ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9l13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 280 5e-72
2dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic D... 280 5e-72
3ref|NM_114563.2| Arabidopsis thaliana ATP binding / ATP-dependen... 137 5e-29
4emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, B... 72 2e-09
5emb|AL096859.2|ATT6H20 Arabidopsis thaliana DNA chromosome 3, BA... 72 2e-09
6ref|XM_734488.1| Plasmodium chabaudi chabaudi ATP dependent RNA ... 52 0.002
7ref|XM_965315.1| PREDICTED: Tribolium castaneum similar to CG415... 52 0.002
8ref|XM_720778.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 44 0.56
9ref|XM_724595.1| Plasmodium yoelii yoelii str. 17XNL Homo sapien... 44 0.56
10ref|XM_675259.1| Plasmodium berghei strain ANKA ATP dependent RN... 44 0.56
11emb|BX901918.12| Zebrafish DNA sequence from clone DKEY-189N19 i... 44 0.56
12gb|AC003058.3| Arabidopsis thaliana chromosome 2 clone F27F23 ma... 44 0.56
13gb|AC002392.3| Arabidopsis thaliana chromosome 2 clone T20K24 ma... 44 0.56
14ref|NM_127481.1| Arabidopsis thaliana unknown protein AT2G19240 ... 42 2.2
15gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 2.2
16gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, com... 42 2.2
17ref|XM_568604.1| Cryptococcus neoformans var. neoformans JEC21 A... 42 2.2
18ref|XM_643805.1| Entamoeba histolytica HM-1:IMSS DEAD/DEAH box h... 42 2.2
19ref|XM_647019.1| Entamoeba histolytica HM-1:IMSS DEAD/DEAH box h... 42 2.2
20emb|AL714022.6| Human DNA sequence from clone RP11-91I11 on chro... 42 2.2
21gb|AC021075.11|AC021075 Homo sapiens 3 BAC RP11-242C15 (Roswell ... 42 2.2
22gb|AC115699.9| Mus musculus chromosome 15, clone RP24-247B18, co... 42 2.2
23emb|AL845285.5| Mouse DNA sequence from clone RP23-167M2 on chro... 42 2.2
24gb|AC161212.9| Mus musculus chromosome 3, clone RP24-267M11, com... 40 8.7
25gb|AC092229.2| Drosophila melanogaster clone BACR23I04, complete... 40 8.7
26ref|XM_422497.1| PREDICTED: Gallus gallus similar to barttin (LO... 40 8.7
27ref|XM_651086.1| Entamoeba histolytica HM-1:IMSS ubiquitin carbo... 40 8.7
28gb|AC004920.2| Homo sapiens PAC clone RP5-898O18 from 7, complet... 40 8.7
29emb|AL627106.8| Human DNA sequence from clone RP11-7K11 on chrom... 40 8.7
30emb|AL445243.3| Human DNA sequence from clone RP11-538C21 on chr... 40 8.7
31ref|XM_784749.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 8.7
32gb|AC145871.4| Pan troglodytes BAC clone RP43-6N15 from chromoso... 40 8.7
33gb|AC118231.9| Mus musculus chromosome 5, clone RP23-462J24, com... 40 8.7
34emb|CR407219.1| Gallus gallus finished cDNA, clone ChEST791l13 40 8.7
35gb|AF187278.1| Picea abies clone 15d2F gypsy-like Alisei family ... 40 8.7
36gb|AC107210.5| Homo sapiens BAC clone RP11-70M19 from 4, complet... 40 8.7
37gb|AC020604.9| Homo sapiens BAC clone RP11-536C12 from 2, comple... 40 8.7
38dbj|BS000102.1| Pan troglodytes chromosome 22 clone:RP43-107D21,... 40 8.7
39gb|AC110033.9| Mus musculus chromosome 1, clone RP23-117O18, com... 40 8.7
40gb|AE003647.3| Drosophila melanogaster chromosome 2L, section 56... 40 8.7
41dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.7
42gb|AC108796.10| Mus musculus chromosome 1, clone RP23-349L18, co... 40 8.7
43gb|AC121139.20| Mus musculus chromosome 5, clone RP23-429G1, com... 40 8.7
44emb|AL935053.6| Zebrafish DNA sequence from clone CH211-162M14, ... 40 8.7
45dbj|D12474.1|YSACPGK Candida maltosa C-PGK1 gene for phosphoglyc... 40 8.7
46dbj|AP001340.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 8.7 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  280 bits (141), Expect = 5e-72
 Identities = 228/257 (88%)
 Strand = Plus / Minus

                                                                           
Query: 169     gtgtttgatactttaaggaagtttgatggaaaggaacatcgaaggttacttccaggggag 228
               ||||||||| | ||||| |||||||||||||| |||||||| | ||||||||||||||||
Sbjct: 3242794 gtgtttgattccttaagaaagtttgatggaaaagaacatcggaagttacttccaggggag 3242735

                                                                           
Query: 229     tatattcaaatggctggacgagctggtaggagaggactagataccataggtacagtgata 288
               |||||||||||||| || ||||||||||||||||| || |||| ||| ||||||||||| 
Sbjct: 3242734 tatattcaaatggccgggcgagctggtaggagagggcttgataacattggtacagtgatc 3242675

                                                                           
Query: 289     atgatgtgccgagatgaaattcctgaagaaagtgatttgaaaaatcttcttgttggaaaa 348
                | ||||| || ||||||||||| ||||||||||||||||| ||| |  |||||||||||
Sbjct: 3242674 gttatgtgtcgtgatgaaattcccgaagaaagtgatttgaagaatttgattgttggaaaa 3242615

                                                                           
Query: 349     ccaactcgactggaatctcagtttcgactaacatacactatgatactacatcttttacgt 408
               ||||||||||| |||||||| |||||  ||||||||||||||||||| |||||| |||||
Sbjct: 3242614 ccaactcgactagaatctcaatttcggttaacatacactatgatactgcatcttctacgt 3242555

                                
Query: 409     gtggaggaacttaaggt 425
               ||||||||||| |||||
Sbjct: 3242554 gtggaggaactcaaggt 3242538



 Score =  153 bits (77), Expect = 8e-34
 Identities = 101/109 (92%)
 Strand = Plus / Minus

                                                                           
Query: 422     aggtggaggacatgcttaagagaagtttcgcagaattccatgcacaaaaggatttgcctg 481
               |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 3241835 aggtggaggacatgctaaagagaagttttgcagaattccatgcacaaaagaatttgcctg 3241776

                                                                
Query: 482     agaaggaaaagctgcttctgcaaatgctacgtcaacctacaaagacaat 530
               ||||||||||| |||||||||| ||||| |||||||| || ||||||||
Sbjct: 3241775 agaaggaaaagttgcttctgcagatgcttcgtcaacccacgaagacaat 3241727



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                           
Query: 33      attggagttcaccatgctgggcttcttcctattgtgaaagaagtagttgagatgctgttt 92
               |||||||| ||||||||||| ||||||||||| || |||||||| ||||| |||||||||
Sbjct: 3244279 attggagtacaccatgctggacttcttcctatcgtcaaagaagttgttgaaatgctgttt 3244220

                    
Query: 93      tgtcg 97
               |||||
Sbjct: 3244219 tgtcg 3244215



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                                  
Query: 117     ttttccaccgagnacatttgctatgggtgttaatgctcccgcaagaacggt 167
               |||||||| ||| |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 3243539 ttttccactgag-acatttgcgatgggcgttaatgctccagcaaggacggt 3243490
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>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1103G11
          Length = 182931

 Score =  280 bits (141), Expect = 5e-72
 Identities = 228/257 (88%)
 Strand = Plus / Minus

                                                                          
Query: 169    gtgtttgatactttaaggaagtttgatggaaaggaacatcgaaggttacttccaggggag 228
              ||||||||| | ||||| |||||||||||||| |||||||| | ||||||||||||||||
Sbjct: 114981 gtgtttgattccttaagaaagtttgatggaaaagaacatcggaagttacttccaggggag 114922

                                                                          
Query: 229    tatattcaaatggctggacgagctggtaggagaggactagataccataggtacagtgata 288
              |||||||||||||| || ||||||||||||||||| || |||| ||| ||||||||||| 
Sbjct: 114921 tatattcaaatggccgggcgagctggtaggagagggcttgataacattggtacagtgatc 114862

                                                                          
Query: 289    atgatgtgccgagatgaaattcctgaagaaagtgatttgaaaaatcttcttgttggaaaa 348
               | ||||| || ||||||||||| ||||||||||||||||| ||| |  |||||||||||
Sbjct: 114861 gttatgtgtcgtgatgaaattcccgaagaaagtgatttgaagaatttgattgttggaaaa 114802

                                                                          
Query: 349    ccaactcgactggaatctcagtttcgactaacatacactatgatactacatcttttacgt 408
              ||||||||||| |||||||| |||||  ||||||||||||||||||| |||||| |||||
Sbjct: 114801 ccaactcgactagaatctcaatttcggttaacatacactatgatactgcatcttctacgt 114742

                               
Query: 409    gtggaggaacttaaggt 425
              ||||||||||| |||||
Sbjct: 114741 gtggaggaactcaaggt 114725



 Score =  153 bits (77), Expect = 8e-34
 Identities = 101/109 (92%)
 Strand = Plus / Minus

                                                                          
Query: 422    aggtggaggacatgcttaagagaagtttcgcagaattccatgcacaaaaggatttgcctg 481
              |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 114022 aggtggaggacatgctaaagagaagttttgcagaattccatgcacaaaagaatttgcctg 113963

                                                               
Query: 482    agaaggaaaagctgcttctgcaaatgctacgtcaacctacaaagacaat 530
              ||||||||||| |||||||||| ||||| |||||||| || ||||||||
Sbjct: 113962 agaaggaaaagttgcttctgcagatgcttcgtcaacccacgaagacaat 113914



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                          
Query: 33     attggagttcaccatgctgggcttcttcctattgtgaaagaagtagttgagatgctgttt 92
              |||||||| ||||||||||| ||||||||||| || |||||||| ||||| |||||||||
Sbjct: 116466 attggagtacaccatgctggacttcttcctatcgtcaaagaagttgttgaaatgctgttt 116407

                   
Query: 93     tgtcg 97
              |||||
Sbjct: 116406 tgtcg 116402



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                                 
Query: 117    ttttccaccgagnacatttgctatgggtgttaatgctcccgcaagaacggt 167
              |||||||| ||| |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 115726 ttttccactgag-acatttgcgatgggcgttaatgctccagcaaggacggt 115677
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>ref|NM_114563.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
            nucleic acid binding AT3G46960 mRNA, complete cds
          Length = 4128

 Score =  137 bits (69), Expect = 5e-29
 Identities = 196/237 (82%), Gaps = 1/237 (0%)
 Strand = Plus / Plus

                                                                        
Query: 30   ggaattggagttcaccatgctgggcttcttcctattgtgaaagaagtagttgagatgctg 89
            |||||||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| ||||| 
Sbjct: 2113 ggaattggtgttcatcatgctgggctgcttccaattgtaaaggaagttgttgaaatgctt 2172

                                                                        
Query: 90   ttttgtcgcggtgtgattaaggtactgttttccaccgagnacatttgctatgggtgttaa 149
            ||||| || ||||| |||||||| || ||||| || ||| |||||||| ||||| |||||
Sbjct: 2173 ttttgccgtggtgttattaaggtgctattttcaacggag-acatttgccatgggggttaa 2231

                                                                        
Query: 150  tgctcccgcaagaacggttgtgtttgatactttaaggaagtttgatggaaaggaacatcg 209
            |||||| || |||||||| || |||||| |||| |||||||||||||| ||||||  | |
Sbjct: 2232 tgctccagctagaacggtcgtttttgatgctttgaggaagtttgatggcaaggaatttag 2291

                                                                     
Query: 210  aaggttacttccaggggagtatattcaaatggctggacgagctggtaggagaggact 266
            |   || ||||| || ||||| | ||||||||| ||||| ||||| || ||||||||
Sbjct: 2292 acaattgcttcctggagagtacactcaaatggcaggacgtgctggcagaagaggact 2348



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                        
Query: 356  gactggaatctcagtttcgactaacatacactatgatactacatcttttacgtgtggagg 415
            |||| |||||||||||||||||||| ||||  ||||| || |||||||||||||| || |
Sbjct: 2438 gactagaatctcagtttcgactaacctacataatgatcctccatcttttacgtgttgaag 2497

                                                             
Query: 416  aacttaaggtggaggacatgcttaagagaagtttcgcagaattccatgc 464
            || | ||||||||||||||||| || |||||||| || ||||| |||||
Sbjct: 2498 aattaaaggtggaggacatgctgaaaagaagttttgctgaatttcatgc 2546
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>emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, BAC clone F13I12
          Length = 140680

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                         
Query: 30    ggaattggagttcaccatgctgggcttcttcctattgtgaaagaagtagttgagatgctg 89
             |||||||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| ||||| 
Sbjct: 11388 ggaattggtgttcatcatgctgggctgcttccaattgtaaaggaagttgttgaaatgctt 11329

                                     
Query: 90    ttttgtcgcggtgtgattaaggta 113
             ||||| || ||||| |||||||||
Sbjct: 11328 ttttgccgtggtgttattaaggta 11305



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 356   gactggaatctcagtttcgactaacatacactatgatactacatcttttacgtgt 410
             |||| |||||||||||||||||||| ||||  ||||| || ||||||||||||||
Sbjct: 10728 gactagaatctcagtttcgactaacctacataatgatcctccatcttttacgtgt 10674



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 77/95 (81%)
 Strand = Plus / Minus

                                                                         
Query: 172   tttgatactttaaggaagtttgatggaaaggaacatcgaaggttacttccaggggagtat 231
             |||||| |||| |||||||||||||| ||||||  | ||   || ||||| || ||||| 
Sbjct: 10912 tttgatgctttgaggaagtttgatggcaaggaatttagacaattgcttcctggagagtac 10853

                                                
Query: 232   attcaaatggctggacgagctggtaggagaggact 266
             | ||||||||| ||||| ||||| || ||||||||
Sbjct: 10852 actcaaatggcaggacgtgctggcagaagaggact 10818



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 422   aggtggaggacatgcttaagagaagtttcgcagaattccatgc 464
             |||||||||||||||| || |||||||| || ||||| |||||
Sbjct: 10560 aggtggaggacatgctgaaaagaagttttgctgaatttcatgc 10518



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 130   acatttgctatgggtgttaatgctcccgcaagaacggt 167
             |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 11118 acatttgccatgggggttaatgctccagctagaacggt 11081
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>emb|AL096859.2|ATT6H20 Arabidopsis thaliana DNA chromosome 3, BAC clone T6H20
          Length = 98461

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 30  ggaattggagttcaccatgctgggcttcttcctattgtgaaagaagtagttgagatgctg 89
           |||||||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| ||||| 
Sbjct: 354 ggaattggtgttcatcatgctgggctgcttccaattgtaaaggaagttgttgaaatgctt 413

                                   
Query: 90  ttttgtcgcggtgtgattaaggta 113
           ||||| || ||||| |||||||||
Sbjct: 414 ttttgccgtggtgttattaaggta 437



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                   
Query: 356  gactggaatctcagtttcgactaacatacactatgatactacatcttttacgtgt 410
            |||| |||||||||||||||||||| ||||  ||||| || ||||||||||||||
Sbjct: 1014 gactagaatctcagtttcgactaacctacataatgatcctccatcttttacgtgt 1068



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                       
Query: 422  aggtggaggacatgcttaagagaagtttcgcagaattccatgc 464
            |||||||||||||||| || |||||||| || ||||| |||||
Sbjct: 1182 aggtggaggacatgctgaaaagaagttttgctgaatttcatgc 1224



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 77/95 (81%)
 Strand = Plus / Plus

                                                                       
Query: 172 tttgatactttaaggaagtttgatggaaaggaacatcgaaggttacttccaggggagtat 231
           |||||| |||| |||||||||||||| ||||||  | ||   || ||||| || ||||| 
Sbjct: 830 tttgatgctttgaggaagtttgatggcaaggaatttagacaattgcttcctggagagtac 889

                                              
Query: 232 attcaaatggctggacgagctggtaggagaggact 266
           | ||||||||| ||||| ||||| || ||||||||
Sbjct: 890 actcaaatggcaggacgtgctggcagaagaggact 924



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 130 acatttgctatgggtgttaatgctcccgcaagaacggt 167
           |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 624 acatttgccatgggggttaatgctccagctagaacggt 661
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>ref|XM_734488.1| Plasmodium chabaudi chabaudi ATP dependent RNA helicase,
           (PC000378.05.0) partial mRNA
          Length = 1434

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 229 tatattcaaatggctggacgagctggtaggagaggactagat 270
           |||||||||||||| ||| ||||||| || ||||||||||||
Sbjct: 49  tatattcaaatggcgggaagagctggaagaagaggactagat 90
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>ref|XM_965315.1| PREDICTED: Tribolium castaneum similar to CG4152-PA (LOC658969), mRNA
          Length = 3159

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 221  caggggagtatattcaaatggctggacgagctgg 254
            |||||||||||||||||||| ||||||| |||||
Sbjct: 1547 caggggagtatattcaaatgtctggacgcgctgg 1580
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>ref|XM_720778.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05414)
           partial mRNA
          Length = 390

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 171 gtttgatactttaaggaagttt 192
           ||||||||||||||||||||||
Sbjct: 24  gtttgatactttaaggaagttt 45
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>ref|XM_724595.1| Plasmodium yoelii yoelii str. 17XNL Homo sapiens KIAA0052 protein
            (PY01861) partial mRNA
          Length = 3930

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 229  tatattcaaatggctggacgagctggtaggagaggactagat 270
            |||||||||||||| ||| ||||||| || |||||| |||||
Sbjct: 1783 tatattcaaatggcaggaagagctggaagaagaggattagat 1824
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>ref|XM_675259.1| Plasmodium berghei strain ANKA ATP dependent RNA helicase,
            (PB001112.02.0) partial mRNA
          Length = 3900

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 229  tatattcaaatggctggacgagctggtaggagaggactagat 270
            |||||||||||||| ||| ||||||| || |||||| |||||
Sbjct: 1783 tatattcaaatggcgggaagagctggaagaagaggattagat 1824
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>emb|BX901918.12| Zebrafish DNA sequence from clone DKEY-189N19 in linkage group 2,
              complete sequence
          Length = 171438

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 198    aaaggaacatcgaaggttactt 219
              ||||||||||||||||||||||
Sbjct: 113467 aaaggaacatcgaaggttactt 113488
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>gb|AC003058.3| Arabidopsis thaliana chromosome 2 clone F27F23 map CIC06E08, complete
            sequence
          Length = 97495

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 335  ttcttgttggaaaaccaactcgactg 360
            ||||||||||||||||||||| ||||
Sbjct: 7963 ttcttgttggaaaaccaactcaactg 7988



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 335   ttcttgttggaaaaccaactc 355
             |||||||||||||||||||||
Sbjct: 13559 ttcttgttggaaaaccaactc 13579
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>gb|AC002392.3| Arabidopsis thaliana chromosome 2 clone T20K24 map CIC06E08, complete
              sequence
          Length = 105528

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 335    ttcttgttggaaaaccaactcgactg 360
              ||||||||||||||||||||| ||||
Sbjct: 103849 ttcttgttggaaaaccaactcaactg 103874
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>ref|NM_127481.1| Arabidopsis thaliana unknown protein AT2G19240 mRNA, complete cds
          Length = 2523

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  ttcttgttggaaaaccaactc 355
            |||||||||||||||||||||
Sbjct: 2394 ttcttgttggaaaaccaactc 2374
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>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete
              sequence
          Length = 762694

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 319    agtgatttgaaaaatcttctt 339
              |||||||||||||||||||||
Sbjct: 224839 agtgatttgaaaaatcttctt 224859
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>gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, complete sequence
          Length = 172683

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 581   gtgagatctttggatgctatg 601
             |||||||||||||||||||||
Sbjct: 14029 gtgagatctttggatgctatg 14049
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>ref|XM_568604.1| Cryptococcus neoformans var. neoformans JEC21 ABC transporter PMR5
           (CNN00680) partial mRNA
          Length = 4388

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 319 agtgatttgaaaaatcttctt 339
           |||||||||||||||||||||
Sbjct: 333 agtgatttgaaaaatcttctt 313
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>ref|XM_643805.1| Entamoeba histolytica HM-1:IMSS DEAD/DEAH box helicase, putative
            (373.t00010) partial mRNA
          Length = 1461

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 220  ccaggggagtatattcaaatggctggacgagctggtaggagagga 264
            ||||| |||||||||||||||  |||| ||||||| || ||||||
Sbjct: 1396 ccaggagagtatattcaaatgagtggaagagctggaagaagagga 1440
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>ref|XM_647019.1| Entamoeba histolytica HM-1:IMSS DEAD/DEAH box helicase, putative
            (131.t00001) partial mRNA
          Length = 2934

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 220  ccaggggagtatattcaaatggctggacgagctggtaggagagga 264
            ||||| |||||||||||||||  |||| ||||||| || ||||||
Sbjct: 1396 ccaggagagtatattcaaatgagtggaagagctggaagaagagga 1440
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>emb|AL714022.6| Human DNA sequence from clone RP11-91I11 on chromosome 1 Contains a
             ribosomal protein L39 (RPL39) pseudogene, complete
             sequence
          Length = 63059

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 179   ctttaaggaagtttgatggaa 199
             |||||||||||||||||||||
Sbjct: 46471 ctttaaggaagtttgatggaa 46451
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>gb|AC021075.11|AC021075 Homo sapiens 3 BAC RP11-242C15 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 63632

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 179 ctttaaggaagtttgatggaa 199
           |||||||||||||||||||||
Sbjct: 86  ctttaaggaagtttgatggaa 106
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>gb|AC115699.9| Mus musculus chromosome 15, clone RP24-247B18, complete sequence
          Length = 169003

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 581   gtgagatctttggatgctatg 601
             |||||||||||||||||||||
Sbjct: 44779 gtgagatctttggatgctatg 44759
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>emb|AL845285.5| Mouse DNA sequence from clone RP23-167M2 on chromosome 2, complete
             sequence
          Length = 143280

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 311   ctgaagaaagtgatttgaaaa 331
             |||||||||||||||||||||
Sbjct: 57235 ctgaagaaagtgatttgaaaa 57215
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>gb|AC161212.9| Mus musculus chromosome 3, clone RP24-267M11, complete sequence
          Length = 147921

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   aaggaacatcgaaggttact 218
             ||||||||||||||||||||
Sbjct: 78105 aaggaacatcgaaggttact 78086
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>gb|AC092229.2| Drosophila melanogaster clone BACR23I04, complete sequence
          Length = 202042

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   ggaaaagctgcttctgcaaa 505
             ||||||||||||||||||||
Sbjct: 56116 ggaaaagctgcttctgcaaa 56097
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>ref|XM_422497.1| PREDICTED: Gallus gallus similar to barttin (LOC424663), mRNA
          Length = 1276

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 39  gttcaccatgctgggcttcttcct 62
           ||||| ||||||||||||||||||
Sbjct: 333 gttcatcatgctgggcttcttcct 356
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>ref|XM_651086.1| Entamoeba histolytica HM-1:IMSS ubiquitin carboxyl-terminal hydrolase
            (16.t00011) partial mRNA
          Length = 2643

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 609  aagttgatctttggagtact 628
            ||||||||||||||||||||
Sbjct: 2186 aagttgatctttggagtact 2205
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>gb|AC004920.2| Homo sapiens PAC clone RP5-898O18 from 7, complete sequence
          Length = 103421

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 426  ggaggacatgcttaagagaa 445
            ||||||||||||||||||||
Sbjct: 6619 ggaggacatgcttaagagaa 6600
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>emb|AL627106.8| Human DNA sequence from clone RP11-7K11 on chromosome 1, complete
            sequence
          Length = 41244

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 479  ctgagaaggaaaagctgcttctgc 502
            ||||||||||||||| ||||||||
Sbjct: 2245 ctgagaaggaaaagcagcttctgc 2268
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>emb|AL445243.3| Human DNA sequence from clone RP11-538C21 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 150937

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 299    gagatgaaattcctgaagaaagtg 322
              |||||||||| |||||||||||||
Sbjct: 149810 gagatgaaatgcctgaagaaagtg 149833
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>ref|XM_784749.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC584905 (LOC584905), mRNA
          Length = 1293

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 43  accatgctgggcttcttcct 62
           ||||||||||||||||||||
Sbjct: 239 accatgctgggcttcttcct 220
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>gb|AC145871.4| Pan troglodytes BAC clone RP43-6N15 from chromosome 7, complete
             sequence
          Length = 230197

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   ggaggacatgcttaagagaa 445
             ||||||||||||||||||||
Sbjct: 69118 ggaggacatgcttaagagaa 69137
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>gb|AC118231.9| Mus musculus chromosome 5, clone RP23-462J24, complete sequence
          Length = 186083

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   ggagaggactagataccata 276
             ||||||||||||||||||||
Sbjct: 17923 ggagaggactagataccata 17904
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>emb|CR407219.1| Gallus gallus finished cDNA, clone ChEST791l13
          Length = 696

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 486 ggaaaagctgcttctgcaaa 505
           ||||||||||||||||||||
Sbjct: 651 ggaaaagctgcttctgcaaa 632
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>gb|AF187278.1| Picea abies clone 15d2F gypsy-like Alisei family retrotransposon,
           5' region
          Length = 371

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 aggaagtttgatggaaagga 203
           ||||||||||||||||||||
Sbjct: 61  aggaagtttgatggaaagga 42
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>gb|AC107210.5| Homo sapiens BAC clone RP11-70M19 from 4, complete sequence
          Length = 112895

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   ttccatgcacaaaaggattt 476
             ||||||||||||||||||||
Sbjct: 22365 ttccatgcacaaaaggattt 22384
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>gb|AC020604.9| Homo sapiens BAC clone RP11-536C12 from 2, complete sequence
          Length = 130506

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   acatgcttaagagaagtttc 450
             ||||||||||||||||||||
Sbjct: 35522 acatgcttaagagaagtttc 35503
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>dbj|BS000102.1| Pan troglodytes chromosome 22 clone:RP43-107D21, map 22, complete
             sequences
          Length = 65478

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   agaaagtgatttgaaaaatc 334
             ||||||||||||||||||||
Sbjct: 52436 agaaagtgatttgaaaaatc 52417
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>gb|AC110033.9| Mus musculus chromosome 1, clone RP23-117O18, complete sequence
          Length = 260404

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 483    gaaggaaaagctgcttctgc 502
              ||||||||||||||||||||
Sbjct: 116183 gaaggaaaagctgcttctgc 116164
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>gb|AE003647.3| Drosophila melanogaster chromosome 2L, section 56 of 83 of the complete
              sequence
          Length = 261949

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    ggaaaagctgcttctgcaaa 505
              ||||||||||||||||||||
Sbjct: 125357 ggaaaagctgcttctgcaaa 125338
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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   agaaagtgatttgaaaaatc 334
             ||||||||||||||||||||
Sbjct: 87721 agaaagtgatttgaaaaatc 87702
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>gb|AC108796.10| Mus musculus chromosome 1, clone RP23-349L18, complete sequence
          Length = 188713

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 483    gaaggaaaagctgcttctgc 502
              ||||||||||||||||||||
Sbjct: 130702 gaaggaaaagctgcttctgc 130683
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>gb|AC121139.20| Mus musculus chromosome 5, clone RP23-429G1, complete sequence
          Length = 206249

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    ggagaggactagataccata 276
              ||||||||||||||||||||
Sbjct: 171773 ggagaggactagataccata 171754
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>emb|AL935053.6| Zebrafish DNA sequence from clone CH211-162M14, complete sequence
          Length = 138341

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    tgaaattcctgaagaaagtg 322
              ||||||||||||||||||||
Sbjct: 128109 tgaaattcctgaagaaagtg 128128
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>dbj|D12474.1|YSACPGK Candida maltosa C-PGK1 gene for phosphoglycerate kinase, complete cds
          Length = 2594

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 330  aaatcttcttgttggaaaac 349
            ||||||||||||||||||||
Sbjct: 1115 aaatcttcttgttggaaaac 1134
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>dbj|AP001340.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B2289H10,
             LL56-APP region, complete sequence
          Length = 58771

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   agaaagtgatttgaaaaatc 334
             ||||||||||||||||||||
Sbjct: 24530 agaaagtgatttgaaaaatc 24511


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,784,643
Number of Sequences: 3902068
Number of extensions: 5784643
Number of successful extensions: 103581
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103446
Number of HSP's gapped (non-prelim): 134
length of query: 638
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 615
effective length of database: 17,143,297,704
effective search space: 10543128087960
effective search space used: 10543128087960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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