>KLF4_HUMAN (O43474) Krueppel-like factor 4 (Epithelial zinc-finger protein|
           EZF) (Gut-enriched krueppel-like factor)
          Length = 470

 Score = 35.4 bits (80), Expect = 0.092
 Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
 Frame = -3

Query: 287 HPRLHVP---HPHSTTPSLD*PHQTWLYSSSLHMDQPPYIYHSLSP-GPCLLQHVSSSCG 120
           HP L +P   HPH        P+        +    PP  Y  L P G C+ +      G
Sbjct: 322 HPALPLPPGFHPHPG------PNYPSFLPDQMQPQVPPLHYQELMPPGSCMPEEPKPKRG 375

Query: 119 ERI--QTCAACHIIDDSFVSCGPRPKRSSSFHIHLTTHIGK 3
            R   +   A H  D  +  CG    +SS    HL TH G+
Sbjct: 376 RRSWPRKRTATHTCD--YAGCGKTYTKSSHLKAHLRTHTGE 414

>KLF4_MOUSE (Q60793) Krueppel-like factor 4 (Gut-enriched krueppel-like factor)|
           (Epithelial zinc-finger protein EZF)
          Length = 474

 Score = 33.5 bits (75), Expect = 0.35
 Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
 Frame = -3

Query: 287 HPRLHVP---HPH---STTPSLD*PHQTWLYSSSLHMDQPPYIYHSLSPGPCLLQHVSSS 126
           HP L +P   HPH   +  P L  P Q      SLH  +       + PG CL +     
Sbjct: 326 HPGLPLPPGFHPHPGPNYPPFL--PDQMQSQVPSLHYQE------LMPPGSCLPEEPKPK 377

Query: 125 CGERI--QTCAACHIIDDSFVSCGPRPKRSSSFHIHLTTHIGK 3
            G R   +   A H  D  +  CG    +SS    HL TH G+
Sbjct: 378 RGRRSWPRKRTATHTCD--YAGCGKTYTKSSHLKAHLRTHTGE 418

>DPOL_ADECT (P87553) DNA polymerase (EC 2.7.7.7)|
          Length = 1150

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = +2

Query: 65   TKQRNRLL---YGKLHKFVSVRHNLKIRAEEDKDRVRENDKYKEVDPCAMMMNTTMFDEA 235
            T   NR+L   YG      +     K+  E+ K R+++N                +FD +
Sbjct: 949  TPLENRVLKSVYGDTDSLFTTMEGYKLMEEKGKKRLKKNG------------GKLVFDPS 996

Query: 236  NPMMEWLNEDEEHVILDGSDAASA 307
            NP + WL E E      GSDA S+
Sbjct: 997  NPELTWLVECETQCEKCGSDAYSS 1020

>ZNF45_HUMAN (Q02386) Zinc finger protein 45 (BRC1744)|
          Length = 682

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
 Frame = -3

Query: 200 HMDQPPYIYHSLSPGPC----LLQHVSSSCGERIQTCAACHIIDDSFVSCGPRPKRSSSF 33
           H  + PY       G C    LL H     GE+   C AC          G    RSS F
Sbjct: 382 HTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDAC----------GKGFSRSSDF 431

Query: 32  HIHLTTHIGK 3
           +IH   H G+
Sbjct: 432 NIHFRVHTGE 441

>ZN418_HUMAN (Q8TF45) Zinc finger protein 418|
          Length = 676

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 18/67 (26%)
 Frame = -3

Query: 149 LLQHVSSSCGERIQTCAAC--------HIIDDSFVSCGPRP----------KRSSSFHIH 24
           L+QH  S  GER   C  C        H+I+   V  G RP          + SS F +H
Sbjct: 441 LIQHQRSHTGERPYECRECRKLFRGKSHLIEHQRVHTGERPYECNECGKSFQDSSGFRVH 500

Query: 23  LTTHIGK 3
              H G+
Sbjct: 501 QRVHTGE 507

>ZN169_HUMAN (Q14929) Zinc finger protein 169|
          Length = 590

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -3

Query: 200 HMDQPPYIYHSLSPGPC----LLQHVSSSCGERIQTCAACHIIDDSFVSCGPRPKRSSSF 33
           H+++ P++      G C    LLQH SS  GER   C          + CG   ++ S  
Sbjct: 327 HLEEKPFVCPECGRGFCQKASLLQHQSSHTGERPFLC----------LECGRSFRQQSLL 376

Query: 32  HIHLTTHIGK 3
             H  TH G+
Sbjct: 377 LSHQVTHSGE 386

>ZN255_HUMAN (Q9UID9) Zinc finger protein 255 (Bone marrow zinc finger 2)|
           (BMZF-2)
          Length = 623

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -3

Query: 170 SLSPGPCLLQHVSSSCGERIQTCAACHIIDDSFVSCGPRPKRSSSFHIHLTTHIGK 3
           S S  PCLL+H     GE+   C            CG R  ++S  H H   H G+
Sbjct: 380 SFSRAPCLLKHERLHSGEKPFQCE----------ECGKRFTQNSHLHSHQRVHTGE 425

>ZN224_HUMAN (Q9NZL3) Zinc finger protein 224|
          Length = 707

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -3

Query: 170 SLSPGPCLLQHVSSSCGERIQTCAACHIIDDSFVSCGPRPKRSSSFHIHLTTHIGK 3
           S S  PCLL+H     GE+   C            CG R  ++S  H H   H G+
Sbjct: 464 SFSRAPCLLKHERLHSGEKPFQCE----------ECGKRFTQNSHLHSHQRVHTGE 509

>RPF1_BRARE (Q6IQU6) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 330

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +2

Query: 59  VHTKQRNRLLYGKLHKFVSVRHNLKIRAEEDKDRVRENDKYKEVDPCAMMMNTTMFDEA- 235
           +  KQR   ++ KL K    +  ++++ ++ K+R   +DK    +    + N  ++DE  
Sbjct: 38  IKNKQRRHTMFLKL-KEEKRKKRMELKKKKKKERKALDDKAPPKEVPKTIENQRIYDETT 96

Query: 236 -NPMMEWLNEDEEHVILDGSDAASAVFEEI 322
            NP      EDEE    +G+D  SA F  +
Sbjct: 97  VNP------EDEEVAFDEGTDEFSAYFNRL 120

>ZN140_HUMAN (P52738) Zinc finger protein 140|
          Length = 457

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 149 LLQHVSSSCGERIQTCAACHIIDDSFVSCGPRPKRSSSFHIHLTTHIGK 3
           L+QH  S  GE+   CA C   D +F        RS S  +H  TH G+
Sbjct: 372 LIQHTKSHTGEKPYACAEC---DKAF-------SRSFSLILHQRTHTGE 410

>APTX_DROME (Q8MSG8) Protein aprataxin-like|
          Length = 662

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 167 ENDKYKEVDPCAMMMNTTMFDEANPMMEWLNEDE 268
           E D+ K+VD    M++ T  DEA    + LNE+E
Sbjct: 410 ERDQKKKVDKIIQMISETKLDEAEAKPKLLNEEE 443

>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region|
          Length = 153

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
 Frame = -3

Query: 287 HPRLHVPHPHST-TPSLD*PHQTWLYSSSLHMDQPPY--------IYHSLSPGPCLLQHV 135
           HP  H PHPH+T TP+    H      S+L ++ P +        + HS  P P  + H+
Sbjct: 46  HPHPHTPHPHTTPTPTPHHTHTPHTTLSNLSLNLPSHYPTSPLVTLPHSTIPLPTTI-HL 104

Query: 134 SS 129
           S+
Sbjct: 105 ST 106

>MCP_CAVPO (P70105) Membrane cofactor protein precursor (CD46 antigen)|
          Length = 379

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 277 YMFLILIQPLHHWISLIKHGCIHHHCTWIN 188
           Y+ +   +  H W+ +   GCI   CT++N
Sbjct: 74  YLMVATCEKNHSWVPITDDGCIKKQCTYLN 103

>HSP70_PLEWA (Q91291) Heat shock 70 kDa protein (HSP70)|
          Length = 645

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 113 SVRHNLKIRAEED--KDRVRENDKYKEVDPCAMMMNTTMFDEANPMMEWLNEDEEH 274
           S+  N+K   E D  KD++ E+D+ K VD C     T  + E N M E   E+ EH
Sbjct: 546 SIAFNMKSTVEGDNLKDKISEDDRKKIVDKC---NQTISWMENNQMAE--KEEYEH 596

>ZN177_HUMAN (Q13360) Zinc finger protein 177|
          Length = 321

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = -3

Query: 200 HMDQPPYIYH----SLSPGPCLLQHVSSSCGERIQTCAACHIIDDSFVSCGPRPKRSSSF 33
           H  + PY  +    S S G  L+ H  +  GE+   C            CG   + SS  
Sbjct: 230 HTGEKPYECNQCGKSFSTGSYLIVHKRTHTGEKTYECK----------ECGKAFRNSSCL 279

Query: 32  HIHLTTHIGK 3
            +H+ TH G+
Sbjct: 280 RVHVRTHTGE 289

>ZFP37_RAT (O88553) Zinc finger protein 37 (Zfp-37)|
          Length = 601

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 149 LLQHVSSSCGERIQTCAACHIIDDSFVSCGPRPKRSSSFHIHLTTHIGK 3
           L+QH+ S  GE+   C            CG   + +SSF  H+ TH G+
Sbjct: 358 LMQHIRSHTGEKPYECK----------ECGKSFRYNSSFTEHVRTHTGE 396

>US441_GAHVG (Q05105) Hypothetical 16.7 kDa protein|
          Length = 147

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
 Frame = +2

Query: 170 NDKYKEVDPCAMMMNTTMFDEANPMMEWLNEDEEHVILDG----SDAASAVFEEIRRLNS 337
           ND+ K  D C+ + N+         M  +N+ EE  +++G    ++   +VF ++R+ + 
Sbjct: 30  NDESKVDDRCSDIHNSLAQSNVTSSMSVMNDSEECPLINGPSMQAEDPKSVFYKVRKPDR 89

Query: 338 SKKSS--HLGRKGN-GTKRKRVL 397
           S+  S  +L   GN G +R++ +
Sbjct: 90  SRDFSWQNLNSHGNSGLRREKYI 112

>ZN250_HUMAN (P15622) Zinc finger protein 250 (Zinc finger protein 647)|
          Length = 560

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
 Frame = -3

Query: 230 HQTWLYSSSLHMDQPPYIY----HSLSPGPCLLQHVSSSCGERIQTCAACHIIDDSFVSC 63
           H   +    +H  + PY+     H+ S    L+QH     GE+   C            C
Sbjct: 435 HSHLIQHQRVHTGEKPYVCGECGHAFSARRSLIQHERIHTGEKPFQC----------TEC 484

Query: 62  GPRPKRSSSFHIHLTTHIGK 3
           G      ++  +HL TH G+
Sbjct: 485 GKAFSLKATLIVHLRTHTGE 504

>ZN221_HUMAN (Q9UK13) Zinc finger protein 221|
          Length = 617

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
 Frame = -3

Query: 215 YSSSLHMDQPPY----IYHSLSPGPCLLQHVSSSCGERIQTCAACHIIDDSFVSCGPRPK 48
           +   +H  + PY       S     CLL+H     GE+   C            CG R  
Sbjct: 467 FHQRVHTGERPYNCKECGKSFGWASCLLKHQRLHSGEKPFKCE----------ECGKRFT 516

Query: 47  RSSSFHIHLTTHIGK 3
           +S+  H H T H G+
Sbjct: 517 QSTQLHSHQTCHTGE 531

>PAQRA_MOUSE (Q8R189) Monocyte to macrophage differentiation factor 2 (Progestin|
           and adipoQ receptor family member X)
          Length = 247

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 48  LGPWSTRNKGIVYYMASCTSLYPFATT*RYVL 143
           LGPW++  + +V+ MAS  ++Y F    RY L
Sbjct: 129 LGPWASHMRWLVWIMASIGTIYVFFFHERYKL 160

>XFIN_XENLA (P08045) Zinc finger protein Xfin|
          Length = 1350

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = -3

Query: 227 QTWLYSSSLHMDQPPYIYHSLSPG----PCLLQHVSSSCGERIQTCAACHIIDDSFVSCG 60
           +++L     H  + PY+    + G      L++H  +  GER   CA CH     F+   
Sbjct: 339 KSFLNHQQTHSREKPYLCSHCNKGFIQNSDLVKHFRTHTGERPYQCAECH---KGFI--- 392

Query: 59  PRPKRSSSFHIHLTTHIGK 3
               + S    HL TH G+
Sbjct: 393 ----QKSDLVKHLRTHTGE 407

>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor|
          Length = 4007

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
 Frame = -3

Query: 173 HSLSPGPCLLQ------HVSSSCGERIQTCAACH-IIDDSFVSCGPRPKRSSSFHIHLT 18
           H L  G CL Q      H   SC E   TC  CH  ++   +SC P        HI LT
Sbjct: 736 HVLLDGQCLSQCPDGYFHQEGSCTECHPTCRQCHGPLESDCISCYP--------HISLT 786

>ZN250_MOUSE (Q7TNU6) Zinc finger protein 250 (Zinc finger protein 647)|
          Length = 535

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
 Frame = -3

Query: 230 HQTWLYSSSLHMDQPPYIY----HSLSPGPCLLQHVSSSCGERIQTCAACHIIDDSFVSC 63
           H   +    +H  + PY+     H+ S    L+QH     GE+   C            C
Sbjct: 410 HSHLIQHQRVHTGEKPYVCGECGHAFSARRSLIQHERIHTGEKPFQC----------TEC 459

Query: 62  GPRPKRSSSFHIHLTTHIGK 3
           G      ++  +HL TH G+
Sbjct: 460 GKAFSLKATLIVHLRTHTGE 479

>ZN211_HUMAN (Q13398) Zinc finger protein 211 (Zinc finger protein C2H2-25)|
          Length = 367

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
 Frame = -3

Query: 218 LYSSSLHMDQPPYIYH----SLSPGPCLLQHVSSSCGERIQTCAACHIIDDSFVSCGPRP 51
           +Y   +H  + P+  +    S S    L+ H     GER   C+           CG   
Sbjct: 188 IYHQRVHTGERPHECNECGKSFSRSSSLIHHRRLHTGERPYECS----------KCGKSF 237

Query: 50  KRSSSFHIHLTTHIGK 3
           K+SSSF  H   H G+
Sbjct: 238 KQSSSFSSHRKVHTGE 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,662,828
Number of Sequences: 219361
Number of extensions: 1384324
Number of successful extensions: 5011
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4966
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)