ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9m02 |
|---|---|
| Clone Library Name | barley_pub |
>CUL3_HUMAN (Q13618) Cullin-3 (CUL-3)| Length = 768 Score = 172 bits (436), Expect = 7e-43 Identities = 101/216 (46%), Positives = 127/216 (58%), Gaps = 27/216 (12%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAG---DVDGPTISVQILTTGS 195 NM+ KLKTECG QFTSKLE MF D+ S TM F +L + G ++V++LTTG Sbjct: 453 NMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQATGVSLGGVDLTVRVLTTGY 512 Query: 196 WPTQPCAT-CNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATF--------- 345 WPTQ CN+PP E FR YL H+GR+LT Q +MG+AD+ ATF Sbjct: 513 WPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDG 572 Query: 346 -------------GDRKHELNVSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQ 486 RKH L VST+QM +LMLFN+ + T++EI+Q T IP +L R LQ Sbjct: 573 SEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQ 632 Query: 487 SLACVK-GKNVLRKEPMSKDISDSDSFHFNDKFTSK 591 SLAC K + VL KEP SK+I + F ND+FTSK Sbjct: 633 SLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSK 668
>CUL3_MOUSE (Q9JLV5) Cullin-3 (CUL-3)| Length = 768 Score = 172 bits (435), Expect = 9e-43 Identities = 101/216 (46%), Positives = 126/216 (58%), Gaps = 27/216 (12%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAG---DVDGPTISVQILTTGS 195 NM+ KLKTECG QFTSKLE MF D+ S TM F +L + G ++V++LTTG Sbjct: 453 NMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQATGVSLGGVDLTVRVLTTGY 512 Query: 196 WPTQPCAT-CNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATF--------- 345 WPTQ CN+PP E FR YL H+GR+LT Q +MG+AD+ ATF Sbjct: 513 WPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDG 572 Query: 346 -------------GDRKHELNVSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQ 486 RKH L VST+QM +LMLFN+ + T++EI+Q T IP +L R LQ Sbjct: 573 SEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQ 632 Query: 487 SLACVK-GKNVLRKEPMSKDISDSDSFHFNDKFTSK 591 SLAC K + VL KEP SK+I F ND+FTSK Sbjct: 633 SLACGKPTQRVLTKEPKSKEIESGHIFTVNDQFTSK 668
>CUL4A_HUMAN (Q13619) Cullin-4A (CUL-4A)| Length = 659 Score = 165 bits (418), Expect = 8e-41 Identities = 89/191 (46%), Positives = 121/191 (63%), Gaps = 2/191 (1%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAGDVD-GPT-ISVQILTTGSW 198 +ML KLK ECG FTSKLE MF D++ S+D M F ++ D GP ++V ILT G W Sbjct: 374 SMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYW 433 Query: 199 PTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVST 378 PT +L PE++ + E F+A YLG H+GR+L WQT +G+A +KA F + K E VS Sbjct: 434 PTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSL 493 Query: 379 YQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKDISDSD 558 +Q VL++FN D +++EI+ AT I +L+R LQSLAC K + VL K P K++ D D Sbjct: 494 FQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR-VLIKSPKGKEVEDGD 552 Query: 559 SFHFNDKFTSK 591 F FN +F K Sbjct: 553 KFIFNGEFKHK 563
>CUL4B_HUMAN (Q13620) Cullin-4B (CUL-4B)| Length = 895 Score = 162 bits (410), Expect = 7e-40 Identities = 89/194 (45%), Positives = 121/194 (62%), Gaps = 5/194 (2%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYA-----NLAGDVDGPTISVQILTT 189 +ML KLK ECG FTSKLE MF D++ S+D M F N+ G+++ ++V ILT Sbjct: 610 SMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQNVPGNIE---LTVNILTM 666 Query: 190 GSWPTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELN 369 G WPT +LPPE++ + E F+ YLG H+GR+L WQ+ +G+ +KA F + K EL Sbjct: 667 GYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQ 726 Query: 370 VSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKDIS 549 VS +Q VL++FN + + +EI+QAT I +L+R LQSLAC K + VL K P KDI Sbjct: 727 VSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKAR-VLAKNPKGKDIE 785 Query: 550 DSDSFHFNDKFTSK 591 D D F ND F K Sbjct: 786 DGDKFICNDDFKHK 799
>CUL1_ARATH (Q94AH6) Cullin-1| Length = 738 Score = 144 bits (363), Expect = 2e-34 Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 3/192 (1%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAGDV---DGPTISVQILTTGS 195 ++L KLK +CG QFTSK+E M TDL +++ SF L + G ++V +LTTG Sbjct: 454 SILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGF 513 Query: 196 WPTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVS 375 WP+ NLP E++ E F+ Y R+LTW ++G I F + EL VS Sbjct: 514 WPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVS 573 Query: 376 TYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKDISDS 555 TYQ VL+LFN+TD L+Y EI + DL R L SL+C K K +L KEP +K +S + Sbjct: 574 TYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYK-ILLKEPNTKTVSQN 632 Query: 556 DSFHFNDKFTSK 591 D+F FN KFT + Sbjct: 633 DAFEFNSKFTDR 644
>CUL3_SCHPO (Q09760) Cullin-3 (Cul-3)| Length = 785 Score = 139 bits (349), Expect = 8e-33 Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 8/195 (4%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAGDVDGPTI--SVQILTTGSWP 201 M+ +LK E G FT KLE MF D+ SQ+ +Q + N A P + +V IL + WP Sbjct: 491 MISRLKQEAGNVFTQKLEGMFNDMNLSQELLQEYKHNSALQSAKPALDLNVSILASTFWP 550 Query: 202 TQPCA---TCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNV 372 CN P +L +QF YL H GR+L W +MG+AD++ F DRK++LNV Sbjct: 551 IDLSPHKIKCNFPKVLLAQIDQFTDFYLSKHTGRKLLWYPSMGSADVRVNFKDRKYDLNV 610 Query: 373 STYQMCVLMLF---NSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKD 543 ST +L+LF L ++EI + T I DLKR LQSLAC K K +L K+P ++ Sbjct: 611 STIASVILLLFQDLKENQCLIFEEILEKTNIEVGDLKRNLQSLACAKYK-ILLKDPKGRE 669 Query: 544 ISDSDSFHFNDKFTS 588 ++ D F+FN+ F S Sbjct: 670 VNAGDKFYFNENFVS 684
>CUL3_CAEEL (Q17391) Cullin-3| Length = 777 Score = 120 bits (301), Expect = 3e-27 Identities = 83/219 (37%), Positives = 111/219 (50%), Gaps = 31/219 (14%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSF--YANLAGDVDGPTISVQILTTGSWP 201 +L KLKTECG QFT KLE+MF D + SF + IS+++LT G WP Sbjct: 460 LLAKLKTECGCQFTQKLENMFRDKELWLTLATSFRDWREAQPTKMSIDISLRVLTAGVWP 519 Query: 202 TQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATF------------ 345 T C LP E+ V E F +Y H GR+LT T +GNAD+KATF Sbjct: 520 TVQCNPVVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNADVKATFYPPPKASMSNEE 579 Query: 346 ------------GDRKHE---LNVSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRC 480 +RK E L V+T+QM +L+ FN + ++ +++ IP +LKR Sbjct: 580 NGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRN 639 Query: 481 LQSLACVK-GKNVLRKEPMSKDISD-SDSFHFNDKFTSK 591 LQSLA K + +L ++ KD D SD F ND F SK Sbjct: 640 LQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSK 678
>CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)| Length = 745 Score = 112 bits (280), Expect = 8e-25 Identities = 66/194 (34%), Positives = 108/194 (55%), Gaps = 6/194 (3%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDT---MQSFYANLAGDVD-GPTISVQILTTGS 195 M+ KLK CGY+FTSKL M+TD+ S D +F N +D G + + +L G+ Sbjct: 457 MINKLKQACGYEFTSKLHRMYTDMSVSADLNNKFNNFIKNQDTVIDLGISFQIYVLQAGA 516 Query: 196 WP-TQ-PCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELN 369 WP TQ P +T +P E+ + F Y +GR+LTW + ++K + + + Sbjct: 517 WPLTQAPSSTFAIPQELEKSVQMFELFYSQHFSGRKLTWLHYLCTGEVKMNYLGKPYVAM 576 Query: 370 VSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKDIS 549 V+TYQM VL+ FN+++T++YKE++ +T + +L + ++SL VK ++ + +DI Sbjct: 577 VTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVK---MINHDSEKEDID 633 Query: 550 DSDSFHFNDKFTSK 591 SF N F+SK Sbjct: 634 AESSFSLNMNFSSK 647
>CUL2_MOUSE (Q9D4H8) Cullin-2 (CUL-2)| Length = 745 Score = 112 bits (280), Expect = 8e-25 Identities = 66/194 (34%), Positives = 108/194 (55%), Gaps = 6/194 (3%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDT---MQSFYANLAGDVD-GPTISVQILTTGS 195 M+ KLK CGY+FTSKL M+TD+ S D +F N +D G + + +L G+ Sbjct: 457 MINKLKQACGYEFTSKLHRMYTDMSVSADLNNKFNNFIRNQDTVIDLGISFQIYVLQAGA 516 Query: 196 WP-TQ-PCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELN 369 WP TQ P +T +P E+ + F Y +GR+LTW + ++K + + + Sbjct: 517 WPLTQAPSSTFAIPQELEKSVQMFELFYSQHFSGRKLTWLHYLCTGEVKMNYLGKPYVAM 576 Query: 370 VSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKDIS 549 V+TYQM VL+ FN+++T++YKE++ +T + +L + ++SL VK ++ + +DI Sbjct: 577 VTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVK---MINHDSEKEDID 633 Query: 550 DSDSFHFNDKFTSK 591 SF N F+SK Sbjct: 634 AESSFSLNMSFSSK 647
>CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)| Length = 745 Score = 112 bits (280), Expect = 8e-25 Identities = 66/194 (34%), Positives = 108/194 (55%), Gaps = 6/194 (3%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDT---MQSFYANLAGDVD-GPTISVQILTTGS 195 M+ KLK CGY+FTSKL M+TD+ S D +F N +D G + + +L G+ Sbjct: 457 MINKLKQACGYEFTSKLHRMYTDMSVSADLNNKFNNFIKNQDTVIDLGISFQIYVLQAGA 516 Query: 196 WP-TQ-PCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELN 369 WP TQ P +T +P E+ + F Y +GR+LTW + ++K + + + Sbjct: 517 WPLTQAPSSTFAIPQELEKSVQMFELFYSQHFSGRKLTWLHYLCTGEVKMNYLGKPYVAM 576 Query: 370 VSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKDIS 549 V+TYQM VL+ FN+++T++YKE++ +T + +L + ++SL VK ++ + +DI Sbjct: 577 VTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVK---MINHDSEKEDID 633 Query: 550 DSDSFHFNDKFTSK 591 SF N F+SK Sbjct: 634 AESSFSLNMNFSSK 647
>CUL4_SCHPO (O14122) Cullin-4 (Cul-4)| Length = 734 Score = 112 bits (279), Expect = 1e-24 Identities = 62/191 (32%), Positives = 106/191 (55%), Gaps = 3/191 (1%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAGDVDGPTISVQILTTGSWPTQ 207 +L LK CG QFT LE MF D+ S++ SF + A + V +L+ WP+ Sbjct: 449 LLDMLKKTCGSQFTHSLEGMFRDVNISKEFTSSFRHSKAAHNLHRDLYVNVLSQAYWPSY 508 Query: 208 PCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVSTYQM 387 P + LP ++ + F YL G++++W ++G+ +KA F EL++S +Q Sbjct: 509 PESHIRLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNKELSISLFQA 568 Query: 388 CVLMLFNST---DTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKDISDSD 558 CVL+ FN+ + ++Y++++++T + +DL R LQSL+C + + ++ P SK S Sbjct: 569 CVLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARIRPLV-MVPKSKKPSPDT 627 Query: 559 SFHFNDKFTSK 591 F+ N+KFT K Sbjct: 628 MFYVNEKFTDK 638
>CUL1_PONPY (Q5R4G6) Cullin-1 (CUL-1)| Length = 776 Score = 105 bits (261), Expect = 1e-22 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 4/160 (2%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAG----DVDGPTISVQILTTG 192 +M+ KLK CG+++TSKL+ MF D+ S+D + F +L D+D S+Q+L++G Sbjct: 487 SMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLD---FSIQVLSSG 543 Query: 193 SWPTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNV 372 SWP Q T LP E+ ++F A Y H+GR+LTW + ++ ++ L Sbjct: 544 SWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQA 603 Query: 373 STYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSL 492 ST+QM +L+ +N+ D T +++ +T I L + LQ L Sbjct: 604 STFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL 643
>CUL1_MOUSE (Q9WTX6) Cullin-1 (CUL-1)| Length = 776 Score = 105 bits (261), Expect = 1e-22 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 4/160 (2%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAG----DVDGPTISVQILTTG 192 +M+ KLK CG+++TSKL+ MF D+ S+D + F +L D+D S+Q+L++G Sbjct: 487 SMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLD---FSIQVLSSG 543 Query: 193 SWPTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNV 372 SWP Q T LP E+ ++F A Y H+GR+LTW + ++ ++ L Sbjct: 544 SWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQA 603 Query: 373 STYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSL 492 ST+QM +L+ +N+ D T +++ +T I L + LQ L Sbjct: 604 STFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL 643
>CUL1_HUMAN (Q13616) Cullin-1 (CUL-1)| Length = 776 Score = 105 bits (261), Expect = 1e-22 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 4/160 (2%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAG----DVDGPTISVQILTTG 192 +M+ KLK CG+++TSKL+ MF D+ S+D + F +L D+D S+Q+L++G Sbjct: 487 SMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLD---FSIQVLSSG 543 Query: 193 SWPTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNV 372 SWP Q T LP E+ ++F A Y H+GR+LTW + ++ ++ L Sbjct: 544 SWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQA 603 Query: 373 STYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSL 492 ST+QM +L+ +N+ D T +++ +T I L + LQ L Sbjct: 604 STFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL 643
>CUL1_SCHPO (O13790) Cullin-1 (Cul-1) (Cell division control 53 homolog)| Length = 767 Score = 103 bits (257), Expect = 4e-22 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 7/151 (4%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFY---ANLAGDVDGPTISVQILTTGS 195 +ML KLK CG+++TSKL+ MF D+ SQ+ ++F+ + AG++D S +L T Sbjct: 482 SMLSKLKEVCGFEYTSKLQRMFQDISLSQEITEAFWQLPQSRAGNID---FSALVLGTSF 538 Query: 196 WPTQP-CATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDR---KHE 363 WP P +LP E++ + E F+ +Y HNGR+L+W ++ +IKA + + Sbjct: 539 WPLSPNNVNFHLPEELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVTYV 598 Query: 364 LNVSTYQMCVLMLFNSTDTLTYKEIEQATAI 456 VSTYQM VL+L+N D+ TY+E+ + T + Sbjct: 599 FQVSTYQMGVLLLYNHRDSYTYEELAKITGL 629
>CUL2_CAEEL (Q17390) Cullin-2| Length = 776 Score = 100 bits (249), Expect = 3e-21 Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 20/175 (11%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAG------DVDGPTISVQILTT 189 M+ KLK CGY+FTSKL MFTD+ SQ+ +F ++A DV IL Sbjct: 474 MINKLKQACGYEFTSKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFVPTQTMILQA 533 Query: 190 GSWP--------------TQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNA 327 GSWP Q A +LP + V ++F Y G HNGR+LTW NM Sbjct: 534 GSWPLNAPQLSTNSNNQTAQDVANFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQG 593 Query: 328 DIKATFGDRKHELNVSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSL 492 D++ T+ D+++ + YQM L+ F D + K+I + + L + ++++ Sbjct: 594 DVRLTYLDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTI 648
>CUL1_CAEEL (Q17389) Cullin-1 (Abnormal cell lineage protein 19)| Length = 780 Score = 100 bits (248), Expect = 4e-21 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 8/183 (4%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAGDVDGPTI--SVQILTTGSW 198 N + KLK+ CGY++T++L M D + S+D F A + ++ +V +L++GSW Sbjct: 491 NFITKLKSMCGYEYTARLSKMVNDTQVSKDLTADFKEKKADMLGQKSVEFNVLVLSSGSW 550 Query: 199 PTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVST 378 PT P LP ++ E F Y NGRRLTW + +I +T +K+ +T Sbjct: 551 PTFPTTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITSTAFPKKYVFTATT 610 Query: 379 YQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSL---ACVKGKNVLRKE---PMSK 540 QMC ++LFN D+ T ++I AT + + SL +K L+KE PM+ Sbjct: 611 AQMCTMLLFNEQDSYTVEQIAAATKMDEKSAPAIVGSLIKNLVLKADTELQKEDEVPMTA 670 Query: 541 DIS 549 +S Sbjct: 671 TVS 673
>CUL4_CAEEL (Q17392) Cullin-4| Length = 840 Score = 85.9 bits (211), Expect = 8e-17 Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 12/200 (6%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAG-DVDGPTISVQILTTGSWPT 204 +L KLKTECG FT KLE MF D+ S++ + F L + + + +++T WPT Sbjct: 546 VLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFNQYLEHMNKEKANFTARVITPEYWPT 605 Query: 205 QPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDR-KHELNVSTY 381 N+P E+ ++ Y H R + W + +A I A+F K EL + Y Sbjct: 606 YDTYEINIPKEMRDTLTDYQDFYRVQHGNRNVKWHHGLASAVISASFRPGCKKELIATMY 665 Query: 382 QMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCL----------QSLACVKGKNVLRKEP 531 Q +L+LFN +T T EI + T I +++ + + + L V+G +KE Sbjct: 666 QTVILLLFNKCETWTVAEIVEHTKILEIEVVKNVLALLGGRDKPKVLQRVEGGGSEKKEG 725 Query: 532 MSKDISDSDSFHFNDKFTSK 591 +++ ++ F N KFT K Sbjct: 726 TVENLK-NEKFVVNSKFTEK 744
>CUL1_DROME (Q24311) Cullin homolog 1 (Lin-19 homolog protein)| Length = 774 Score = 84.7 bits (208), Expect = 2e-16 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYA-----NLAGDVDGPTISVQILTTG 192 M+ KLK CGY++T KL+ MF D+ S+D F NL ++D +++L++G Sbjct: 487 MISKLKQTCGYEYTVKLQRMFQDIGVSKDLNSYFKQYLAEKNLTMEID---FGIEVLSSG 543 Query: 193 SWPTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATF---GDRKHE 363 SWP Q LP E+ QF Y H+GR+L W M ++ + Sbjct: 544 SWPFQLSNNFLLPSELERSVRQFNEFYAARHSGRKLNWLYQMCKGELIMNVNRNNSSTYT 603 Query: 364 LNVSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVK 504 L ST+QM VL+ FN + T ++++ T +L + LQ L K Sbjct: 604 LQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENLIQVLQILLKAK 650
>CUL3_YEAST (P53202) Cullin-3 (Cullin-B)| Length = 744 Score = 82.8 bits (203), Expect = 7e-16 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 4/186 (2%) Frame = +1 Query: 28 MLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAGDVDGPTISVQILTTGSWPTQ 207 M+ +K G FTSKLE M D+ S + Q+F + ++ + + Q+LT SWP Q Sbjct: 454 MVQMIKKVLGTFFTSKLEIMLRDISLSSEMYQAFQHSTINSIEYLSFAPQVLTRTSWPFQ 513 Query: 208 PCATCN----LPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVS 375 + LPP + + F +Y + R L W ++ +I F +E++ S Sbjct: 514 STNPIDEGISLPPRMSQILAGFEGYYSLKYKERVLKWAHHLSVIEIGCQFNSGYYEISFS 573 Query: 376 TYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKDISDS 555 Y + +LF + LT EI + T IP D+K + S++ + +L+K S ++ S Sbjct: 574 VYAGVIFLLFEDYEELTLGEIYELTHIPIDDVKSLVMSMSTIPRCKILKKSSSSGNMKFS 633 Query: 556 DSFHFN 573 ++ F+ Sbjct: 634 VNYFFS 639
>CUL5_RABIT (Q29425) Cullin-5 (CUL-5) (Vasopressin-activated calcium-mobilizing| receptor) (VACM-1) Length = 780 Score = 75.9 bits (185), Expect = 8e-14 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 11/185 (5%) Frame = +1 Query: 64 FTSKLESMFTDLKTSQDTMQSF---YANLAGDVDGPTISVQILTTGSWP-TQPCATCNLP 231 + +KL MF D+K S+D Q+F + N + +++++IL G+W + +LP Sbjct: 489 YVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLP 548 Query: 232 PEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNS 411 E+ + + Y H+GR+L W M N I +++L V+T+Q+ VL +N Sbjct: 549 TELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQ 608 Query: 412 --TDTLTYKEIEQATAIPSVDLKRCLQSLACVK--GKNVLRKEPM---SKDISDSDSFHF 570 + ++++ ++ AT +P +L+R L SL + VL EP KD ++ F Sbjct: 609 RPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSV 668 Query: 571 NDKFT 585 N +F+ Sbjct: 669 NQEFS 673
>CUL5_PONPY (Q5RB36) Cullin-5 (CUL-5)| Length = 780 Score = 75.9 bits (185), Expect = 8e-14 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 11/185 (5%) Frame = +1 Query: 64 FTSKLESMFTDLKTSQDTMQSF---YANLAGDVDGPTISVQILTTGSWP-TQPCATCNLP 231 + +KL MF D+K S+D Q+F + N + +++++IL G+W + +LP Sbjct: 489 YVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLP 548 Query: 232 PEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNS 411 E+ + + Y H+GR+L W M N I +++L V+T+Q+ VL +N Sbjct: 549 TELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQ 608 Query: 412 --TDTLTYKEIEQATAIPSVDLKRCLQSLACVK--GKNVLRKEPM---SKDISDSDSFHF 570 + ++++ ++ AT +P +L+R L SL + VL EP KD ++ F Sbjct: 609 RPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSV 668 Query: 571 NDKFT 585 N +F+ Sbjct: 669 NQEFS 673
>CUL5_HUMAN (Q93034) Cullin-5 (CUL-5) (Vasopressin-activated calcium-mobilizing| receptor) (VACM-1) Length = 780 Score = 75.9 bits (185), Expect = 8e-14 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 11/185 (5%) Frame = +1 Query: 64 FTSKLESMFTDLKTSQDTMQSF---YANLAGDVDGPTISVQILTTGSWP-TQPCATCNLP 231 + +KL MF D+K S+D Q+F + N + +++++IL G+W + +LP Sbjct: 489 YVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLP 548 Query: 232 PEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNS 411 E+ + + Y H+GR+L W M N I +++L V+T+Q+ VL +N Sbjct: 549 TELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQ 608 Query: 412 --TDTLTYKEIEQATAIPSVDLKRCLQSLACVK--GKNVLRKEPM---SKDISDSDSFHF 570 + ++++ ++ AT +P +L+R L SL + VL EP KD ++ F Sbjct: 609 RPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSV 668 Query: 571 NDKFT 585 N +F+ Sbjct: 669 NQEFS 673
>CUL5_RAT (Q9JJ31) Cullin-5 (CUL-5) (Vasopressin-activated calcium-mobilizing| receptor) (VACM-1) Length = 780 Score = 73.9 bits (180), Expect = 3e-13 Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 11/185 (5%) Frame = +1 Query: 64 FTSKLESMFTDLKTSQDTMQSF---YANLAGDVDGPTISVQILTTGSWP-TQPCATCNLP 231 + +KL MF D+K S+D Q+F + N + +++++IL G+W + +LP Sbjct: 489 YVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLP 548 Query: 232 PEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNS 411 E+ + + Y H+GR+L W M N I +++L V+T+Q+ VL +N Sbjct: 549 TELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQ 608 Query: 412 --TDTLTYKEIEQATAIPSVDLKRCLQSLACVK--GKNVLRKEPM---SKDISDSDSFHF 570 + ++++ ++ AT +P +L+R L SL + VL +P KD ++ F Sbjct: 609 RPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSV 668 Query: 571 NDKFT 585 N F+ Sbjct: 669 NQDFS 673
>CUL5_MOUSE (Q9D5V5) Cullin-5 (CUL-5)| Length = 780 Score = 73.9 bits (180), Expect = 3e-13 Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 11/185 (5%) Frame = +1 Query: 64 FTSKLESMFTDLKTSQDTMQSF---YANLAGDVDGPTISVQILTTGSWP-TQPCATCNLP 231 + +KL MF D+K S+D Q+F + N + +++++IL G+W + +LP Sbjct: 489 YVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLP 548 Query: 232 PEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNS 411 E+ + + Y H+GR+L W M N I +++L V+T+Q+ VL +N Sbjct: 549 TELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQ 608 Query: 412 --TDTLTYKEIEQATAIPSVDLKRCLQSLACVK--GKNVLRKEPM---SKDISDSDSFHF 570 + ++++ ++ AT +P +L+R L SL + VL +P KD ++ F Sbjct: 609 RPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSV 668 Query: 571 NDKFT 585 N F+ Sbjct: 669 NQDFS 673
>CUL6_CAEEL (Q21346) Cullin-6| Length = 729 Score = 73.2 bits (178), Expect = 5e-13 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 2/181 (1%) Frame = +1 Query: 55 GYQFTSKLESMFTDLKTSQDTMQSFY-ANLAGDVDGPTISVQILTTGSWPTQPCATCNLP 231 G ++T L M D K S+D F +D +V + TTG+WP+ LP Sbjct: 453 GLEYTRNLVKMVEDAKISKDLTTEFKDIKTEKSID---FNVILQTTGAWPSLDQIKIILP 509 Query: 232 PEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNS 411 E+ + ++F Y +HNGRRL W + ++ + ++K+ V+ Q+C L LFN Sbjct: 510 RELSTILKEFDTFYNASHNGRRLNWAYSQCRGEVNSKAFEKKYVFIVTASQLCTLYLFNE 569 Query: 412 TDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEPMSKDISDSDS-FHFNDKFTS 588 D+ T ++I +A + + + SL V ++ + KD D+ N K+ + Sbjct: 570 QDSFTIEQISKAIEMTAKSTSAIVGSLNPVIDPVLVVDKGNEKDGYPPDAVVSLNTKYAN 629 Query: 589 K 591 K Sbjct: 630 K 630
>CDC53_YEAST (Q12018) Cell division control protein 53 (Cullin-A) (E3 ubiquitin| ligase complex SCF subunit CDC53) Length = 815 Score = 66.6 bits (161), Expect = 5e-11 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLAGDVDG-----PTISVQILTT 189 N++ +L+ ++T K+ MF D++ S+ F L + D P + +L Sbjct: 502 NIIQRLQAANSMEYTGKITKMFQDIRLSKILEDDFAVALKNEPDYSKAKYPDLQPFVLAE 561 Query: 190 GSWP-TQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGD---RK 357 WP + LP E++ E+ + Y HNGR L W + ++KA G Sbjct: 562 NMWPFSYQEVEFKLPKELVPSHEKLKESYSQKHNGRILKWLWPLCRGELKADIGKPGRMP 621 Query: 358 HELNVSTYQMCVLMLFNSTDTLTYKEIEQATAI 456 V+ +QM +L+L+N D LT + I++ T++ Sbjct: 622 FNFTVTLFQMAILLLYNDADVLTLENIQEGTSL 654
>CUL5_CAEEL (Q23639) Cullin-5| Length = 741 Score = 45.8 bits (107), Expect = 9e-05 Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 18/203 (8%) Frame = +1 Query: 28 MLVKLKTECGY--QFTSKLESMFTDLKTSQDTMQSFYANLAGDVDGPTIS----VQILTT 189 M+ KL+ ECG +KL M D++ ++D SF L G + +I+ +++L Sbjct: 456 MVTKLR-ECGMPSDAVNKLSRMLQDIELNKDMNSSFKKALTGTNNNKSIADSINMKVLNG 514 Query: 190 GSWPTQPCATC--NLPPEILVVSEQFRAHYL-GTHNGRRLTWQTNMGNADIKATFGDRKH 360 G+W +LP E+ E F + GT NG R Sbjct: 515 GAWGRGGSERIRFSLPREL----EDFVPEMVFGTANGGRF-------------------- 550 Query: 361 ELNVSTYQMCVLMLFN--STDTLTYKEIEQATAIPSVDLKRCLQSLAC---VKGKNVLRK 525 +L +T+QM VL FN + D ++ + + AT +P +L R L SL ++ + +L Sbjct: 551 DLECTTFQMAVLFCFNDRAHDKISLETLRLATELPDAELNRTLLSLVAYPKMRYQILLCD 610 Query: 526 EP----MSKDISDSDSFHFNDKF 582 P ++D +DS F N F Sbjct: 611 VPSTTVTARDFTDSTKFLINHDF 633
>ANC2_HUMAN (Q9UJX6) Anaphase-promoting complex subunit 2 (APC2) (Cyclosome| subunit 2) Length = 822 Score = 42.7 bits (99), Expect = 8e-04 Identities = 29/118 (24%), Positives = 52/118 (44%) Frame = +1 Query: 178 ILTTGSWPTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRK 357 IL++ WP +P +I E + Y R L+W+ +G + DR Sbjct: 595 ILSSEFWPPFKDEKLEVPEDIRAALEAYCKKYEQLKAMRTLSWKHTLGLVTMDVELADRT 654 Query: 358 HELNVSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEP 531 + V+ Q +L+ F + T +E+ +A +P L+R ++ + VLR+EP Sbjct: 655 LSVAVTPVQAVILLYFQDQASWTLEELSKAVKMPVALLRR---RMSVWLQQGVLREEP 709
>PARC_HUMAN (Q8IWT3) p53-associated parkin-like cytoplasmic protein| (UbcH7-associated protein 1) Length = 2517 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 13/106 (12%) Frame = +1 Query: 160 PTISVQILTTGSWPTQPCATCN-----LPPEILVVSEQFRAHYLGTHNG--------RRL 300 P IS+ +L+ WP P LP E ++F + Y + N RRL Sbjct: 1693 PAISILVLSPRCWPVSPLCYLYHPRKCLPTEFCDALDRFSSFYSQSQNHPVLDMGPHRRL 1752 Query: 301 TWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNSTDTLTYKEI 438 W T +G A+++ FG K L+VST QM +L+ FN T+ ++ + + Sbjct: 1753 QW-TWLGRAELQ--FG--KQILHVSTVQMWLLLKFNQTEEVSVETL 1793
>ANC2_MOUSE (Q8BZQ7) Anaphase-promoting complex subunit 2 (APC2) (Cyclosome| subunit 2) Length = 837 Score = 40.4 bits (93), Expect = 0.004 Identities = 28/118 (23%), Positives = 52/118 (44%) Frame = +1 Query: 178 ILTTGSWPTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRK 357 IL++ WP +P +I + + Y R L+W+ +G + DR Sbjct: 610 ILSSEFWPPFKDEKLEVPEDIRAALDVYCKKYEKLKAMRTLSWKHTLGLVTMDVELADRT 669 Query: 358 HELNVSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVKGKNVLRKEP 531 + V+ Q VL+ F + + T +E+ + +P L+R ++ + VLR+EP Sbjct: 670 LSVAVTPVQALVLLYFQNQASWTLEELSKVVKMPVALLRR---RMSVWLQQGVLREEP 724
>PARC_MOUSE (Q80TT8) p53-associated parkin-like cytoplasmic protein| Length = 1865 Score = 39.3 bits (90), Expect = 0.009 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%) Frame = +1 Query: 157 GPTISVQILTTGSWPTQPCATCNLP-----PEILVVSEQFRAHYLGTHN--------GRR 297 GP ISV +L+ WP P + P E+ E+F + Y + N RR Sbjct: 1030 GPAISVLVLSPRCWPVSPLCYLHHPRKHLQAELCDALERFSSFYSHSQNCPVLDIGPHRR 1089 Query: 298 LTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKR 477 L W T +G A+++ GD+ ++++T QM +LFN ++ ++ + + + + + L + Sbjct: 1090 LQW-TWLGRAELQ--LGDQTLHVSLNTVQM--WLLFNQSEEVSVETLLRNSDLSPELLHQ 1144 Query: 478 CLQSLACVKGKNVLRK 525 L L G L + Sbjct: 1145 ALLPLTSDNGPLTLEE 1160
>CUL8_YEAST (P47050) Cullin-8| Length = 842 Score = 33.1 bits (74), Expect = 0.62 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +1 Query: 370 VSTYQMCVLMLFNSTDTLTYKEIEQATAIPSVDLKRCLQSLACVK 504 ++ +Q CVL LFN +D LT + I + T + DL L+S K Sbjct: 673 LTLFQTCVLTLFNESDHLTLQVISEQTKLAYKDLALVLKSFCNYK 717
>RDRP_BPMS2 (P00585) RNA-directed RNA polymerase beta chain (EC 2.7.7.48) (RNA| replicase beta chain) Length = 544 Score = 32.3 bits (72), Expect = 1.1 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Frame = +1 Query: 25 NMLVKLKTECGYQFTSKLESMFTDLKTSQDTMQSFYANLA--GDVDGPTISVQILTTGSW 198 +M + L+ G +L+S+ DL QS LA G VDG ++ + + Sbjct: 210 DMNMYLQKGVGAFIRRRLKSVGIDLND-----QSINQRLAQQGSVDGSLATIDLSSASDS 264 Query: 199 PTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQ--TNMGN 324 + LPPE+ ++ R+HY G +G + W+ + MGN Sbjct: 265 ISDRLVWSFLPPELYSYLDRIRSHY-GIVDGETIRWELFSTMGN 307
>TYSY_MYCLE (Q9CBW0) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 266 Score = 31.6 bits (70), Expect = 1.8 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -3 Query: 225 IAGSAWLCWPGSSGEYLDRYSWAINV 148 I G W WP SSG+Y+D+ S A+++ Sbjct: 96 IYGVQWRSWPTSSGDYIDQISTALDL 121
>CR023_HUMAN (Q8NB54) Protein C18orf23| Length = 160 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%) Frame = -3 Query: 339 CLNVCIPHICLPCQPPAIVRAKVVCPELLRNNKD-----------LRWKIAGSAWLCWPG 193 CL VC+ H+C + P VR ++CP +R + +RW+ A + LC PG Sbjct: 64 CLYVCV-HVCECARAPRRVRPALLCPPWVRLERGVRPLGVVLCVRMRWEAAPTPGLC-PG 121
>RDRP_BPFR (P15965) RNA-directed RNA polymerase beta chain (EC 2.7.7.48) (RNA| replicase beta chain) Length = 545 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +1 Query: 145 GDVDGPTISVQILTTGSWPTQPCATCNLPPEILVVSEQFRAHYLGTHNGRRLTWQ--TNM 318 G DG ++ + + + LPPE+ + R+HY G NG+ + W+ + M Sbjct: 248 GSRDGSLATIDLSSASDSISDRLVWSFLPPELYSYLDMIRSHY-GYVNGKMIRWELFSTM 306 Query: 319 GN 324 GN Sbjct: 307 GN 308
>TYSY_SYMTH (Q67JQ1) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 283 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = -3 Query: 225 IAGSAWLCWPGSSGEYLDRYSWAINVTSKIGI--ETLHRILRRLQIS 91 I G W W G+ G D+ +W I +I E H RRL +S Sbjct: 104 IYGKQWRAWEGADGRTYDQIAWVIQQIREIAADPERPHPNSRRLVVS 150
>Y359_TREPA (O83378) Hypothetical protein TP0359| Length = 211 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +1 Query: 241 LVVSEQFRAHYLGTHNGRRLTWQTNMGNADIKATFGDRKHELNVS 375 L S QFR+ +L H+ W T++ + DI DRK +++S Sbjct: 97 LTQSPQFRSFFLRVHSLGGHGWHTSLDHFDIDVPLKDRKRYVHLS 141
>TYSY_MYCTU (P67044) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 263 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -3 Query: 225 IAGSAWLCWPGSSGEYLDRYSWAINV 148 I G W WP SGE++D+ S A+++ Sbjct: 93 IYGVQWRSWPAPSGEHIDQISAALDL 118
>TYSY_MYCBO (P67045) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 263 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -3 Query: 225 IAGSAWLCWPGSSGEYLDRYSWAINV 148 I G W WP SGE++D+ S A+++ Sbjct: 93 IYGVQWRSWPAPSGEHIDQISAALDL 118
>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)| Length = 4289 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = -1 Query: 290 PLCVPR*CARNCSETTRISGGRLQVAHGCVGQD 192 P C R C R CS+ R GGR G G D Sbjct: 242 PDCSQRSCPRGCSQRGRCEGGRCVCDPGYTGDD 274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,285,700 Number of Sequences: 219361 Number of extensions: 1861112 Number of successful extensions: 5273 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 5065 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5232 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
