>GOGA1_MOUSE (Q9CW79) Golgin subfamily A member 1 (Golgin-97)|
          Length = 758

 Score = 33.5 bits (75), Expect = 0.53
 Identities = 22/66 (33%), Positives = 36/66 (54%)
 Frame = +1

Query: 175 YGLPLISLTVFGAVGLAHLIRGSKEVTKEKEDMEWEVVEKTKALSRTGRVEGAYKPTKLS 354
           Y LP    T  G VG + L    K++ KEK+D+E +++EK K +    +++      K +
Sbjct: 589 YELPAAEGTPNGEVGASDL----KQLQKEKQDLEQQLIEKNKIMK---QMQQRMLELKKT 641

Query: 355 LEDELK 372
           L+ ELK
Sbjct: 642 LQKELK 647

>UCHL_DROME (P35122) Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)|
           (Ubiquitin thioesterase)
          Length = 227

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 24/100 (24%), Positives = 49/100 (49%)
 Frame = +1

Query: 121 AQQASQFKRWGRKHPFVRYGLPLISLTVFGAVGLAHLIRGSKEVTKEKEDMEWEVVEKTK 300
           A++  + K    +HP   + +   +    G V L H +  +KEV  ++  ++ + +EKT 
Sbjct: 65  AEEHDRIKEVEEQHPEDLFYMRQFTHNACGTVALIHSVANNKEVDIDRGVLK-DFLEKTA 123

Query: 301 ALSRTGRVEGAYKPTKLSLEDELKALQQKVDINSYDYKRI 420
           +LS   R     K  K + + E  AL Q+   N+ +++++
Sbjct: 124 SLSPEERGRALEKDEKFTADHE--ALAQEGQTNAANHEKV 161

>SCP1_BRALA (P04569) Sarcoplasmic calcium-binding proteins I, III, and IV (SCP|
           I, III, IV)
          Length = 185

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 18/56 (32%), Positives = 34/56 (60%)
 Frame = +1

Query: 241 SKEVTKEKEDMEWEVVEKTKALSRTGRVEGAYKPTKLSLEDELKALQQKVDINSYD 408
           +K+ + + ED E E++++ K +++    +  YK  + SLEDE + L+ + DIN  D
Sbjct: 21  NKDGSIQWEDFE-EMIKRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDD 75

>FRDC_VIBVY (Q7MGX5) Fumarate reductase subunit C|
          Length = 127

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
 Frame = +1

Query: 142 KRWGRKHPFVRYG-------LPLISLTVFGAVGLAHLIRG 240
           + W + HPF R+        LPLI  T+F  VGL  L++G
Sbjct: 13  RTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKG 52

>FRDC_VIBVU (Q8DCX3) Fumarate reductase subunit C|
          Length = 127

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
 Frame = +1

Query: 142 KRWGRKHPFVRYG-------LPLISLTVFGAVGLAHLIRG 240
           + W + HPF R+        LPLI  T+F  VGL  L++G
Sbjct: 13  RTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKG 52

>FRDC_VIBCH (Q9KNS3) Fumarate reductase subunit C|
          Length = 127

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
 Frame = +1

Query: 142 KRWGRKHPFVRYG-------LPLISLTVFGAVGLAHLIRG 240
           + W + HPF R+        LPLI  T+F  VGL  L++G
Sbjct: 13  RTWWKDHPFYRFYMVREATVLPLILFTLFLTVGLGSLVKG 52

>YJA3_YEAST (P47081) Hypothetical 14.1 kDa protein in CYR1-OST1 intergenic|
           region
          Length = 118

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +1

Query: 121 AQQASQFKRWGRKHPFVRYGLPLISLTVFGAVGLAHL--IRGSKEVTKEKEDMEWEVVEK 294
           A  A ++K+   KHPF+ +GLP  +  V G+  L+    I+  +   K +E  E ++++ 
Sbjct: 19  ASLAGRYKKALSKHPFLFFGLPFCATIVLGSFWLSSFTAIKYEQGDRKVQEINEEDILKI 78

Query: 295 TKALSRTGRVEGAYKPTKLSLED 363
            K        E  Y+   LS ED
Sbjct: 79  RKNQREFDIKEEYYRLQGLSEED 101

>OPN4_MOUSE (Q9QXZ9) Melanopsin (Opsin-4)|
          Length = 521

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -2

Query: 300 FCFLYDLPFHILLFLCYFFASPYKMS*TNRTKHC------QRNEWKAITNKWMLA 154
           FCF++ LP  I++F CY F            + C      QR +W+ + ++W +A
Sbjct: 239 FCFVFFLPLLIIIF-CYIFIFRAIRETGRACEGCGESPLRQRRQWQRLQSEWKMA 292

>RGP1_YEAST (P16664) Reduced growth phenotype protein (Protein RGP1)|
          Length = 663

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 20/97 (20%), Positives = 39/97 (40%)
 Frame = +1

Query: 130 ASQFKRWGRKHPFVRYGLPLISLTVFGAVGLAHLIRGSKEVTKEKEDMEWEVVEKTKALS 309
           A +FK  G +H    Y   L+++       L    +   +     E+  W +     A  
Sbjct: 35  AFRFKHLGSQHELFNYKEKLLTVDKAVEEKLEQQAKVQDDGEGTMENQTWSLKSLLGAFK 94

Query: 310 RTGRVEGAYKPTKLSLEDELKALQQKVDINSYDYKRI 420
           RTG  E +     + + +E K L++K+    Y ++ +
Sbjct: 95  RTGEPEESVDVDNMKMLNESKMLREKIQKQMYFHQPV 131

>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 552  TLGQHPKELMKKQEEEITPKLLRKSPTH*HDKR 454
            T+    K+L+ K EE+  P+LL KS  H  DK+
Sbjct: 1148 TVSSDHKKLLSKSEEDKKPELLEKSTPHPKDKK 1180

>VF05_VACCC (P21014) 36 kDa major membrane protein precursor|
          Length = 321

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 261 FLCYFFASPYKMS*TNRTKHCQRNEWKAITNKWMLASPSFEL*GLLSNLSS 109
           F CY F+  Y        +H   +EWKA+ N    +S       L ++LSS
Sbjct: 212 FSCYLFSQNYSFHKMLNARHICESEWKALNNNDNASSMPASHNNLANDLSS 262

>SYA_MYCMO (Q6KHK5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 905

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/68 (26%), Positives = 40/68 (58%)
 Frame = +1

Query: 247 EVTKEKEDMEWEVVEKTKALSRTGRVEGAYKPTKLSLEDELKALQQKVDINSYDYKRIPK 426
           E++K K  +E  ++EK K+L +  ++  ++     +L+++ + + + +D    DYK++ K
Sbjct: 732 EISKNKLVLE-NLIEKNKSLFQGYKMNFSWSK---NLDEQNEQITKHIDQARSDYKKLLK 787

Query: 427 QNENK*NK 450
            +ENK  K
Sbjct: 788 NSENKLEK 795

>FRDC_VIBPA (Q87KY2) Fumarate reductase subunit C|
          Length = 127

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
 Frame = +1

Query: 142 KRWGRKHPFVRYG-------LPLISLTVFGAVGLAHLIRG 240
           + W + HPF R+        LPLI  T+F   GL  L++G
Sbjct: 13  RTWWKNHPFYRFYMLREATVLPLILFTLFLTFGLGCLVKG 52

>CN112_MOUSE (Q9CR63) Protein C14orf112 homolog precursor|
          Length = 106

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = +1

Query: 154 RKHPFVRYGLPLISLTVFGAVGLAHLIRGSKEVTKEKEDMEWEVVEKTKALSRTGRVEGA 333
           RK+  +RYG+P++ L V G+ GL    +   +    K D E E   K   ++    +E  
Sbjct: 11  RKNKTLRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKIDPELEKKLKVNKIT----LESE 66

Query: 334 YKPTKLSLEDELKALQ 381
           Y+  K S  +  K ++
Sbjct: 67  YEKIKDSTFENWKNIR 82

>MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle|
          Length = 1935

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = +1

Query: 226  HLIRGSKEVTKEKEDMEWEVVEKTKALSRTGRVEGAYKPTKLSLEDELKALQQKVD---- 393
            +L R  +++ KEK + + E+ + T  +    + +   +    +LED+L  ++ K D    
Sbjct: 1210 NLQRVKQKLEKEKSEYKMEIDDLTSNMEAVAKAKANLEKMCRTLEDQLSEIKTKSDENVR 1269

Query: 394  -INSYDYKRIPKQNEN 438
             +N  + +R   Q EN
Sbjct: 1270 QLNDMNAQRARLQTEN 1285

>TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 829

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 250 VTKEKEDMEWEVVEK-TKALSRTGRVEGAYKPTKLSLEDELKALQQKVDINSYDYKRIPK 426
           V  E ED  + V  K  KA+ R    +  YKP K+  ED+ K  ++K +      K+  K
Sbjct: 179 VKDEPEDQGFYVSPKENKAMKRPREDDEDYKPKKIKSEDDKKGKKRKQEEEDIKPKKKSK 238

Query: 427 QNENK 441
              N+
Sbjct: 239 AKGNE 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,707,138
Number of Sequences: 219361
Number of extensions: 1553434
Number of successful extensions: 4746
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4742
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)