ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9l24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
3dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.11
5emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.11
6emb|AL713938.2|CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372... 46 0.11
7gb|AC119279.8| Mus musculus chromosome 8, clone RP24-460J16, com... 44 0.44
8gb|AC113041.9| Mus musculus chromosome 8, clone RP23-240K12, com... 44 0.44
9gb|AC118216.15| Mus musculus chromosome 1, clone RP23-209N14, co... 42 1.8
10emb|CR378668.1| Photobacterium profundum SS9; segment 6/12 42 1.8
11gb|AC090916.3| Homo sapiens chromosome 18, clone RP11-862C6, com... 42 1.8
12gb|AC100795.2| Homo sapiens chromosome 18, clone RP11-956K8, com... 42 1.8
13gb|AC139035.12| Mus musculus chromosome 5, clone RP23-348E9, com... 42 1.8
14gb|AC046202.5| Homo sapiens chromosome 18, clone RP11-318I15, co... 42 1.8
15gb|AC084506.1|CBRG15A11 Caenorhabditis briggsae cosmid G15A11, c... 42 1.8
16gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K1... 40 6.9
17gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
18gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.9
19gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 6.9
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.9
21ref|XM_569412.1| Cryptococcus neoformans var. neoformans JEC21 l... 40 6.9
22gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.9
23gb|AC122041.4| Mus musculus BAC clone RP24-443H19 from chromosom... 40 6.9
24emb|CR727516.2|CNS0GOAQ Tetraodon nigroviridis full-length cDNA 40 6.9
25gb|AC145817.1| Pan troglodytes BAC clone RP43-6C4 from 7, comple... 40 6.9
26gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.9
27gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
28gb|AC096739.3| Homo sapiens BAC clone RP11-213G21 from 4, comple... 40 6.9
29gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str... 40 6.9
30gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosom... 40 6.9
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
33dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
34dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
35dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
36dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
37dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
38gb|AC083869.2|AC083869 Homo sapiens chromosome 7 clone RP11-733N... 40 6.9
39dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
40dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
41dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
42dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
43dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
44dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
45dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
46dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
47emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.9
48emb|AJ535214.1|OSA535214 Oryza sativa (japonica cultivar-group) ... 40 6.9
49emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058... 40 6.9
50emb|AL596331.15| Mouse DNA sequence from clone RP23-81G14 on chr... 40 6.9 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 20       tcaagtggatgtgaaaggaactggagc 46
                ||||||||||||||| |||||||||||
Sbjct: 15159935 tcaagtggatgtgaacggaactggagc 15159909



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 24400453 agtggatgtgaaaggaattggagc 24400430
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 20       tcaagtggatgtgaaaggaactggagc 46
                ||||||||||||||| |||||||||||
Sbjct: 12180852 tcaagtggatgtgaacggaactggagc 12180826
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>dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0063H21
          Length = 188058

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 20    tcaagtggatgtgaaaggaactggagc 46
             ||||||||||||||| |||||||||||
Sbjct: 54344 tcaagtggatgtgaacggaactggagc 54318
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 20       tcaagtggatgtgaaaggaactggagc 46
                ||||||||||||||| |||||||||||
Sbjct: 15114220 tcaagtggatgtgaacggaactggagc 15114194



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 24328659 agtggatgtgaaaggaattggagc 24328636
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>emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa0063F10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 153687

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 20    tcaagtggatgtgaaaggaactggagc 46
             ||||||||||||||| |||||||||||
Sbjct: 95981 tcaagtggatgtgaacggaactggagc 96007
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>emb|AL713938.2|CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372_C12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 113071

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 20    tcaagtggatgtgaaaggaactggagc 46
             ||||||||||||||| |||||||||||
Sbjct: 99352 tcaagtggatgtgaacggaactggagc 99326
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>gb|AC119279.8| Mus musculus chromosome 8, clone RP24-460J16, complete sequence
          Length = 139356

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 381    aaaggaagagagtattggaaga 402
              ||||||||||||||||||||||
Sbjct: 122432 aaaggaagagagtattggaaga 122453
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>gb|AC113041.9| Mus musculus chromosome 8, clone RP23-240K12, complete sequence
          Length = 175827

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 381   aaaggaagagagtattggaaga 402
             ||||||||||||||||||||||
Sbjct: 29458 aaaggaagagagtattggaaga 29479
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>gb|AC118216.15| Mus musculus chromosome 1, clone RP23-209N14, complete sequence
          Length = 269784

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 366    agggcaatggaacgaaaagga 386
              |||||||||||||||||||||
Sbjct: 148932 agggcaatggaacgaaaagga 148952
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>emb|CR378668.1| Photobacterium profundum SS9; segment 6/12
          Length = 348128

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 215    acaaccatgtttgatgaggctaatccaat 243
              |||| |||||||| |||||||||||||||
Sbjct: 297203 acaaacatgtttggtgaggctaatccaat 297231
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>gb|AC090916.3| Homo sapiens chromosome 18, clone RP11-862C6, complete sequence
          Length = 197963

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 340   caagaaatcctctcatcttgg 360
             |||||||||||||||||||||
Sbjct: 10058 caagaaatcctctcatcttgg 10078
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>gb|AC100795.2| Homo sapiens chromosome 18, clone RP11-956K8, complete sequence
          Length = 193569

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 340   caagaaatcctctcatcttgg 360
             |||||||||||||||||||||
Sbjct: 21932 caagaaatcctctcatcttgg 21912
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>gb|AC139035.12| Mus musculus chromosome 5, clone RP23-348E9, complete sequence
          Length = 237627

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 240   caatgatggagtggttgaatgagga 264
             |||||||||| ||||||||||||||
Sbjct: 67090 caatgatggaatggttgaatgagga 67114
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>gb|AC046202.5| Homo sapiens chromosome 18, clone RP11-318I15, complete sequence
          Length = 179210

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 340    caagaaatcctctcatcttgg 360
              |||||||||||||||||||||
Sbjct: 112640 caagaaatcctctcatcttgg 112620
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>gb|AC084506.1|CBRG15A11 Caenorhabditis briggsae cosmid G15A11, complete sequence
          Length = 42688

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 258   atgaggatgaggaacatgtaa 278
             |||||||||||||||||||||
Sbjct: 12909 atgaggatgaggaacatgtaa 12929
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>gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K10, complete sequence
          Length = 182660

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 160   ggtgagagagaatgataaatataa 183
             ||||||||| ||||||||||||||
Sbjct: 68732 ggtgagagaaaatgataaatataa 68709
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>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10,
             complete sequence
          Length = 153366

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 38738 agtggatgtgaaaggaattggagc 38761
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    tggaagaagatgaggatgac 415
              ||||||||||||||||||||
Sbjct: 286724 tggaagaagatgaggatgac 286705
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 160     ggtgagagagaatgataaatataa 183
               ||||||||| ||||||||||||||
Sbjct: 2089453 ggtgagagaaaatgataaatataa 2089476
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 13999031 agtggatgtgaaaggaattggagc 13999008
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>ref|XM_569412.1| Cryptococcus neoformans var. neoformans JEC21 late endosome to
           vacuole transport-related protein (CNC00960) partial
           mRNA
          Length = 881

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 396 tggaagaagatgaggatgac 415
           ||||||||||||||||||||
Sbjct: 645 tggaagaagatgaggatgac 664
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>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 12451 agtggatgtgaaaggaattggagc 12474
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>gb|AC122041.4| Mus musculus BAC clone RP24-443H19 from chromosome 16, complete
            sequence
          Length = 183268

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 383  aggaagagagtattggaagaagat 406
            ||||||| ||||||||||||||||
Sbjct: 4228 aggaagaaagtattggaagaagat 4205
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>emb|CR727516.2|CNS0GOAQ Tetraodon nigroviridis full-length cDNA
          Length = 1075

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 gatgaatacaaccatgtttg 227
           ||||||||||||||||||||
Sbjct: 780 gatgaatacaaccatgtttg 761
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>gb|AC145817.1| Pan troglodytes BAC clone RP43-6C4 from 7, complete sequence
          Length = 134049

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    tgagagagaatgataaatat 181
              ||||||||||||||||||||
Sbjct: 131726 tgagagagaatgataaatat 131745
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>gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0022F22, from chromosome 3, complete sequence
          Length = 144268

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 23   agtggatgtgaaaggaactggagc 46
            ||||||||||||||||| ||||||
Sbjct: 8710 agtggatgtgaaaggaattggagc 8687
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>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10,
             complete sequence
          Length = 102275

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 37578 agtggatgtgaaaggaattggagc 37601
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>gb|AC096739.3| Homo sapiens BAC clone RP11-213G21 from 4, complete sequence
          Length = 96482

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   tggaagaagatgaggatgac 415
             ||||||||||||||||||||
Sbjct: 58829 tggaagaagatgaggatgac 58810
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>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 30343 agtggatgtgaaaggaattggagc 30320
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>gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosome 16, complete sequence
          Length = 226870

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 383    aggaagagagtattggaagaagat 406
              ||||||| ||||||||||||||||
Sbjct: 206402 aggaagaaagtattggaagaagat 206379
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 16151798 agtggatgtgaaaggaattggagc 16151821
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 28411292 agtggatgtgaaaggaattggagc 28411269



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 12430315 agtggatgtgaaaggaattggagc 12430292
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 12790824 agtggatgtgaaaggaattggagc 12790847
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 23      agtggatgtgaaaggaactggagc 46
               ||||||||||||||||| ||||||
Sbjct: 5352064 agtggatgtgaaaggaattggagc 5352087
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 13994006 agtggatgtgaaaggaattggagc 13993983
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 34474856 agtggatgtgaaaggaattggagc 34474879
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 23       agtggatgtgaaaggaactggagc 46
                ||||||||||||||||| ||||||
Sbjct: 18317047 agtggatgtgaaaggaattggagc 18317024



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 23      agtggatgtgaaaggaactggagc 46
               ||||||||||||||||| ||||||
Sbjct: 7995029 agtggatgtgaaaggaattggagc 7995052
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>gb|AC083869.2|AC083869 Homo sapiens chromosome 7 clone RP11-733N14, complete sequence
          Length = 172237

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    tgagagagaatgataaatat 181
              ||||||||||||||||||||
Sbjct: 158167 tgagagagaatgataaatat 158148
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>dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1008C01
          Length = 144141

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     agtggatgtgaaaggaactggagc 46
              ||||||||||||||||| ||||||
Sbjct: 101341 agtggatgtgaaaggaattggagc 101364
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>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1108H10
          Length = 136357

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 74381 agtggatgtgaaaggaattggagc 74358
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>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1111_C07
          Length = 115190

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 91098 agtggatgtgaaaggaattggagc 91121
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>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0556H01
          Length = 149800

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 56399 agtggatgtgaaaggaattggagc 56422
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>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1328_D07
          Length = 155007

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     agtggatgtgaaaggaactggagc 46
              ||||||||||||||||| ||||||
Sbjct: 152011 agtggatgtgaaaggaattggagc 152034
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>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0019A05
          Length = 144255

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 91601 agtggatgtgaaaggaattggagc 91624
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>dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0613B07
          Length = 191756

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 74597 agtggatgtgaaaggaattggagc 74574
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>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0470D12
          Length = 157248

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     agtggatgtgaaaggaactggagc 46
              ||||||||||||||||| ||||||
Sbjct: 136855 agtggatgtgaaaggaattggagc 136832
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>emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811D08, complete
             sequence
          Length = 123337

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 74233 agtggatgtgaaaggaattggagc 74256
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>emb|AJ535214.1|OSA535214 Oryza sativa (japonica cultivar-group) pdr14 pseudogene, exons 1-34
          Length = 17647

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 16665 agtggatgtgaaaggaattggagc 16688
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>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103803

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    agtggatgtgaaaggaactggagc 46
             ||||||||||||||||| ||||||
Sbjct: 63985 agtggatgtgaaaggaattggagc 63962
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>emb|AL596331.15| Mouse DNA sequence from clone RP23-81G14 on chromosome 11, complete
             sequence
          Length = 228391

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   caagaaatcctctcatcttg 359
             ||||||||||||||||||||
Sbjct: 30821 caagaaatcctctcatcttg 30840


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,269,185
Number of Sequences: 3902068
Number of extensions: 4269185
Number of successful extensions: 85368
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84897
Number of HSP's gapped (non-prelim): 471
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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