ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9l21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477178.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1326 Score = 161 bits (81), Expect = 4e-36 Identities = 153/177 (86%) Strand = Plus / Plus Query: 1 cgctgggcggcatcggcaacaaggtcaagctcgcctacaccatgctcaacctcccttctt 60 |||| |||||| |||||| |||||||||||||||||||||||||||||||||||| || | Sbjct: 455 cgctcggcggcgtcggcagcaaggtcaagctcgcctacaccatgctcaacctcccctcct 514 Query: 61 gggagaacttgaatctcacggtgaacttcttctccaccaagaataccaagttcaccgcgg 120 ||||||| |||| || |||||||||||||||||||||||||| ||||||||| |||| | Sbjct: 515 gggagaatctgaacctgacggtgaacttcttctccaccaagaacaccaagttcgccgccg 574 Query: 121 gctgcccagccctcccctgccacatgaagactgtcgttagcccgatggaggatctcc 177 ||||||| | || || ||||||||||||| | ||| || || |||||||||||| Sbjct: 575 gctgcccgccgctgccgggccacatgaagacggccgtctgctcgctggaggatctcc 631
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 1 cgctgggcggcatcggcaacaaggtcaagctcgcctacaccatgctcaacctcccttctt 60 |||| |||||| |||||| |||||||||||||||||||||||||||||||||||| || | Sbjct: 7291876 cgctcggcggcgtcggcagcaaggtcaagctcgcctacaccatgctcaacctcccctcct 7291817 Query: 61 gggagaa 67 ||||||| Sbjct: 7291816 gggagaa 7291810 Score = 79.8 bits (40), Expect = 1e-11 Identities = 85/100 (85%) Strand = Plus / Minus Query: 78 acggtgaacttcttctccaccaagaataccaagttcaccgcgggctgcccagccctcccc 137 |||||||||||||||||||||||||| ||||||||| |||| |||||||| | || || Sbjct: 7291684 acggtgaacttcttctccaccaagaacaccaagttcgccgccggctgcccgccgctgccg 7291625 Query: 138 tgccacatgaagactgtcgttagcccgatggaggatctcc 177 ||||||||||||| | ||| || || |||||||||||| Sbjct: 7291624 ggccacatgaagacggccgtctgctcgctggaggatctcc 7291585
>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0086N05 Length = 163670 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 1 cgctgggcggcatcggcaacaaggtcaagctcgcctacaccatgctcaacctcccttctt 60 |||| |||||| |||||| |||||||||||||||||||||||||||||||||||| || | Sbjct: 18557 cgctcggcggcgtcggcagcaaggtcaagctcgcctacaccatgctcaacctcccctcct 18498 Query: 61 gggagaa 67 ||||||| Sbjct: 18497 gggagaa 18491 Score = 79.8 bits (40), Expect = 1e-11 Identities = 85/100 (85%) Strand = Plus / Minus Query: 78 acggtgaacttcttctccaccaagaataccaagttcaccgcgggctgcccagccctcccc 137 |||||||||||||||||||||||||| ||||||||| |||| |||||||| | || || Sbjct: 18365 acggtgaacttcttctccaccaagaacaccaagttcgccgccggctgcccgccgctgccg 18306 Query: 138 tgccacatgaagactgtcgttagcccgatggaggatctcc 177 ||||||||||||| | ||| || || |||||||||||| Sbjct: 18305 ggccacatgaagacggccgtctgctcgctggaggatctcc 18266
>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21 Length = 144076 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 1 cgctgggcggcatcggcaacaaggtcaagctcgcctacaccatgctcaacctcccttctt 60 |||| |||||| |||||| |||||||||||||||||||||||||||||||||||| || | Sbjct: 132360 cgctcggcggcgtcggcagcaaggtcaagctcgcctacaccatgctcaacctcccctcct 132301 Query: 61 gggagaa 67 ||||||| Sbjct: 132300 gggagaa 132294 Score = 79.8 bits (40), Expect = 1e-11 Identities = 85/100 (85%) Strand = Plus / Minus Query: 78 acggtgaacttcttctccaccaagaataccaagttcaccgcgggctgcccagccctcccc 137 |||||||||||||||||||||||||| ||||||||| |||| |||||||| | || || Sbjct: 132168 acggtgaacttcttctccaccaagaacaccaagttcgccgccggctgcccgccgctgccg 132109 Query: 138 tgccacatgaagactgtcgttagcccgatggaggatctcc 177 ||||||||||||| | ||| || || |||||||||||| Sbjct: 132108 ggccacatgaagacggccgtctgctcgctggaggatctcc 132069
>ref|XM_517164.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC461186), mRNA Length = 5277 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 gcctagagaggatgaagaagaa 242 |||||||||||||||||||||| Sbjct: 2004 gcctagagaggatgaagaagaa 2025
>emb|AL831962.2|HSM803268 Homo sapiens mRNA; cDNA DKFZp451D112 (from clone DKFZp451D112) Length = 5364 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 gcctagagaggatgaagaagaa 242 |||||||||||||||||||||| Sbjct: 1761 gcctagagaggatgaagaagaa 1782
>gb|AC124009.4| Homo sapiens BAC clone RP11-676K10 from 4, complete sequence Length = 14349 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 gcctagagaggatgaagaagaa 242 |||||||||||||||||||||| Sbjct: 408 gcctagagaggatgaagaagaa 429
>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence Length = 214250 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 gcctagagaggatgaagaagaa 242 |||||||||||||||||||||| Sbjct: 212658 gcctagagaggatgaagaagaa 212679
>gb|BC076678.1| Xenopus tropicalis myosin, heavy polypeptide 13, skeletal muscle, mRNA (cDNA clone MGC:79657 IMAGE:6980329), complete cds Length = 6005 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 tagagaggatgaagaagaacc 244 ||||||||||||||||||||| Sbjct: 5388 tagagaggatgaagaagaacc 5408
>ref|NM_006215.2| Homo sapiens serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 (SERPINA4), mRNA Length = 1678 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 1407 cccagccctcccctgccacat 1387
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 434 ctgtgattttgaatataccattgat 458 ||||||||| ||||||||||||||| Sbjct: 152817 ctgtgatttagaatataccattgat 152793
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 434 ctgtgattttgaatataccattgat 458 ||||||||| ||||||||||||||| Sbjct: 158052 ctgtgatttagaatataccattgat 158028
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 434 ctgtgattttgaatataccattgat 458 ||||||||| ||||||||||||||| Sbjct: 158099 ctgtgatttagaatataccattgat 158075
>gb|BC014992.1| Homo sapiens serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4, mRNA (cDNA clone MGC:23251 IMAGE:4866432), complete cds Length = 1678 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 1407 cccagccctcccctgccacat 1387
>gb|AC124390.4| Mus musculus BAC clone RP24-434C11 from chromosome 12, complete sequence Length = 162663 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 cagtggaagaagaaaacagaa 426 ||||||||||||||||||||| Sbjct: 124447 cagtggaagaagaaaacagaa 124467
>emb|AL592146.8| Human DNA sequence from clone RP11-74C13 on chromosome 1 Contains the SOX13 gene for SOX13 SRY (sex determining region Y)-box 13, two novel genes, a novel gene (FLJ10761), the 3' end of the REN gene for renin and two CpG islands, complete sequence Length = 101862 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 89188 cccagccctcccctgccacat 89168
>emb|AL355365.10| Human DNA sequence from clone RP11-361F15 on chromosome 6 Contains the 3' end of the gene for tomosyn (LOC134957) (contains FLJ30922), a putative novel gene and a Yes-associated protein 1, 65kD (YAP1) pseudogene, complete sequence Length = 162750 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 cagtggaagaagaaaacagaa 426 ||||||||||||||||||||| Sbjct: 7895 cagtggaagaagaaaacagaa 7915
>emb|AL160273.9| Human DNA sequence from clone RP11-366I5 on chromosome 9, complete sequence Length = 159934 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 223 ctagagaggatgaagaagaaccaga 247 |||||||||||||||||||| |||| Sbjct: 147458 ctagagaggatgaagaagaagcaga 147434
>gb|AC165255.2| Mus musculus BAC clone RP23-239B8 from chromosome 13, complete sequence Length = 205903 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 ttatggagcctagagaggatg 234 ||||||||||||||||||||| Sbjct: 11958 ttatggagcctagagaggatg 11978
>emb|BX248760.1|CNSLT1IB3 human full-length cDNA 5-PRIME end of clone CS0DM009YC13 of Fetal liver of Homo sapiens (human) Length = 1601 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 1396 cccagccctcccctgccacat 1376
>ref|NM_001006804.1| Xenopus tropicalis myosin, heavy polypeptide 13, skeletal muscle (myh13), mRNA Length = 6005 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 tagagaggatgaagaagaacc 244 ||||||||||||||||||||| Sbjct: 5388 tagagaggatgaagaagaacc 5408
>gb|AF097905.1| Rana catesbeiana myosin heavy chain (MHC-2) mRNA, partial cds Length = 2258 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 tagagaggatgaagaagaacc 244 ||||||||||||||||||||| Sbjct: 1656 tagagaggatgaagaagaacc 1676
>emb|CR622620.1| full-length cDNA clone CS0DJ009YF17 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1611 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 1394 cccagccctcccctgccacat 1374
>emb|CR605698.1| full-length cDNA clone CS0DM013YO10 of Fetal liver of Homo sapiens (human) Length = 1601 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 1388 cccagccctcccctgccacat 1368
>gb|AC154847.2| Mus musculus BAC clone RP23-38J13 from chromosome 13, complete sequence Length = 200027 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 ttatggagcctagagaggatg 234 ||||||||||||||||||||| Sbjct: 120900 ttatggagcctagagaggatg 120920
>dbj|AB128035.1| Streptococcus dysgalactiae subsp. equisimilis NADase-streptolysin O operon (secE, nusG, nga, orf1, slo), partial and complete cds Length = 6753 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 434 ctgtgattttgaatataccattgat 458 ||||||||| ||||||||||||||| Sbjct: 4559 ctgtgatttagaatataccattgat 4535
>dbj|AB050249.1| Streptococcus dysgalactiae subsp. equisimilis slo gene for streptolysin O, complete cds Length = 1920 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 434 ctgtgattttgaatataccattgat 458 ||||||||| ||||||||||||||| Sbjct: 984 ctgtgatttagaatataccattgat 960
>emb|AL132990.4|CNS01DTY Human chromosome 14 DNA sequence BAC R-262P9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181004 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 158807 cccagccctcccctgccacat 158787
>emb|AL049839.3|CNS0000J Human chromosome 14 DNA sequence BAC R-986E7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214527 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 14755 cccagccctcccctgccacat 14735
>gb|L28101.1|HUMKALLIST Homo sapiens kallistatin (PI4) gene, exons 1-4, complete cds Length = 9618 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 9367 cccagccctcccctgccacat 9347
>gb|AC154684.2| Mus musculus BAC clone RP23-143E1 from 12, complete sequence Length = 219213 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 cagtggaagaagaaaacagaa 426 ||||||||||||||||||||| Sbjct: 15468 cagtggaagaagaaaacagaa 15488
>emb|BX248009.1|CNSLT1I6B human full-length cDNA clone CS0DM007YE13 of Fetal liver of Homo sapiens (human) Length = 1726 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccagccctcccctgccacat 145 ||||||||||||||||||||| Sbjct: 1508 cccagccctcccctgccacat 1488
>dbj|AP006670.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT39I14, TM0368b, complete sequence Length = 48760 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 aagaatttcagaatcctctgc 397 ||||||||||||||||||||| Sbjct: 17384 aagaatttcagaatcctctgc 17364
>dbj|D16825.1|STRSOGENE Streptococcus canis gene for streptolysin O, complete cds Length = 1732 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 434 ctgtgattttgaatataccattgat 458 ||||||||| ||||||||||||||| Sbjct: 798 ctgtgatttagaatataccattgat 774
>dbj|D16824.1|STRO Streptococcus equisimilis gene for streptolysin O, complete cds Length = 1744 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 434 ctgtgattttgaatataccattgat 458 ||||||||| ||||||||||||||| Sbjct: 810 ctgtgatttagaatataccattgat 786
>ref|XM_462537.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G24178g) partial mRNA Length = 720 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 ccttcttgggagaacttgaatctc 77 ||||||||||||| |||||||||| Sbjct: 251 ccttcttgggagatcttgaatctc 228
>gb|AC145991.2| Pan troglodytes BAC clone RP43-170F9 from 7, complete sequence Length = 173879 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 tagagaggatgaagaagaaccaga 247 |||||||||||||||| ||||||| Sbjct: 100759 tagagaggatgaagaataaccaga 100782
>gb|AC166556.2| Spironucleus vortens clone JGIBAWF-5F14, complete sequence Length = 39788 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tcggcaacaaggtcaagctc 32 |||||||||||||||||||| Sbjct: 14474 tcggcaacaaggtcaagctc 14493
>ref|XM_535782.2| PREDICTED: Canis familiaris similar to CG14788-PA (LOC478606), mRNA Length = 2472 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 211 atattatggagcctagagaggatgaaga 238 ||||||| ||||||||||||||||||| Sbjct: 1649 atattataaagcctagagaggatgaaga 1676
>gb|AY368433.1| Triphora trianthophora maturase K-like (matK) gene, partial sequence; chloroplast gene for chloroplast product Length = 1532 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gatcaagaatttcagaatcc 539 |||||||||||||||||||| Sbjct: 993 gatcaagaatttcagaatcc 974
>ref|XM_650239.1| Entamoeba histolytica HM-1:IMSS SNF2 family protein (31.t00013) partial mRNA Length = 2577 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 atgactcttttgttccaatg 353 |||||||||||||||||||| Sbjct: 1546 atgactcttttgttccaatg 1527
>ref|XM_948755.1| Theileria annulata strain Ankara prefoldin subunit 3 (TA06440) partial mRNA Length = 567 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 588 gttgaatatcccattgatga 607 |||||||||||||||||||| Sbjct: 367 gttgaatatcccattgatga 386
>gb|AC079996.5| Homo sapiens BAC clone RP11-713C12 from 7, complete sequence Length = 116690 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 tagagaggatgaagaagaaccaga 247 |||||||||||||||| ||||||| Sbjct: 48980 tagagaggatgaagaataaccaga 49003
>gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, complete sequence Length = 206000 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 gaaaacagaattgctggctg 436 |||||||||||||||||||| Sbjct: 86298 gaaaacagaattgctggctg 86279
>emb|AL590308.8| Human DNA sequence from clone RP11-501K14 on chromosome 6 Contains the 5' end of the REPS1 gene for RALBP1 associated Eps domain containing 1, the gene for hypothetical protein PRO2013 and two CpG islands, complete sequence Length = 100296 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tgatgactcttttgttccaa 351 |||||||||||||||||||| Sbjct: 37938 tgatgactcttttgttccaa 37919
>emb|AL450309.14| Human DNA sequence from clone RP11-478H16 on chromosome 1 Contains the 5' end of the ERO1LB gene for ERO1-like beta (S. cerevisiae), an FK506 binding protein 3, 25kDa (FKBP3) pseudogene, the 5' UTR of a variant of the EDARADD gene for EDAR-associated death domain and three CpG islands, complete sequence Length = 166647 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 cagacactgatgagtttttt 491 |||||||||||||||||||| Sbjct: 129568 cagacactgatgagtttttt 129549
>ref|XM_791326.1| PREDICTED: Strongylocentrotus purpuratus similar to brain and reproductive organ-expressed (TNFRSF1A modulator) isoform 1 (LOC591774), mRNA Length = 1086 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 tccaccaagaataccaagttcacc 116 ||||||||||| |||||||||||| Sbjct: 102 tccaccaagaacaccaagttcacc 79
>gb|AC093711.3| Sus scrofa clone RP44-453O1, complete sequence Length = 178791 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 ccagtggaagaagaaaccag 571 |||||||||||||||||||| Sbjct: 43460 ccagtggaagaagaaaccag 43479
>emb|AL157360.8| Human DNA sequence from clone RP11-111C7 on chromosome 13, complete sequence Length = 148861 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 agtggaagaagaaaacagaa 426 |||||||||||||||||||| Sbjct: 144336 agtggaagaagaaaacagaa 144355
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 ccttcttgggagaacttgaatctc 77 ||||||||||||| |||||||||| Sbjct: 1852349 ccttcttgggagatcttgaatctc 1852372
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ctagagaggatgaagaagaa 242 |||||||||||||||||||| Sbjct: 996797 ctagagaggatgaagaagaa 996816
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tctttgcatcaagaatttca 386 |||||||||||||||||||| Sbjct: 450340 tctttgcatcaagaatttca 450321
>gb|AC087397.10| Homo sapiens chromosome 18, clone RP11-594P16, complete sequence Length = 185912 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 ggaagaagaaaacagaattg 429 |||||||||||||||||||| Sbjct: 95800 ggaagaagaaaacagaattg 95781
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gcaacaaggtcaagctcgcc 35 |||||||||||||||||||| Sbjct: 159976 gcaacaaggtcaagctcgcc 159957
>dbj|AB217768.1| Thrixspermum subulatum chloroplast DNA, similar to matK sequence Length = 1796 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gatcaagaatttcagaatcc 539 |||||||||||||||||||| Sbjct: 1306 gatcaagaatttcagaatcc 1287
>dbj|AB217767.1| Thrixspermum centipeda chloroplast matK gene for maturase K, complete cds Length = 1803 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gatcaagaatttcagaatcc 539 |||||||||||||||||||| Sbjct: 1315 gatcaagaatttcagaatcc 1296
>gb|AE010132.1| Pyrococcus furiosus DSM 3638, section 7 of 173 of the complete genome Length = 11093 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ttgcatcaagaatttcagaa 389 |||||||||||||||||||| Sbjct: 8377 ttgcatcaagaatttcagaa 8358
>ref|XM_692056.1| PREDICTED: Danio rerio similar to CG7319-PC, isoform C (LOC568711), mRNA Length = 646 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 cagtggaagaagaaaacaga 425 |||||||||||||||||||| Sbjct: 137 cagtggaagaagaaaacaga 156
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 cggcatcggcaacaaggtcaagct 31 ||||||||||||| |||||||||| Sbjct: 2596010 cggcatcggcaacgaggtcaagct 2596033
>gb|AC055869.13| Homo sapiens chromosome 8, clone RP11-403C10, complete sequence Length = 182023 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 agtggaagaagaaaacagaa 426 |||||||||||||||||||| Sbjct: 110456 agtggaagaagaaaacagaa 110437
>emb|AJ543941.1|GBO543941 Gomphichis bogotensis plastid matK pseudogene and partial tRNA-Lys gene Length = 1820 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gatcaagaatttcagaatcc 539 |||||||||||||||||||| Sbjct: 1299 gatcaagaatttcagaatcc 1280
>gb|AC005157.1|AC005157 Homo sapiens PAC clone RP5-1108A12 from 14q24.3, complete sequence Length = 164275 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 460 acttcggtgaatcagacactgatg 483 |||||||||||||||||| ||||| Sbjct: 24681 acttcggtgaatcagacaatgatg 24704
>emb|CR848481.2| Xenopus tropicalis finished cDNA, clone TEgg056m20 Length = 1822 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 tcagaatcctctgcagccca 403 |||||||||||||||||||| Sbjct: 642 tcagaatcctctgcagccca 661
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tctttgcatcaagaatttca 386 |||||||||||||||||||| Sbjct: 1725039 tctttgcatcaagaatttca 1725020
>gb|AC110817.6| Mus musculus BAC clone RP23-155B20 from 13, complete sequence Length = 200362 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 acagaattgctggctgtgattttg 444 ||||||||||||||||||| |||| Sbjct: 139468 acagaattgctggctgtgaatttg 139445
>gb|K00814.1|CHKMYHCEA chicken embryonic myosin heavy chain, 3' end of mrna, fragment 1 Length = 81 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 agagaggatgaagaagaacc 244 |||||||||||||||||||| Sbjct: 6 agagaggatgaagaagaacc 25 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,386,488 Number of Sequences: 3902068 Number of extensions: 6386488 Number of successful extensions: 135273 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134926 Number of HSP's gapped (non-prelim): 343 length of query: 668 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 645 effective length of database: 17,143,297,704 effective search space: 11057427019080 effective search space used: 11057427019080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
