ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9m17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
2dbj|AK107282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
3dbj|AK101317.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
4emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chr... 44 0.53
5dbj|AP006255.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 44 0.53
6dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 44 0.53
7dbj|AB020872.1| Homo sapiens genomic DNA of 9q32 anti-oncogene o... 44 0.53
8gb|AC159994.7| Mus musculus chromosome 7, clone RP23-368F23, com... 42 2.1
9ref|XM_949746.1| Theileria annulata strain Ankara hypothetical p... 42 2.1
10gb|AC012391.10| Homo sapiens chromosome 10 clone RP11-162A23, co... 42 2.1
11gb|L21974.1|ACSCSRC Avian sarcoma virus proviral c-src gene, com... 40 8.2
12gb|AC165409.3| Mus musculus chromosome 18, clone RP23-90F15, com... 40 8.2
13gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosom... 40 8.2
14ref|XM_386435.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 8.2
15gb|AC114821.4| Mus musculus BAC clone RP23-72K1 from chromosome ... 40 8.2
16emb|AL136366.24| Human DNA sequence from clone RP11-413C16 on ch... 40 8.2
17gb|AC124733.4| Mus musculus BAC clone RP23-306C18 from 12, compl... 40 8.2
18ref|XM_774763.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 8.2
19gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, comple... 40 8.2
20gb|AC103933.7| Mus musculus chromosome 18, clone RP23-317G9, com... 40 8.2
21emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on ch... 40 8.2
22emb|AL132868.24|HSA262P20 Human DNA sequence from clone RP11-262... 40 8.2
23emb|X52822.1|MAVSCR M.auratus H-19 proviral sequence (LTR,v-3scr... 40 8.2
24emb|X84074.1|RSVPP62V8 Rous sarcoma virus pp62v-src gene 40 8.2
25emb|X84073.1|RSVSRCHM Rous sarcoma virus srcHM gene 40 8.2
26emb|X68524.1|RSVSEQ Rous Sarcoma Virus (duck adapted) sequence o... 40 8.2
27emb|X51863.1|ASVPR225T Avian Sarcoma Virus PR2257T 40 8.2
28emb|X51861.1|RSVPRSRC Duck adapted Rous sarcoma virus (Pr-RSV-C)... 40 8.2
29emb|X15345.1|RERSVH19 Hamster H-19 proviral DNA (LTR- v-src -LTR) 40 8.2
30emb|V01197.1|RERSV6 Rous sarcoma virus genome, strain Prague C (... 40 8.2
31emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 8.2
32dbj|AK128153.1| Homo sapiens cDNA FLJ46276 fis, clone TESTI4029676 40 8.2
33dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 8.2
34gb|J02342.1|ALRCG Rous sarcoma virus - Prague C, complete genome 40 8.2
35gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 8.2
36gb|AF033808.1|AF033808 Rous sarcoma virus, complete genome 40 8.2
37emb|V00402.1|GGCSRC Gallus gallus gene c-src producing protein p... 40 8.2
38gb|AC118137.3| Homo sapiens BAC clone RP11-427I22 from 4, comple... 40 8.2
39gb|AC105448.5| Homo sapiens BAC clone RP11-1197E19 from 4, compl... 40 8.2
40gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 8.2
41emb|V01169.1|REASV5 Avian sarcoma virus src gene and part of the... 40 8.2
42emb|X14718.1|RERSVSRC Rous sarcome virus Pra src gene (pp60) 40 8.2
43gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 8.2
44gb|L29199.1|ALRDA2 Rous sarcoma virus (Schmidt-Ruppin A) env-src... 40 8.2
45emb|AL161851.4|CNS01RHM Human chromosome 14 DNA sequence BAC R-1... 40 8.2
46gb|AC115692.6| Mus musculus chromosome 18, clone RP23-463G11, co... 40 8.2
47gb|AF052428.1| Rous sarcoma virus strain Schmidt-Ruppin B, compl... 40 8.2
48gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complet... 40 8.2
49emb|Z68276.1|HSL190B4 Human DNA sequence from clone LA04NC01-190... 40 8.2
50gb|M21526.1|ALRSRCAC Rous sarcoma virus defective mutant PR2257 ... 40 8.2
51gb|M84475.1|ALRPP60A Rous sarcoma virus phosphoprotein p60 (src)... 40 8.2
52gb|M11753.1|ALRGSRCA Rous sarcoma virus src gene, complete cds 40 8.2 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 14       actatgtcaaaaagcgccctaag 36
                |||||||||||||||||||||||
Sbjct: 18860997 actatgtcaaaaagcgccctaag 18860975



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                    
Query: 227      aaccatgtgtctgatgggccggaaaccaagttagagggtgctcagaatggag 278
                |||||||| |||||||  ||  ||||||||||||||| | |||| |||||||
Sbjct: 18859666 aaccatgtttctgatgaaccaaaaaccaagttagaggatactcaaaatggag 18859615
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>dbj|AK107282.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B01, full
            insert sequence
          Length = 1312

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 14   actatgtcaaaaagcgccctaag 36
            |||||||||||||||||||||||
Sbjct: 1137 actatgtcaaaaagcgccctaag 1159
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>dbj|AK101317.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D09, full
            insert sequence
          Length = 1751

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 14   actatgtcaaaaagcgccctaag 36
            |||||||||||||||||||||||
Sbjct: 1059 actatgtcaaaaagcgccctaag 1081



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 227  aaccatgtgtctgatgggccggaaaccaagttagagggtgctcagaatggag 278
            |||||||| |||||||  ||  ||||||||||||||| | |||| |||||||
Sbjct: 1295 aaccatgtttctgatgaaccaaaaaccaagttagaggatactcaaaatggag 1346
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>emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chromosome 9, complete
              sequence
          Length = 175726

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 583    ccttttattttctcctttgtaa 604
              ||||||||||||||||||||||
Sbjct: 116746 ccttttattttctcctttgtaa 116725
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>dbj|AP006255.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-361G14, complete
              sequence
          Length = 189176

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 583    ccttttattttctcctttgtaa 604
              ||||||||||||||||||||||
Sbjct: 145388 ccttttattttctcctttgtaa 145367
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>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete
             sequence
          Length = 165755

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 583   ccttttattttctcctttgtaa 604
             ||||||||||||||||||||||
Sbjct: 18814 ccttttattttctcctttgtaa 18793
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>dbj|AB020872.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 4/10
          Length = 100000

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 583   ccttttattttctcctttgtaa 604
             ||||||||||||||||||||||
Sbjct: 66513 ccttttattttctcctttgtaa 66492
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>gb|AC159994.7| Mus musculus chromosome 7, clone RP23-368F23, complete sequence
          Length = 181238

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 298   aaaagctgcagtctgacgtacccag 322
             |||||||||||||||||| ||||||
Sbjct: 66167 aaaagctgcagtctgacgcacccag 66143
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>ref|XM_949746.1| Theileria annulata strain Ankara hypothetical protein (TA05330)
           partial mRNA
          Length = 1578

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 442 tgaggtcgacaaaaaatccga 462
           |||||||||||||||||||||
Sbjct: 243 tgaggtcgacaaaaaatccga 263
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>gb|AC012391.10| Homo sapiens chromosome 10 clone RP11-162A23, complete sequence
          Length = 181948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 298   aaaagctgcagtctgacgtacccag 322
             |||||||||||||||||| ||||||
Sbjct: 59485 aaaagctgcagtctgacgcacccag 59461
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>gb|L21974.1|ACSCSRC Avian sarcoma virus proviral c-src gene, complete cds, and env gene,
            untranslated region
          Length = 5188

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1677 tgaaccagcttctcatgccg 1658
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>gb|AC165409.3| Mus musculus chromosome 18, clone RP23-90F15, complete sequence
          Length = 198735

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   cgatgatttcctcgtctcta 352
             ||||||||||||||||||||
Sbjct: 55070 cgatgatttcctcgtctcta 55051
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>gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosome 12, complete sequence
          Length = 199956

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    ggaaagcagaaggctctgag 205
              ||||||||||||||||||||
Sbjct: 110471 ggaaagcagaaggctctgag 110452
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>ref|XM_386435.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06259.1)
            partial mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 452  aaaaaatccgacgatttgggacag 475
            |||||| |||||||||||||||||
Sbjct: 1357 aaaaaaaccgacgatttgggacag 1380
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>gb|AC114821.4| Mus musculus BAC clone RP23-72K1 from chromosome 1, complete sequence
          Length = 197978

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   cttttattttctcctttgta 603
             ||||||||||||||||||||
Sbjct: 41596 cttttattttctcctttgta 41577
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>emb|AL136366.24| Human DNA sequence from clone RP11-413C16 on chromosome 9p22.3-23
             Contains the 5' end of the NFIB gene for nuclear factor
             I/B (NFIB2, NRFIB3, NFI-RED), the 5' end of a novel gene
             and 2 CpG islands, complete sequence
          Length = 120282

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 546   tgcttatgtaggagaccttg 565
             ||||||||||||||||||||
Sbjct: 62047 tgcttatgtaggagaccttg 62028
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>gb|AC124733.4| Mus musculus BAC clone RP23-306C18 from 12, complete sequence
          Length = 206837

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    ggaaagcagaaggctctgag 205
              ||||||||||||||||||||
Sbjct: 175282 ggaaagcagaaggctctgag 175301
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>ref|XM_774763.1| Giardia lamblia ATCC 50803 hypothetical protein
            (GLP_170_138692_134292) partial mRNA
          Length = 4401

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  tggatcggcagatgtgaagc 173
            ||||||||||||||||||||
Sbjct: 2369 tggatcggcagatgtgaagc 2350
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>gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, complete sequence
          Length = 70276

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 577   taggtgccttttattttctccttt 600
             ||||||||| ||||||||||||||
Sbjct: 30052 taggtgcctcttattttctccttt 30075
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>gb|AC103933.7| Mus musculus chromosome 18, clone RP23-317G9, complete sequence
          Length = 198626

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   cgatgatttcctcgtctcta 352
             ||||||||||||||||||||
Sbjct: 18081 cgatgatttcctcgtctcta 18062
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>emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on chromosome 9, complete
             sequence
          Length = 100719

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   gcagaaggctctgagccagg 210
             ||||||||||||||||||||
Sbjct: 23172 gcagaaggctctgagccagg 23191
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>emb|AL132868.24|HSA262P20 Human DNA sequence from clone RP11-262P20 on chromosome 4, complete
              sequence
          Length = 193444

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     ctcttcaaccagtggaagtt 91
              ||||||||||||||||||||
Sbjct: 143085 ctcttcaaccagtggaagtt 143104
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>emb|X52822.1|MAVSCR M.auratus H-19 proviral sequence (LTR,v-3scr1,LTR)
          Length = 3775

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 2212 tgaaccagcttctcatgccg 2193
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>emb|X84074.1|RSVPP62V8 Rous sarcoma virus pp62v-src gene
          Length = 1638

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1031 tgaaccagcttctcatgccg 1012
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>emb|X84073.1|RSVSRCHM Rous sarcoma virus srcHM gene
          Length = 1641

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1031 tgaaccagcttctcatgccg 1012
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>emb|X68524.1|RSVSEQ Rous Sarcoma Virus (duck adapted) sequence of gag, pol, env and src
            genes
          Length = 9312

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 8099 tgaaccagcttctcatgccg 8080
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>emb|X51863.1|ASVPR225T Avian Sarcoma Virus PR2257T
          Length = 4503

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1677 tgaaccagcttctcatgccg 1658
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>emb|X51861.1|RSVPRSRC Duck adapted Rous sarcoma virus (Pr-RSV-C) src gene and 3'-LTR
          Length = 2545

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1252 tgaaccagcttctcatgccg 1233
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>emb|X15345.1|RERSVH19 Hamster H-19 proviral DNA (LTR- v-src -LTR)
          Length = 3123

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1801 tgaaccagcttctcatgccg 1782
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>emb|V01197.1|RERSV6 Rous sarcoma virus genome, strain Prague C (Pr-C)
          Length = 9312

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 8099 tgaaccagcttctcatgccg 8080
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>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 7/20
          Length = 233050

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    cgcgacgccgtaatggcctt 414
              ||||||||||||||||||||
Sbjct: 158702 cgcgacgccgtaatggcctt 158683
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>dbj|AK128153.1| Homo sapiens cDNA FLJ46276 fis, clone TESTI4029676
          Length = 2907

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 191 gcagaaggctctgagccagg 210
           ||||||||||||||||||||
Sbjct: 22  gcagaaggctctgagccagg 3
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 583    ccttttattttctcctttgt 602
              ||||||||||||||||||||
Sbjct: 492104 ccttttattttctcctttgt 492123
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>gb|J02342.1|ALRCG Rous sarcoma virus - Prague C, complete genome
          Length = 9625

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 8332 tgaaccagcttctcatgccg 8313
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 510    gtcgaaccctttcggatcatatat 533
              ||||||||||| ||||||||||||
Sbjct: 749671 gtcgaacccttccggatcatatat 749694
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>gb|AF033808.1|AF033808 Rous sarcoma virus, complete genome
          Length = 9392

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 8099 tgaaccagcttctcatgccg 8080
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>emb|V00402.1|GGCSRC Gallus gallus gene c-src producing protein pp60-c-src. This gene is
            homologous to the rous sarcoma virus gene v-src
          Length = 1759

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1082 tgaaccagcttctcatgccg 1063
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>gb|AC118137.3| Homo sapiens BAC clone RP11-427I22 from 4, complete sequence
          Length = 43619

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 548  cttatgtaggagaccttgtgatgc 571
            ||||||||||||||| ||||||||
Sbjct: 5537 cttatgtaggagaccctgtgatgc 5514
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>gb|AC105448.5| Homo sapiens BAC clone RP11-1197E19 from 4, complete sequence
          Length = 135594

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     ctcttcaaccagtggaagtt 91
              ||||||||||||||||||||
Sbjct: 117810 ctcttcaaccagtggaagtt 117791
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 395     cgcgacgccgtaatggcctt 414
               ||||||||||||||||||||
Sbjct: 1617289 cgcgacgccgtaatggcctt 1617270
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>emb|V01169.1|REASV5 Avian sarcoma virus src gene and part of the env gene
          Length = 3107

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 2093 tgaaccagcttctcatgccg 2074
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>emb|X14718.1|RERSVSRC Rous sarcome virus Pra src gene (pp60)
          Length = 1653

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1046 tgaaccagcttctcatgccg 1027
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     cgcgacgccgtaatggcctt 414
               ||||||||||||||||||||
Sbjct: 1249429 cgcgacgccgtaatggcctt 1249448
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>gb|L29199.1|ALRDA2 Rous sarcoma virus (Schmidt-Ruppin A) env-src-3'LTR
          Length = 3256

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 2093 tgaaccagcttctcatgccg 2074
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>emb|AL161851.4|CNS01RHM Human chromosome 14 DNA sequence BAC R-1078I14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 187732

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    tcttcaaccagtggaagtta 92
             ||||||||||||||||||||
Sbjct: 63347 tcttcaaccagtggaagtta 63366
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>gb|AC115692.6| Mus musculus chromosome 18, clone RP23-463G11, complete sequence
          Length = 227631

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   cgatgatttcctcgtctcta 352
             ||||||||||||||||||||
Sbjct: 31526 cgatgatttcctcgtctcta 31545
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>gb|AF052428.1| Rous sarcoma virus strain Schmidt-Ruppin B, complete genome
          Length = 9396

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 8297 tgaaccagcttctcatgccg 8278
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>gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complete sequence
          Length = 217538

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 584    cttttattttctcctttgta 603
              ||||||||||||||||||||
Sbjct: 162522 cttttattttctcctttgta 162503
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>emb|Z68276.1|HSL190B4 Human DNA sequence from clone LA04NC01-190B4 on chromosome 4,
            complete sequence
          Length = 29748

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   ctcttcaaccagtggaagtt 91
            ||||||||||||||||||||
Sbjct: 7898 ctcttcaaccagtggaagtt 7917
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>gb|M21526.1|ALRSRCAC Rous sarcoma virus defective mutant PR2257 src gene encoding p66-src
            protein, complete cds
          Length = 4413

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1677 tgaaccagcttctcatgccg 1658
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>gb|M84475.1|ALRPP60A Rous sarcoma virus phosphoprotein p60 (src) gene, complete cds and
            reverse transcriptase (pol) gene, 3' end
          Length = 2241

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1250 tgaaccagcttctcatgccg 1231
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>gb|M11753.1|ALRGSRCA Rous sarcoma virus src gene, complete cds
          Length = 1629

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tgaaccagcttctcatgccg 143
            ||||||||||||||||||||
Sbjct: 1001 tgaaccagcttctcatgccg 982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,668,339
Number of Sequences: 3902068
Number of extensions: 4668339
Number of successful extensions: 83872
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83719
Number of HSP's gapped (non-prelim): 153
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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