Clone Name | bags9m05 |
---|---|
Clone Library Name | barley_pub |
>gb|AF244674.1|AF244674 Zea mays glutathione S-transferase GST 9 mRNA, complete cds Length = 999 Score = 295 bits (149), Expect = 5e-77 Identities = 311/365 (85%) Strand = Plus / Plus Query: 2 atggcatcaggcttgcaagtgtttggccagccagcatctaccgatgttgccagggttctg 61 |||||| ||||| ||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct: 70 atggcagcaggcctgcaagtgtttggccagccggcgtctactgatgttgccagggttctg 129 Query: 62 acatgcctctttgagaagaatttggagttcgatcttgtccgcattgacacattcaagagg 121 || ||||| ||||||||||| |||||||| || |||||||||||||| ||||| |||| Sbjct: 130 acgtgcctgtttgagaagaaattggagtttgagcttgtccgcattgatacatttaagaca 189 Query: 122 gagcacaggcttcctgagttcattaggctgcgggatccaagtggacaagtgacattcaag 181 | |||||||||||||||||||| |||||||||||||| | ||| |||||||| |||||| Sbjct: 190 catcacaggcttcctgagttcatcaggctgcgggatccgaatgggcaagtgaccttcaag 249 Query: 182 catggtgacaagactcttgttgatccaagggctatttgccggtacctctgtacccagttc 241 ||||| ||||| || ||||||||| |||||| || ||||||||| | || | |||||| Sbjct: 250 catggcgacaaaacccttgttgattcaagggacatatgccggtacgtttgcaaccagttt 309 Query: 242 ccaaaccagggaaacaggaacctctatgggactggttctctggaacgggcctcaatagaa 301 ||||| | ||||||| || ||||||||| ||||| |||| |||||||| || |||||| Sbjct: 310 ccaaattacggaaacaagagcctctatggatctggtgctctagaacgggcatcgatagaa 369 Query: 302 cagtggctgcaagcagaggctcagaacttcaaccctcccagctcggccctcgtgtttcag 361 |||||||| || ||||| || |||||||| |||||||||||| || || ||||||||| Sbjct: 370 cagtggctccaggcagaagcccagaactttggccctcccagctctgcgcttgtgtttcag 429 Query: 362 ctggc 366 ||||| Sbjct: 430 ctggc 434
>gb|AY111697.1| Zea mays CL1117_-1 mRNA sequence Length = 977 Score = 295 bits (149), Expect = 5e-77 Identities = 311/365 (85%) Strand = Plus / Plus Query: 2 atggcatcaggcttgcaagtgtttggccagccagcatctaccgatgttgccagggttctg 61 |||||| ||||| ||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct: 70 atggcagcaggcctgcaagtgtttggccagccggcgtctactgatgttgccagggttctg 129 Query: 62 acatgcctctttgagaagaatttggagttcgatcttgtccgcattgacacattcaagagg 121 || ||||| ||||||||||| |||||||| || |||||||||||||| ||||| |||| Sbjct: 130 acgtgcctgtttgagaagaaattggagtttgagcttgtccgcattgatacatttaagaca 189 Query: 122 gagcacaggcttcctgagttcattaggctgcgggatccaagtggacaagtgacattcaag 181 | |||||||||||||||||||| |||||||||||||| | ||| |||||||| |||||| Sbjct: 190 catcacaggcttcctgagttcatcaggctgcgggatccgaatgggcaagtgaccttcaag 249 Query: 182 catggtgacaagactcttgttgatccaagggctatttgccggtacctctgtacccagttc 241 ||||| ||||| || ||||||||| |||||| || ||||||||| | || | |||||| Sbjct: 250 catggcgacaaaacccttgttgattcaagggacatatgccggtacgtttgcaaccagttt 309 Query: 242 ccaaaccagggaaacaggaacctctatgggactggttctctggaacgggcctcaatagaa 301 ||||| | ||||||| || ||||||||| ||||| |||| |||||||| || |||||| Sbjct: 310 ccaaattacggaaacaagagcctctatggatctggtgctctagaacgggcatcgatagaa 369 Query: 302 cagtggctgcaagcagaggctcagaacttcaaccctcccagctcggccctcgtgtttcag 361 |||||||| || ||||| || |||||||| |||||||||||| || || ||||||||| Sbjct: 370 cagtggctccaggcagaagcccagaactttggccctcccagctctgcgcttgtgtttcag 429 Query: 362 ctggc 366 ||||| Sbjct: 430 ctggc 434
>ref|XM_470192.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 531 Score = 230 bits (116), Expect = 3e-57 Identities = 167/184 (90%) Strand = Plus / Plus Query: 9 caggcttgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcc 68 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 8 caggcttgcaagtgtttggccagccagcatctactgatgttgccagggtcctgacatgcc 67 Query: 69 tctttgagaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcaca 128 ||||||||||| || |||| || || |||||| ||||||| ||||||||||| ||||||| Sbjct: 68 tctttgagaaggatctggaatttgaacttgtctgcattgatacattcaagagagagcaca 127 Query: 129 ggcttcctgagttcattaggctgcgggatccaagtggacaagtgacattcaagcatggtg 188 ||||||||||||||||| |||||||||||| | ||| ||||||||||| || ||||||| Sbjct: 128 agcttcctgagttcattaagctgcgggatcctaatgggcaagtgacatttaaacatggtg 187 Query: 189 acaa 192 |||| Sbjct: 188 acaa 191
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 196 bits (99), Expect = 4e-47 Identities = 135/147 (91%) Strand = Plus / Minus Query: 9 caggcttgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcc 68 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 1933835 caggcttgcaagtgtttggccagccagcatctactgatgttgccagggtcctgacatgcc 1933776 Query: 69 tctttgagaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcaca 128 ||||||||||| || |||| || || |||||| ||||||| ||||||||||| ||||||| Sbjct: 1933775 tctttgagaaggatctggaatttgaacttgtctgcattgatacattcaagagagagcaca 1933716 Query: 129 ggcttcctgagttcattaggctgcggg 155 ||||||||||||||||| |||||||| Sbjct: 1933715 agcttcctgagttcattaagctgcggg 1933689 Score = 117 bits (59), Expect = 3e-23 Identities = 142/169 (84%), Gaps = 3/169 (1%) Strand = Plus / Minus Query: 207 caagggctatttgccggtacctctgtacccagttcccaaaccagggaaacaggaacctct 266 |||||||||| ||||||||| | ||||| ||||| ||| | |||||| | || ||| | Sbjct: 1933457 caagggctatatgccggtacgtttgtactcagtttccaga---gggaaataagacccttt 1933401 Query: 267 atgggactggttctctggaacgggcctcaatagaacagtggctgcaagcagaggctcaga 326 |||| || || ||||| |||||||| ||||||||||||||||| |||||||| ||||| | Sbjct: 1933400 atggaacgggatctctagaacgggcatcaatagaacagtggcttcaagcagaagctcaaa 1933341 Query: 327 acttcaaccctcccagctcggccctcgtgtttcagctggcatttgctcc 375 | |||| ||||||||||||||||||||| || || || ||||||||||| Sbjct: 1933340 atttcagccctcccagctcggccctcgtcttccatctcgcatttgctcc 1933292 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 170 gtgacattcaagcatggtgacaagactcttgttg 203 ||||| ||||||||||| |||||||||||||||| Sbjct: 1929601 gtgactttcaagcatggcgacaagactcttgttg 1929568
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 196 bits (99), Expect = 4e-47 Identities = 135/147 (91%) Strand = Plus / Plus Query: 9 caggcttgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcc 68 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 41576 caggcttgcaagtgtttggccagccagcatctactgatgttgccagggtcctgacatgcc 41635 Query: 69 tctttgagaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcaca 128 ||||||||||| || |||| || || |||||| ||||||| ||||||||||| ||||||| Sbjct: 41636 tctttgagaaggatctggaatttgaacttgtctgcattgatacattcaagagagagcaca 41695 Query: 129 ggcttcctgagttcattaggctgcggg 155 ||||||||||||||||| |||||||| Sbjct: 41696 agcttcctgagttcattaagctgcggg 41722 Score = 117 bits (59), Expect = 3e-23 Identities = 142/169 (84%), Gaps = 3/169 (1%) Strand = Plus / Plus Query: 207 caagggctatttgccggtacctctgtacccagttcccaaaccagggaaacaggaacctct 266 |||||||||| ||||||||| | ||||| ||||| ||| | |||||| | || ||| | Sbjct: 41954 caagggctatatgccggtacgtttgtactcagtttccaga---gggaaataagacccttt 42010 Query: 267 atgggactggttctctggaacgggcctcaatagaacagtggctgcaagcagaggctcaga 326 |||| || || ||||| |||||||| ||||||||||||||||| |||||||| ||||| | Sbjct: 42011 atggaacgggatctctagaacgggcatcaatagaacagtggcttcaagcagaagctcaaa 42070 Query: 327 acttcaaccctcccagctcggccctcgtgtttcagctggcatttgctcc 375 | |||| ||||||||||||||||||||| || || || ||||||||||| Sbjct: 42071 atttcagccctcccagctcggccctcgtcttccatctcgcatttgctcc 42119 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 170 gtgacattcaagcatggtgacaagactcttgttg 203 ||||| ||||||||||| |||||||||||||||| Sbjct: 45810 gtgactttcaagcatggcgacaagactcttgttg 45843
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 196 bits (99), Expect = 4e-47 Identities = 135/147 (91%) Strand = Plus / Minus Query: 9 caggcttgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcc 68 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 1933833 caggcttgcaagtgtttggccagccagcatctactgatgttgccagggtcctgacatgcc 1933774 Query: 69 tctttgagaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcaca 128 ||||||||||| || |||| || || |||||| ||||||| ||||||||||| ||||||| Sbjct: 1933773 tctttgagaaggatctggaatttgaacttgtctgcattgatacattcaagagagagcaca 1933714 Query: 129 ggcttcctgagttcattaggctgcggg 155 ||||||||||||||||| |||||||| Sbjct: 1933713 agcttcctgagttcattaagctgcggg 1933687 Score = 117 bits (59), Expect = 3e-23 Identities = 142/169 (84%), Gaps = 3/169 (1%) Strand = Plus / Minus Query: 207 caagggctatttgccggtacctctgtacccagttcccaaaccagggaaacaggaacctct 266 |||||||||| ||||||||| | ||||| ||||| ||| | |||||| | || ||| | Sbjct: 1933455 caagggctatatgccggtacgtttgtactcagtttccaga---gggaaataagacccttt 1933399 Query: 267 atgggactggttctctggaacgggcctcaatagaacagtggctgcaagcagaggctcaga 326 |||| || || ||||| |||||||| ||||||||||||||||| |||||||| ||||| | Sbjct: 1933398 atggaacgggatctctagaacgggcatcaatagaacagtggcttcaagcagaagctcaaa 1933339 Query: 327 acttcaaccctcccagctcggccctcgtgtttcagctggcatttgctcc 375 | |||| ||||||||||||||||||||| || || || ||||||||||| Sbjct: 1933338 atttcagccctcccagctcggccctcgtcttccatctcgcatttgctcc 1933290 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 170 gtgacattcaagcatggtgacaagactcttgttg 203 ||||| ||||||||||| |||||||||||||||| Sbjct: 1929599 gtgactttcaagcatggcgacaagactcttgttg 1929566
>ref|XM_470191.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 678 Score = 133 bits (67), Expect = 5e-28 Identities = 259/323 (80%) Strand = Plus / Plus Query: 9 caggcttgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcc 68 |||| ||||| ||||| |||||||| || || ||||| || || ||||| ||||| || | Sbjct: 8 caggattgcaggtgttcggccagccggcgtccaccgacgtcgcgagggtcctgacctgtc 67 Query: 69 tctttgagaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcaca 128 |||| |||||||| | |||||||| || ||||||| ||||| ||||||| |||||||| Sbjct: 68 tcttcgagaagaacctcgagttcgagctcatccgcatagacaccttcaagaaggagcaca 127 Query: 129 ggcttcctgagttcattaggctgcgggatccaagtggacaagtgacattcaagcatggtg 188 ||| || |||||||| | ||| |||||||| | || || ||||| ||||||||||| | Sbjct: 128 agctccccgagttcatcaagctacgggatccgaccgggcaggtgactttcaagcatggcg 187 Query: 189 acaagactcttgttgatccaagggctatttgccggtacctctgtacccagttcccaaacc 248 ||||||||||||||||| |||| || || ||||| ||||| | || ||||||||| || Sbjct: 188 acaagactcttgttgattcaagagcgatatgccgatacctgagcactcagttcccagacg 247 Query: 249 agggaaacaggaacctctatgggactggttctctggaacgggcctcaatagaacagtggc 308 | || ||||||| |||| ||||| || || ||||| ||||| || || || ||||||| Sbjct: 248 acgggaacaggacgatctacgggacggggtcgctggagcgggcgtcgatcgagcagtggc 307 Query: 309 tgcaagcagaggctcagaacttc 331 |||| || ||||| |||| |||| Sbjct: 308 tgcaggcggaggcgcagagcttc 330
>gb|AY533123.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase GSTF15 mRNA, complete cds Length = 678 Score = 133 bits (67), Expect = 5e-28 Identities = 259/323 (80%) Strand = Plus / Plus Query: 9 caggcttgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcc 68 |||| ||||| ||||| |||||||| || || ||||| || || ||||| ||||| || | Sbjct: 8 caggattgcaggtgttcggccagccggcgtccaccgacgtcgcgagggtcctgacctgtc 67 Query: 69 tctttgagaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcaca 128 |||| |||||||| | |||||||| || ||||||| ||||| ||||||| |||||||| Sbjct: 68 tcttcgagaagaacctcgagttcgagctcatccgcatagacaccttcaagaaggagcaca 127 Query: 129 ggcttcctgagttcattaggctgcgggatccaagtggacaagtgacattcaagcatggtg 188 ||| || |||||||| | ||| |||||||| | || || ||||| ||||||||||| | Sbjct: 128 agctccccgagttcatcaagctacgggatccgaccgggcaggtgactttcaagcatggcg 187 Query: 189 acaagactcttgttgatccaagggctatttgccggtacctctgtacccagttcccaaacc 248 ||||||||||||||||| |||| || || ||||| ||||| | || ||||||||| || Sbjct: 188 acaagactcttgttgattcaagagcgatatgccgatacctgagcactcagttcccagacg 247 Query: 249 agggaaacaggaacctctatgggactggttctctggaacgggcctcaatagaacagtggc 308 | || ||||||| |||| ||||| || || ||||| ||||| || || || ||||||| Sbjct: 248 acgggaacaggacgatctacgggacggggtcgctggagcgggcgtcgatcgagcagtggc 307 Query: 309 tgcaagcagaggctcagaacttc 331 |||| || ||||| |||| |||| Sbjct: 308 tgcaggcggaggcgcagagcttc 330
>dbj|AK059955.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D02, full insert sequence Length = 951 Score = 133 bits (67), Expect = 5e-28 Identities = 259/323 (80%) Strand = Plus / Plus Query: 9 caggcttgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcc 68 |||| ||||| ||||| |||||||| || || ||||| || || ||||| ||||| || | Sbjct: 116 caggattgcaggtgttcggccagccggcgtccaccgacgtcgcgagggtcctgacctgtc 175 Query: 69 tctttgagaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcaca 128 |||| |||||||| | |||||||| || ||||||| ||||| ||||||| |||||||| Sbjct: 176 tcttcgagaagaacctcgagttcgagctcatccgcatagacaccttcaagaaggagcaca 235 Query: 129 ggcttcctgagttcattaggctgcgggatccaagtggacaagtgacattcaagcatggtg 188 ||| || |||||||| | ||| |||||||| | || || ||||| ||||||||||| | Sbjct: 236 agctccccgagttcatcaagctacgggatccgaccgggcaggtgactttcaagcatggcg 295 Query: 189 acaagactcttgttgatccaagggctatttgccggtacctctgtacccagttcccaaacc 248 ||||||||||||||||| |||| || || ||||| ||||| | || ||||||||| || Sbjct: 296 acaagactcttgttgattcaagagcgatatgccgatacctgagcactcagttcccagacg 355 Query: 249 agggaaacaggaacctctatgggactggttctctggaacgggcctcaatagaacagtggc 308 | || ||||||| |||| ||||| || || ||||| ||||| || || || ||||||| Sbjct: 356 acgggaacaggacgatctacgggacggggtcgctggagcgggcgtcgatcgagcagtggc 415 Query: 309 tgcaagcagaggctcagaacttc 331 |||| || ||||| |||| |||| Sbjct: 416 tgcaggcggaggcgcagagcttc 438
>dbj|AK059226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D08, full insert sequence Length = 631 Score = 103 bits (52), Expect = 4e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 284 gaacgggcctcaatagaacagtggctgcaagcagaggctcagaacttcaaccctcccagc 343 |||||||| ||||||||||||||||| |||||||| ||||| || |||| |||||||||| Sbjct: 1 gaacgggcatcaatagaacagtggcttcaagcagaagctcaaaatttcagccctcccagc 60 Query: 344 tcggccctcgtgtttcagctggcatttgctcc 375 ||||||||||| || || || ||||||||||| Sbjct: 61 tcggccctcgtcttccatctcgcatttgctcc 92
>gb|AF244677.1|AF244677 Zea mays glutathione S-transferase GST 12 mRNA, complete cds Length = 1198 Score = 97.6 bits (49), Expect = 3e-17 Identities = 184/229 (80%) Strand = Plus / Plus Query: 15 tgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcctctttg 74 |||| ||||| || ||||| || || ||||| || |||||||| ||||| |||||||| | Sbjct: 117 tgcaggtgttcggacagccggcttccaccgacgtcgccagggtgctgacctgcctcttcg 176 Query: 75 agaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcacaggcttc 134 ||||||| | |||||||| || ||||||| ||||| ||||||| | ||||| ||| | Sbjct: 177 agaagaacctcgagttcgagctcgtccgcaccgacaccttcaagaagtcgcacaagctcc 236 Query: 135 ctgagttcattaggctgcgggatccaagtggacaagtgacattcaagcatggtgacaaga 194 | |||||||| | |||| ||||||| | || || ||||| |||||||| |||||||||| Sbjct: 237 ccgagttcatcaagctgagggatcctaccgggcaggtgactttcaagcacggtgacaaga 296 Query: 195 ctcttgttgatccaagggctatttgccggtacctctgtacccagttccc 243 | | |||||| | ||| |||| ||||||||||| || || |||||||| Sbjct: 297 caatcgttgattccaggactatctgccggtacctgtgcacgcagttccc 345
>gb|AY103863.1| Zea mays PCO132785 mRNA sequence Length = 959 Score = 97.6 bits (49), Expect = 3e-17 Identities = 184/229 (80%) Strand = Plus / Plus Query: 15 tgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcctctttg 74 |||| ||||| || ||||| || || ||||| || |||||||| ||||| |||||||| | Sbjct: 140 tgcaggtgttcggacagccggcttccaccgacgtcgccagggtgctgacctgcctcttcg 199 Query: 75 agaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcacaggcttc 134 ||||||| | |||||||| || ||||||| ||||| ||||||| | ||||| ||| | Sbjct: 200 agaagaacctcgagttcgagctcgtccgcaccgacaccttcaagaagtcgcacaagctcc 259 Query: 135 ctgagttcattaggctgcgggatccaagtggacaagtgacattcaagcatggtgacaaga 194 | |||||||| | |||| ||||||| | || || ||||| |||||||| |||||||||| Sbjct: 260 ccgagttcatcaagctgagggatcctaccgggcaggtgactttcaagcacggtgacaaga 319 Query: 195 ctcttgttgatccaagggctatttgccggtacctctgtacccagttccc 243 | | |||||| | ||| |||| ||||||||||| || || |||||||| Sbjct: 320 caatcgttgattccaggactatctgccggtacctgtgcacgcagttccc 368
>gb|AF244678.1|AF244678 Zea mays glutathione S-transferase GST 13 mRNA, complete cds Length = 1134 Score = 81.8 bits (41), Expect = 2e-12 Identities = 248/317 (78%) Strand = Plus / Plus Query: 15 tgcaagtgtttggccagccagcatctaccgatgttgccagggttctgacatgcctctttg 74 |||| ||||| || ||||| || || ||||| || || ||||| ||||| |||||||| | Sbjct: 74 tgcaggtgttcggacagccggcgtccaccgacgtcgcgagggtgctgacctgcctcttcg 133 Query: 75 agaagaatttggagttcgatcttgtccgcattgacacattcaagagggagcacaggcttc 134 ||||||| | |||||||| || |||||| ||||| ||||||| | |||| ||| | Sbjct: 134 agaagaacctcgagttcgagctcatccgcaccgacaccttcaagaagtcccacaagctcc 193 Query: 135 ctgagttcattaggctgcgggatccaagtggacaagtgacattcaagcatggtgacaaga 194 | |||||||| | ||| ||||||| | ||| || ||||| |||||||| |||||||| | Sbjct: 194 ccgagttcatcaagctaagggatcctactgggcaggtgactttcaagcacggtgacaaaa 253 Query: 195 ctcttgttgatccaagggctatttgccggtacctctgtacccagttcccaaaccagggaa 254 | | |||||| | ||||| |||||||||||||| || || |||||||| || | || Sbjct: 254 caatcgttgattccagggccatttgccggtacctgtgcacgcagttcccggacgacgggt 313 Query: 255 acaggaacctctatgggactggttctctggaacgggcctcaatagaacagtggctgcaag 314 ||| ||| || || ||||| || || ||||| ||||| || ||||| ||||||||||| | Sbjct: 314 acaagaagctgtacgggacggggtcgctggagcgggcgtccatagagcagtggctgcagg 373 Query: 315 cagaggctcagaacttc 331 | ||||| |||| |||| Sbjct: 374 cggaggcccagagcttc 390
>gb|AC125371.4| Mus musculus BAC clone RP24-401O6 from 16, complete sequence Length = 194685 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 125 cacaggcttcctgagttcattaggct 150 |||||| ||||||||||||||||||| Sbjct: 125461 cacagggttcctgagttcattaggct 125486
>gb|AC159629.2| Mus musculus BAC clone RP24-178C15 from chromosome 12, complete sequence Length = 138643 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 agggagcacaggcttcctgag 139 ||||||||||||||||||||| Sbjct: 69057 agggagcacaggcttcctgag 69037
>emb|CT572991.10| Mouse DNA sequence from clone RP24-434I23 on chromosome 12, complete sequence Length = 101591 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 agggagcacaggcttcctgag 139 ||||||||||||||||||||| Sbjct: 80698 agggagcacaggcttcctgag 80718
>emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chromosome 10 Contains the 5' end of the RSU1 gene for Ras suppressor protein 1, the 3' end of the CUBN gene for cubilin (intrinsic factor-cobalamin receptor) and a CpG island, complete sequence Length = 184703 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 aaccagggaaacaggaacct 264 |||||||||||||||||||| Sbjct: 74659 aaccagggaaacaggaacct 74640
>gb|AC159655.8| Mus musculus 6 BAC RP24-559F15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 200889 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 aacagtggctgcaagcagag 319 |||||||||||||||||||| Sbjct: 84430 aacagtggctgcaagcagag 84411
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 agtgtttggccagccagcat 38 |||||||||||||||||||| Sbjct: 3117821 agtgtttggccagccagcat 3117840
>gb|AC093116.2| Homo sapiens chromosome 3 clone RP11-370K13, complete sequence Length = 182224 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccagggttctgacatgcctc 70 |||||||||||||||||||| Sbjct: 168880 ccagggttctgacatgcctc 168899
>emb|Y07752.1|VCPHEROPH V.carteri mRNA for pherophorin-S Length = 1800 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gcagaggctcagaacttcaa 333 |||||||||||||||||||| Sbjct: 1141 gcagaggctcagaacttcaa 1160
>dbj|AP006309.1| Homo sapiens genomic DNA, chromosome 3 clone:RP11-39I4, complete sequence Length = 168211 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccagggttctgacatgcctc 70 |||||||||||||||||||| Sbjct: 111385 ccagggttctgacatgcctc 111366
>emb|AL732392.8| Mouse DNA sequence from clone RP23-171G10 on chromosome X, complete sequence Length = 188116 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ccagttcccaaaccagggaa 254 |||||||||||||||||||| Sbjct: 59676 ccagttcccaaaccagggaa 59695
>dbj|AP000498.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:603 to 320, anti-oncogene region, section 1/3 Length = 100000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccagggttctgacatgcctc 70 |||||||||||||||||||| Sbjct: 45990 ccagggttctgacatgcctc 45971
>dbj|AB026898.1| Homo sapiens DNA, DLEC1 to ORCTL4 gene region, section 1/2 (DLEC1, ORCTL3, ORCTL4 genes, complete cds) Length = 270000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccagggttctgacatgcctc 70 |||||||||||||||||||| Sbjct: 78642 ccagggttctgacatgcctc 78623 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,402,178 Number of Sequences: 3902068 Number of extensions: 3402178 Number of successful extensions: 58228 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58142 Number of HSP's gapped (non-prelim): 85 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)