtggtagaatctctctcaaagatgttcccagatgtgtctgccgacttcatt 1907602

                                                                           
Query: 422     cttgaagcactgaaggccaatgaattcgatgcagtactcaccattgatatgctttccgat 481
                ||||||||||||||||| ||||||| ||| ||| |||||| || ||||||||| | |||
Sbjct: 1907603 gttgaagcactgaaggcccatgaatttgatacagaactcacaatcgatatgcttgctgat 1907662

                  
Query: 482     ctg 484
               |||
Sbjct: 1907663 ctg 1907665
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0081C13
          Length = 144624

 Score =  161 bits (81), Expect = 3e-36
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                         
Query: 189   ctgagaagcaagtagatgagactgaaaagagtgagaccgctgacaagtctgctgggtatg 248
             ||||||||||||||| ||| |||||||||  |||||  ||||||||||||||||  ||||
Sbjct: 46904 ctgagaagcaagtaggtgatactgaaaaggatgagaatgctgacaagtctgctgaatatg 46963

                                                                         
Query: 249   aactcccagagtccctttcttttgatgactatgctgaaagcctaggaaagatcaacatct 308
             | |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct: 46964 agctcccagattccctttctttggatgactatgctgaaagcctaggaaagctcaacattt 47023

                                          
Query: 309   ctaccgagtcatcatcaaaaggagaagct 337
             || | || || ||||||||||||||||||
Sbjct: 47024 ctgcagaatcttcatcaaaaggagaagct 47052



 Score =  117 bits (59), Expect = 4e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                         
Query: 362   catctcgccgtggtggaatctctctcagtgatgttcccagatgtgtcagctgacttcatt 421
             ||||| || ||||| ||||||||||||  |||||||||||||||||| || |||||||||
Sbjct: 47104 catcttgctgtggtagaatctctctcaaagatgttcccagatgtgtctgccgacttcatt 47163

                                                                         
Query: 422   cttgaagcactgaaggccaatgaattcgatgcagtactcaccattgatatgctttccgat 481
              ||||||||||||||||| ||||||| ||| ||| |||||| || ||||||||| | |||
Sbjct: 47164 gttgaagcactgaaggcccatgaatttgatacagaactcacaatcgatatgcttgctgat 47223

                
Query: 482   ctg 484
             |||
Sbjct: 47224 ctg 47226
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  151 bits (76), Expect = 3e-33
 Identities = 199/240 (82%)
 Strand = Plus / Minus

                                                                           
Query: 93      caatggagcggtcttttaagttgaatccagatgccgctcctttcgtgcctgcctccaagt 152
               ||||||||||||||| | ||||||||||| ||||| |||| || |||||| || | | ||
Sbjct: 1865132 caatggagcggtcttctcagttgaatccaaatgccactccctttgtgcctcccccaaggt 1865073

                                                                           
Query: 153     ctccgttcgcggagagcttgaaaggaaagaaggaccctgagaagcaagtagatgagactg 212
               || |||| |  || |||||||  |||| ||||| | ||||||||||||||| |||  | |
Sbjct: 1865072 cttcgtttgaagaaagcttgagcggaaggaaggcctctgagaagcaagtaggtgattcag 1865013

                                                                           
Query: 213     aaaagagtgagaccgctgacaagtctgctgggtatgaactcccagagtccctttcttttg 272
               |||||  |||||| |||||||||||| |||  ||||| |||||||| ||||||||||| |
Sbjct: 1865012 aaaaggatgagactgctgacaagtcttctgaatatgagctcccagattccctttctttgg 1864953

                                                                           
Query: 273     atgactatgctgaaagcctaggaaagatcaacatctctaccgagtcatcatcaaaaggag 332
               | ||||||| |||||||||||||||| ||||||| ||| | || || |||||||||||||
Sbjct: 1864952 acgactatggtgaaagcctaggaaagctcaacatttctgcagaatcttcatcaaaaggag 1864893



 Score =  101 bits (51), Expect = 3e-18
 Identities = 105/123 (85%)
 Strand = Plus / Minus

                                                                           
Query: 362     catctcgccgtggtggaatctctctcagtgatgttcccagatgtgtcagctgacttcatt 421
               ||||| || ||||| |||||||||||   |||||||||||||||||| ||||||||||||
Sbjct: 1864839 catcttgctgtggtagaatctctctcgaagatgttcccagatgtgtctgctgacttcatt 1864780

                                                                           
Query: 422     cttgaagcactgaaggccaatgaattcgatgcagtactcaccattgatatgctttccgat 481
                |||||||||||| |||| |||| || ||| ||| ||| || |||||||||||| | |||
Sbjct: 1864779 gttgaagcactgagggcccatgattttgatacagaactaactattgatatgcttgctgat 1864720

                  
Query: 482     ctg 484
               |||
Sbjct: 1864719 ctg 1864717
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>dbj|AP005725.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0025H18
          Length = 176201

 Score =  151 bits (76), Expect = 3e-33
 Identities = 199/240 (82%)
 Strand = Plus / Minus

                                                                         
Query: 93    caatggagcggtcttttaagttgaatccagatgccgctcctttcgtgcctgcctccaagt 152
             ||||||||||||||| | ||||||||||| ||||| |||| || |||||| || | | ||
Sbjct: 14300 caatggagcggtcttctcagttgaatccaaatgccactccctttgtgcctcccccaaggt 14241

                                                                         
Query: 153   ctccgttcgcggagagcttgaaaggaaagaaggaccctgagaagcaagtagatgagactg 212
             || |||| |  || |||||||  |||| ||||| | ||||||||||||||| |||  | |
Sbjct: 14240 cttcgtttgaagaaagcttgagcggaaggaaggcctctgagaagcaagtaggtgattcag 14181

                                                                         
Query: 213   aaaagagtgagaccgctgacaagtctgctgggtatgaactcccagagtccctttcttttg 272
             |||||  |||||| |||||||||||| |||  ||||| |||||||| ||||||||||| |
Sbjct: 14180 aaaaggatgagactgctgacaagtcttctgaatatgagctcccagattccctttctttgg 14121

                                                                         
Query: 273   atgactatgctgaaagcctaggaaagatcaacatctctaccgagtcatcatcaaaaggag 332
             | ||||||| |||||||||||||||| ||||||| ||| | || || |||||||||||||
Sbjct: 14120 acgactatggtgaaagcctaggaaagctcaacatttctgcagaatcttcatcaaaaggag 14061



 Score =  101 bits (51), Expect = 3e-18
 Identities = 105/123 (85%)
 Strand = Plus / Minus

                                                                         
Query: 362   catctcgccgtggtggaatctctctcagtgatgttcccagatgtgtcagctgacttcatt 421
             ||||| || ||||| |||||||||||   |||||||||||||||||| ||||||||||||
Sbjct: 14007 catcttgctgtggtagaatctctctcgaagatgttcccagatgtgtctgctgacttcatt 13948

                                                                         
Query: 422   cttgaagcactgaaggccaatgaattcgatgcagtactcaccattgatatgctttccgat 481
              |||||||||||| |||| |||| || ||| ||| ||| || |||||||||||| | |||
Sbjct: 13947 gttgaagcactgagggcccatgattttgatacagaactaactattgatatgcttgctgat 13888

                
Query: 482   ctg 484
             |||
Sbjct: 13887 ctg 13885
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>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1227_D07
          Length = 118358

 Score =  151 bits (76), Expect = 3e-33
 Identities = 199/240 (82%)
 Strand = Plus / Minus

                                                                          
Query: 93     caatggagcggtcttttaagttgaatccagatgccgctcctttcgtgcctgcctccaagt 152
              ||||||||||||||| | ||||||||||| ||||| |||| || |||||| || | | ||
Sbjct: 103794 caatggagcggtcttctcagttgaatccaaatgccactccctttgtgcctcccccaaggt 103735

                                                                          
Query: 153    ctccgttcgcggagagcttgaaaggaaagaaggaccctgagaagcaagtagatgagactg 212
              || |||| |  || |||||||  |||| ||||| | ||||||||||||||| |||  | |
Sbjct: 103734 cttcgtttgaagaaagcttgagcggaaggaaggcctctgagaagcaagtaggtgattcag 103675

                                                                          
Query: 213    aaaagagtgagaccgctgacaagtctgctgggtatgaactcccagagtccctttcttttg 272
              |||||  |||||| |||||||||||| |||  ||||| |||||||| ||||||||||| |
Sbjct: 103674 aaaaggatgagactgctgacaagtcttctgaatatgagctcccagattccctttctttgg 103615

                                                                          
Query: 273    atgactatgctgaaagcctaggaaagatcaacatctctaccgagtcatcatcaaaaggag 332
              | ||||||| |||||||||||||||| ||||||| ||| | || || |||||||||||||
Sbjct: 103614 acgactatggtgaaagcctaggaaagctcaacatttctgcagaatcttcatcaaaaggag 103555



 Score =  101 bits (51), Expect = 3e-18
 Identities = 105/123 (85%)
 Strand = Plus / Minus

                                                                          
Query: 362    catctcgccgtggtggaatctctctcagtgatgttcccagatgtgtcagctgacttcatt 421
              ||||| || ||||| |||||||||||   |||||||||||||||||| ||||||||||||
Sbjct: 103501 catcttgctgtggtagaatctctctcgaagatgttcccagatgtgtctgctgacttcatt 103442

                                                                          
Query: 422    cttgaagcactgaaggccaatgaattcgatgcagtactcaccattgatatgctttccgat 481
               |||||||||||| |||| |||| || ||| ||| ||| || |||||||||||| | |||
Sbjct: 103441 gttgaagcactgagggcccatgattttgatacagaactaactattgatatgcttgctgat 103382

                 
Query: 482    ctg 484
              |||
Sbjct: 103381 ctg 103379
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>ref|XM_450124.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 444

 Score =  147 bits (74), Expect = 5e-32
 Identities = 197/238 (82%)
 Strand = Plus / Plus

                                                                       
Query: 95  atggagcggtcttttaagttgaatccagatgccgctcctttcgtgcctgcctccaagtct 154
           ||||||||||||| | ||||||||||| ||||| |||| || |||||| || | | ||||
Sbjct: 1   atggagcggtcttctcagttgaatccaaatgccactccctttgtgcctcccccaaggtct 60

                                                                       
Query: 155 ccgttcgcggagagcttgaaaggaaagaaggaccctgagaagcaagtagatgagactgaa 214
            |||| |  || |||||||  |||| ||||| | ||||||||||||||| |||  | |||
Sbjct: 61  tcgtttgaagaaagcttgagcggaaggaaggcctctgagaagcaagtaggtgattcagaa 120

                                                                       
Query: 215 aagagtgagaccgctgacaagtctgctgggtatgaactcccagagtccctttcttttgat 274
           |||  |||||| |||||||||||| |||  ||||| |||||||| ||||||||||| || 
Sbjct: 121 aaggatgagactgctgacaagtcttctgaatatgagctcccagattccctttctttggac 180

                                                                     
Query: 275 gactatgctgaaagcctaggaaagatcaacatctctaccgagtcatcatcaaaaggag 332
           ||||||| |||||||||||||||| ||||||| ||| | || || |||||||||||||
Sbjct: 181 gactatggtgaaagcctaggaaagctcaacatttctgcagaatcttcatcaaaaggag 238



 Score =  101 bits (51), Expect = 3e-18
 Identities = 105/123 (85%)
 Strand = Plus / Plus

                                                                       
Query: 362 catctcgccgtggtggaatctctctcagtgatgttcccagatgtgtcagctgacttcatt 421
           ||||| || ||||| |||||||||||   |||||||||||||||||| ||||||||||||
Sbjct: 292 catcttgctgtggtagaatctctctcgaagatgttcccagatgtgtctgctgacttcatt 351

                                                                       
Query: 422 cttgaagcactgaaggccaatgaattcgatgcagtactcaccattgatatgctttccgat 481
            |||||||||||| |||| |||| || ||| ||| ||| || |||||||||||| | |||
Sbjct: 352 gttgaagcactgagggcccatgattttgatacagaactaactattgatatgcttgctgat 411

              
Query: 482 ctg 484
           |||
Sbjct: 412 ctg 414
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>gb|AC025448.6| Homo sapiens chromosome 5 clone CTD-2113L7, complete sequence
          Length = 164190

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   gacaagtctgctgggtatgaa 250
             |||||||||||||||||||||
Sbjct: 66240 gacaagtctgctgggtatgaa 66220
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>dbj|AP000787.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-712B9, complete
              sequence
          Length = 173441

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 176    ggaaagaaggaccctgagaagcaag 200
              |||||||||||||||||| ||||||
Sbjct: 103930 ggaaagaaggaccctgagtagcaag 103906
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>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     ctctaccgagtcatcatcaa 326
               ||||||||||||||||||||
Sbjct: 1222679 ctctaccgagtcatcatcaa 1222660
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>gb|AC167138.6| Mus musculus chromosome 15, clone RP24-358O3, complete sequence
          Length = 190097

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 577    cagctacattctggttcaag 596
              ||||||||||||||||||||
Sbjct: 123259 cagctacattctggttcaag 123240
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>ref|XM_471744.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1611

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 580 ctacattctggttcaagcaa 599
           ||||||||||||||||||||
Sbjct: 841 ctacattctggttcaagcaa 860
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>gb|AC119834.12| Mus musculus chromosome 5, clone RP24-383P24, complete sequence
          Length = 223764

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  atcatcaaaaggagaagctg 338
            ||||||||||||||||||||
Sbjct: 4111 atcatcaaaaggagaagctg 4092
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    tagccatctcgccgtggtgg 377
              ||||||||||||||||||||
Sbjct: 122998 tagccatctcgccgtggtgg 123017
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>gb|AC147038.2| Pan troglodytes BAC clone RP43-112D23 from 7, complete sequence
          Length = 192615

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   tccctttcttttgatgacta 279
             ||||||||||||||||||||
Sbjct: 31333 tccctttcttttgatgacta 31352
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>gb|AC124475.3| Mus musculus BAC clone RP24-92F8 from chromosome 8, complete sequence
          Length = 212858

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 357   gtagccatctcgccgtggtggaatctct 384
             ||||||||||||||  ||||||||||||
Sbjct: 92166 gtagccatctcgcctcggtggaatctct 92139
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>gb|L11665.1|MTVNGHYPER Obuda pepper virus RNA
          Length = 6506

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  gtagatgagactgaaaagag 219
            ||||||||||||||||||||
Sbjct: 2934 gtagatgagactgaaaagag 2953
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 358      tagccatctcgccgtggtgg 377
                ||||||||||||||||||||
Sbjct: 21430087 tagccatctcgccgtggtgg 21430106
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>gb|BC030398.1| Mus musculus RIKEN cDNA E230013L22 gene, mRNA (cDNA clone
            IMAGE:4189084), with apparent retained intron
          Length = 1862

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 357  gtagccatctcgccgtggtggaatctct 384
            ||||||||||||||  ||||||||||||
Sbjct: 1333 gtagccatctcgcctcggtggaatctct 1306
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>emb|CR392366.4| Zebrafish DNA sequence from clone DKEY-51D17 in linkage group 9, complete
              sequence
          Length = 125898

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 406    gtcagctgacttcattcttgaagc 429
              ||||||||||||||||||| ||||
Sbjct: 120974 gtcagctgacttcattcttcaagc 120997
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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
             complete sequence
          Length = 174430

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   ctacattctggttcaagcaa 599
             ||||||||||||||||||||
Sbjct: 80541 ctacattctggttcaagcaa 80560
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>gb|AF228661.4| Homo sapiens chromosome 8 clone CTD-3015B2 map q11-q13, complete sequence
          Length = 140374

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    atgtgtcagctgacttcatt 421
              ||||||||||||||||||||
Sbjct: 134234 atgtgtcagctgacttcatt 134253
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>gb|AF149786.3| Homo sapiens chromosome 8 clone GS1-190e2 map q11-q13, complete
             sequence
          Length = 60767

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   atgtgtcagctgacttcatt 421
             ||||||||||||||||||||
Sbjct: 48892 atgtgtcagctgacttcatt 48911
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>gb|AC104939.7| Homo sapiens chromosome 8, clone CTD-3015B2, complete sequence
          Length = 140375

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    atgtgtcagctgacttcatt 421
              ||||||||||||||||||||
Sbjct: 134008 atgtgtcagctgacttcatt 134027
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>gb|AC104232.5| Homo sapiens chromosome 8, clone RP11-1D12, complete sequence
          Length = 148933

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    atgtgtcagctgacttcatt 421
              ||||||||||||||||||||
Sbjct: 143145 atgtgtcagctgacttcatt 143126
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>gb|AC093182.3| Homo sapiens chromosome 7 clone RP11-19B3, complete sequence
          Length = 155164

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   tccctttcttttgatgacta 279
             ||||||||||||||||||||
Sbjct: 49731 tccctttcttttgatgacta 49712
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>emb|BX005126.10| Zebrafish DNA sequence from clone CH211-129O9 in linkage group 5,
             complete sequence
          Length = 160487

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   caaaaggagaagctgctgag 343
             ||||||||||||||||||||
Sbjct: 22535 caaaaggagaagctgctgag 22516
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>gb|AC158994.4| Mus musculus BAC clone RP24-79P8 from chromosome 5, complete sequence
          Length = 201330

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   atcatcaaaaggagaagctg 338
             ||||||||||||||||||||
Sbjct: 35115 atcatcaaaaggagaagctg 35134
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>emb|BX510647.10| Zebrafish DNA sequence from clone CH211-87N9 in linkage group 5,
             complete sequence
          Length = 198695

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   caaaaggagaagctgctgag 343
             ||||||||||||||||||||
Sbjct: 45427 caaaaggagaagctgctgag 45446
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>dbj|AK054035.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
            full-length enriched library, clone:E230013L22
            product:unclassifiable, full insert sequence
          Length = 1857

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 357  gtagccatctcgccgtggtggaatctct 384
            ||||||||||||||  ||||||||||||
Sbjct: 1356 gtagccatctcgcctcggtggaatctct 1329
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 580      ctacattctggttcaagcaa 599
                ||||||||||||||||||||
Sbjct: 13966661 ctacattctggttcaagcaa 13966680
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 358      tagccatctcgccgtggtgg 377
                ||||||||||||||||||||
Sbjct: 21423116 tagccatctcgccgtggtgg 21423135
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>dbj|AB222209.1| Tetrahymena thermophila MYO4 mRNA for myosin 4, complete cds
          Length = 5391

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 319  atcatcaaaaggagaagctg 338
            ||||||||||||||||||||
Sbjct: 3018 atcatcaaaaggagaagctg 3037
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>gb|AC009518.9| Homo sapiens chromosome 7 clone RP11-193I17, complete sequence
          Length = 176209

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   tccctttcttttgatgacta 279
             ||||||||||||||||||||
Sbjct: 30820 tccctttcttttgatgacta 30839
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>gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromosome 7, complete
             sequence
          Length = 222089

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   tccctttcttttgatgacta 279
             ||||||||||||||||||||
Sbjct: 48974 tccctttcttttgatgacta 48955
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>gb|AC154742.2| Mus musculus BAC clone RP24-392F16 from 13, complete sequence
          Length = 129749

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 167    agcttgaaaggaaagaaggaccct 190
              ||||| ||||||||||||||||||
Sbjct: 118715 agcttcaaaggaaagaaggaccct 118692
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>dbj|AP003082.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-746C14, complete
             sequence
          Length = 189635

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 587   ctggttcaagcaaatcttct 606
             ||||||||||||||||||||
Sbjct: 67174 ctggttcaagcaaatcttct 67193
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>dbj|D13438.1|MTVGRNA Obuda pepper virus genomic RNA for 130K protein, 180K protein, 30K
            protein and coat protein, complete cds
          Length = 6507

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  gtagatgagactgaaaagag 219
            ||||||||||||||||||||
Sbjct: 2934 gtagatgagactgaaaagag 2953
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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 593    caagcaaatcttcttcaccatcaa 616
              |||| |||||||||||||||||||
Sbjct: 357448 caagtaaatcttcttcaccatcaa 357471
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>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     ctctaccgagtcatcatcaa 326
               ||||||||||||||||||||
Sbjct: 1216703 ctctaccgagtcatcatcaa 1216684


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,348,117
Number of Sequences: 3902068
Number of extensions: 5348117
Number of successful extensions: 107984
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107769
Number of HSP's gapped (non-prelim): 211
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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