ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9l17 |
|---|---|
| Clone Library Name | barley_pub |
>JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylation protein 2B (EC| 1.14.11.-) (Jumonji domain-containing protein 1B) (Nuclear protein 5qNCA) Length = 1761 Score = 53.1 bits (126), Expect = 6e-07 Identities = 24/52 (46%), Positives = 35/52 (67%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI+DQ+ YL + ++ L ++YG++ Q +G+AVFIPAG P QV NL C Sbjct: 1646 PIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSC 1697
>JHD2B_MOUSE (Q6ZPY7) JmjC domain-containing histone demethylation protein 2B (EC| 1.14.11.-) (Jumonji domain-containing protein 1B) Length = 1562 Score = 52.4 bits (124), Expect = 1e-06 Identities = 24/52 (46%), Positives = 35/52 (67%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI+DQ+ YL + ++ L ++YG++ Q +G+AVFIPAG P QV NL C Sbjct: 1447 PIHDQSWYLDQILRKRLFEEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSC 1498
>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) (Thyroid receptor-interacting protein 8) (TRIP-8) Length = 2540 Score = 43.5 bits (101), Expect(2) = 2e-06 Identities = 19/52 (36%), Positives = 32/52 (61%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI DQ+ Y+ + ++ L ++YG+ T Q +G+A+ +PAG QV+N C Sbjct: 2423 PIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSC 2474 Score = 26.9 bits (58), Expect(2) = 2e-06 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = +1 Query: 166 PGALWDVFRRQDVPMLNKYLASNWEELTVSSQAMLSVITRHYSVK 300 PGALW ++ +DV + ++L +S + L V+ H ++ Sbjct: 2387 PGALWHIYAGKDVDKIREFLQK------ISKEQGLEVLPEHDPIR 2425
>JHD2A_HUMAN (Q9Y4C1) JmjC domain-containing histone demethylation protein 2A (EC| 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1321 Score = 50.8 bits (120), Expect = 3e-06 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI+DQ+ YL ++ L +YG++ Q +G+ VFIPAG P QV NL C Sbjct: 1206 PIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSC 1257
>JHD2A_CHICK (Q5ZIX8) JmjC domain-containing histone demethylation protein 2A (EC| 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1325 Score = 50.8 bits (120), Expect = 3e-06 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI+DQ+ YL ++ L +YG++ Q +G+ VFIPAG P QV NL C Sbjct: 1210 PIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSC 1261
>JHD2A_RAT (Q63679) JmjC domain-containing histone demethylation protein 2A (EC| 1.14.11.-) (Jumonji domain-containing protein 1A) (Testis-specific gene A protein) (Zinc-finger protein TSGA) Length = 1214 Score = 50.4 bits (119), Expect = 4e-06 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI+DQ+ YL ++ L +YG++ Q +G+ VFIPAG P QV NL C Sbjct: 1092 PIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSC 1143
>JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylation protein 2A (EC| 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1323 Score = 50.4 bits (119), Expect = 4e-06 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI+DQ+ YL ++ L +YG++ Q +G+ VFIPAG P QV NL C Sbjct: 1208 PIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSC 1259
>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) Length = 2350 Score = 42.7 bits (99), Expect(2) = 4e-06 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI DQ+ Y+ ++ L ++YG+ T Q +G+A+ +PAG QV+N C Sbjct: 2233 PIRDQSWYVNRKLRQRLLEEYGVRACTLIQFLGDAIVLPAGTLHQVQNFHSC 2284 Score = 26.9 bits (58), Expect(2) = 4e-06 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = +1 Query: 166 PGALWDVFRRQDVPMLNKYLASNWEELTVSSQAMLSVITRHYSVK 300 PGALW ++ +DV + ++L +S + L V+ H ++ Sbjct: 2197 PGALWHIYAGKDVDKIREFLQK------ISKEQGLEVLPEHDPIR 2235
>JD2AA_XENLA (Q6IRB8) JmjC domain-containing histone demethylation protein 2A-A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A-A) Length = 1331 Score = 49.7 bits (117), Expect = 6e-06 Identities = 23/52 (44%), Positives = 33/52 (63%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI+DQ+ YL ++ L ++G++ Q +G+AVFIPAG P QV NL C Sbjct: 1216 PIHDQSWYLDNTLRKRLLQEHGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSC 1267 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = +1 Query: 52 LNLDMGEQSPEHTVSKSCGDSVGSCPEQPKSNGLE-RSQPGALWDVFRRQDVPMLNKYLA 228 + + GE E V ++ D G E +E + +PGALW +F +D + ++L Sbjct: 1143 VGIPKGEHDQEQEVIRTIQD--GDADELTIKRYIEFKEKPGALWHIFAAKDTEKIRQFLK 1200 Query: 229 SNWEE 243 EE Sbjct: 1201 KVAEE 1205
>JD2AB_XENLA (Q5HZN1) JmjC domain-containing histone demethylation protein 2A-B| (EC 1.14.11.-) (Jumonji domain-containing protein 1A-B) Length = 1334 Score = 49.3 bits (116), Expect = 8e-06 Identities = 23/52 (44%), Positives = 33/52 (63%) Frame = +2 Query: 371 PIYDQAVYLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNLQVC 526 PI+DQ+ YL ++ L ++G++ Q +G+AVFIPAG P QV NL C Sbjct: 1219 PIHDQSWYLDNILRKRLLQEHGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSC 1270
>HAIR_RAT (P97609) Protein hairless| Length = 1181 Score = 37.4 bits (85), Expect = 0.032 Identities = 18/42 (42%), Positives = 26/42 (61%) Frame = +2 Query: 392 YLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNL 517 YL +R L++++G+ T Q GEAV +PAG P QV+ L Sbjct: 1081 YLDSGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGL 1122
>HAIR_HUMAN (O43593) Protein hairless| Length = 1189 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/42 (42%), Positives = 26/42 (61%) Frame = +2 Query: 392 YLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNL 517 YL +R L++++G+ T Q GEAV +PAG P QV+ L Sbjct: 1089 YLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGL 1130
>HAIR_MOUSE (Q61645) Protein hairless| Length = 1182 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/42 (42%), Positives = 26/42 (61%) Frame = +2 Query: 392 YLKEHHKRVLKDQYGIEPRTFEQHIGEAVFIPAGCPFQVKNL 517 YL +R L++++G+ T Q GEAV +PAG P QV+ L Sbjct: 1082 YLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGL 1123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,014,210 Number of Sequences: 219361 Number of extensions: 1734733 Number of successful extensions: 4584 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4387 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4584 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
