ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9l02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111846.1| Zea mays CL50620_1 mRNA sequence 107 4e-20
2ref|NM_197238.1| Oryza sativa (japonica cultivar-group) putative... 105 2e-19
3gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 105 2e-19
4gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 105 2e-19
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
6dbj|AK064441.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 105 2e-19
8gb|AY224548.1| Oryza sativa (japonica cultivar-group) isolate 24... 101 3e-18
9gb|AF240003.1|AF240003 Mus musculus adenine nucleotide transloca... 44 0.51
10emb|AL450399.16| Mouse DNA sequence from clone RP23-286I5 on chr... 44 0.51
11gb|AC019068.8| Homo sapiens BAC clone RP11-201F21 from 2, comple... 42 2.0
12gb|AC024267.18| Homo sapiens chromosome 17, clone RP11-20B24, co... 42 2.0
13gb|U31545.1|CRU31545 Chlamydomonas reinhardtii gamma-tubulin gen... 42 2.0
14gb|AF013109.1|AF013109 Chlamydomonas reinhardtii gamma tubulin (... 42 2.0
15ref|NM_102056.2| Arabidopsis thaliana unknown protein AT1G22060 ... 40 7.9
16ref|NM_102055.1| Arabidopsis thaliana unknown protein AT1G22050 ... 40 7.9
17ref|NM_203511.1| Danio rerio flj13639 (flj13639), mRNA 40 7.9
18gb|AC010846.13| Drosophila melanogaster clone BACR13G13, complet... 40 7.9
19ref|XM_420050.1| PREDICTED: Gallus gallus similar to polycystic ... 40 7.9
20gb|AC126593.5| Rattus norvegicus 13 BAC CH230-103N15 (Children's... 40 7.9
21ref|NM_198082.2| Homo sapiens coiled-coil domain containing 57 (... 40 7.9
22ref|XM_855041.1| PREDICTED: Canis familiaris similar to subcommi... 40 7.9
23ref|XM_844806.1| PREDICTED: Canis familiaris similar to subcommi... 40 7.9
24gb|BC110997.1| Homo sapiens coiled-coil domain containing 57, mR... 40 7.9
25gb|BC040264.1| Homo sapiens coiled-coil domain containing 57, mR... 40 7.9
26gb|AC122252.4| Mus musculus BAC clone RP23-170E7 from chromosome... 40 7.9
27gb|AC002303.1|HUAC002303 Homo sapiens Chromosome 16 BAC clone CI... 40 7.9
28gb|AY316533.1| Danio rerio short chain dehydrogenase/reductase m... 40 7.9
29ref|XM_505416.1| Yarrowia lipolytica CLIB122, YALI0F14509g predi... 40 7.9
30gb|AC132872.17| Homo sapiens chromosome 17, clone RP13-516M14, c... 40 7.9
31gb|BC114254.1| Danio rerio flj13639, mRNA (cDNA clone MGC:136710... 40 7.9
32ref|NM_132901.2| Drosophila melanogaster CG4420-RA (CG4420), mRNA 40 7.9
33gb|AC010920.11|AC010920 Drosophila melanogaster, chromosome X, r... 40 7.9
34gb|BT006019.1| Drosophila melanogaster GM04721 full insert cDNA 40 7.9
35gb|AC069252.4|AC069252 Genomic sequence for Arabidopsis thaliana... 40 7.9
36emb|AJ327272.1|HSA327272 Homo sapiens genomic sequence surroundi... 40 7.9
37gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 ... 40 7.9
38gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome 40 7.9
39emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 7.9 
>gb|AY111846.1| Zea mays CL50620_1 mRNA sequence
          Length = 583

 Score =  107 bits (54), Expect = 4e-20
 Identities = 129/154 (83%)
 Strand = Plus / Minus

                                                                       
Query: 129 caaaggagctggaggctctgaaggagttgaacaaggcgatgcagcaagagctgaacgagc 188
           ||||||||||||   | |||||||||  ||||| ||||||  || | |||||||| ||||
Sbjct: 537 caaaggagctggcctcactgaaggagaagaacagggcgatcgaggaggagctgaaggagc 478

                                                                       
Query: 189 tccacgagcggtattcggagataagcctcaagttcgccgaggtggaaggtgagaggcagc 248
           | ||||| ||||| |||||||| ||||| | |||||| ||||||||||| ||| ||||||
Sbjct: 477 tgcacgaacggtactcggagatcagcctgaggttcgcggaggtggaaggcgagcggcagc 418

                                             
Query: 249 agctggtgatgacggtgcggacgctgaagaactc 282
           |||| |||||||| || ||| |||||||||||||
Sbjct: 417 agctcgtgatgaccgttcggtcgctgaagaactc 384
to top
>ref|NM_197238.1| Oryza sativa (japonica cultivar-group) putative myosin-related
            protein (OSJNBa0062C05.4), mRNA
          Length = 3392

 Score =  105 bits (53), Expect = 2e-19
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                        
Query: 174  aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
            ||||||| || || || |||| |||||| |||||||||||||| || ||||| || || |
Sbjct: 2909 aagagctcaaagaactgcacgggcggtactcggagataagcctgaaattcgcggaagtcg 2968

                                                                        
Query: 234  aaggtgagaggcagcagctggtgatgacggtgcggacgctgaagaactcgctgagatgat 293
            |||| |||||||||||||||||||||||||||||  | ||||||||||| ||||| ||||
Sbjct: 2969 aaggcgagaggcagcagctggtgatgacggtgcgcgccctgaagaactccctgaggtgat 3028

             
Query: 294  c 294
            |
Sbjct: 3029 c 3029



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 376  ggagggttttgtataggcgagcagctgga 404
            ||||||||||||||||||  |||||||||
Sbjct: 3083 ggagggttttgtataggcaggcagctgga 3111
to top
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score =  105 bits (53), Expect = 2e-19
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                         
Query: 174   aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
             ||||||| || || || |||| |||||| |||||||||||||| || ||||| || || |
Sbjct: 59616 aagagctcaaagaactgcacgggcggtactcggagataagcctgaaattcgcggaagtcg 59675

                                                                         
Query: 234   aaggtgagaggcagcagctggtgatgacggtgcggacgctgaagaactcgctgagatgat 293
             |||| |||||||||||||||||||||||||||||  | ||||||||||| ||||| ||||
Sbjct: 59676 aaggcgagaggcagcagctggtgatgacggtgcgcgccctgaagaactccctgaggtgat 59735

              
Query: 294   c 294
             |
Sbjct: 59736 c 59736



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                         
Query: 174   aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
             |||||||||| || || |||| || ||| || ||||||||||| || ||||| || || |
Sbjct: 68024 aagagctgaaagaactgcacgggccgtactcagagataagcctgaaattcgcggaagtcg 68083

                                            
Query: 234   aaggtgagaggcagcagctggtgatgacggt 264
             |||| ||||||||||||||||||||||||||
Sbjct: 68084 aaggcgagaggcagcagctggtgatgacggt 68114



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 376   ggagggttttgtataggcgagcagctgga 404
             ||||||||||||||||||  |||||||||
Sbjct: 59790 ggagggttttgtataggcaggcagctgga 59818
to top
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
              sequence
          Length = 130058

 Score =  105 bits (53), Expect = 2e-19
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                          
Query: 174    aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
              ||||||| || || || |||| |||||| |||||||||||||| || ||||| || || |
Sbjct: 125473 aagagctcaaagaactgcacgggcggtactcggagataagcctgaaattcgcggaagtcg 125532

                                                                          
Query: 234    aaggtgagaggcagcagctggtgatgacggtgcggacgctgaagaactcgctgagatgat 293
              |||| |||||||||||||||||||||||||||||  | ||||||||||| ||||| ||||
Sbjct: 125533 aaggcgagaggcagcagctggtgatgacggtgcgcgccctgaagaactccctgaggtgat 125592

               
Query: 294    c 294
              |
Sbjct: 125593 c 125593



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 376    ggagggttttgtataggcgagcagctgga 404
              ||||||||||||||||||  |||||||||
Sbjct: 125647 ggagggttttgtataggcaggcagctgga 125675
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  105 bits (53), Expect = 2e-19
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                            
Query: 174      aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
                ||||||| || || || |||| |||||| |||||||||||||| || ||||| || || |
Sbjct: 18764195 aagagctcaaagaactgcacgggcggtactcggagataagcctgaaattcgcggaagtcg 18764254

                                                                            
Query: 234      aaggtgagaggcagcagctggtgatgacggtgcggacgctgaagaactcgctgagatgat 293
                |||| |||||||||||||||||||||||||||||  | ||||||||||| ||||| ||||
Sbjct: 18764255 aaggcgagaggcagcagctggtgatgacggtgcgcgccctgaagaactccctgaggtgat 18764314

                 
Query: 294      c 294
                |
Sbjct: 18764315 c 18764315



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                            
Query: 174      aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
                |||||||||| || || |||| || ||| || ||||||||||| || ||||| || || |
Sbjct: 18772603 aagagctgaaagaactgcacgggccgtactcagagataagcctgaaattcgcggaagtcg 18772662

                                               
Query: 234      aaggtgagaggcagcagctggtgatgacggt 264
                |||| ||||||||||||||||||||||||||
Sbjct: 18772663 aaggcgagaggcagcagctggtgatgacggt 18772693



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 376      ggagggttttgtataggcgagcagctgga 404
                ||||||||||||||||||  |||||||||
Sbjct: 18764369 ggagggttttgtataggcaggcagctgga 18764397
to top
>dbj|AK064441.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-E06, full
           insert sequence
          Length = 1189

 Score =  105 bits (53), Expect = 2e-19
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                       
Query: 174 aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
           ||||||| || || || |||| |||||| |||||||||||||| || ||||| || || |
Sbjct: 732 aagagctcaaagaactgcacgggcggtactcggagataagcctgaaattcgcggaagtcg 791

                                                                       
Query: 234 aaggtgagaggcagcagctggtgatgacggtgcggacgctgaagaactcgctgagatgat 293
           |||| |||||||||||||||||||||||||||||  | ||||||||||| ||||| ||||
Sbjct: 792 aaggcgagaggcagcagctggtgatgacggtgcgcgccctgaagaactccctgaggtgat 851

            
Query: 294 c 294
           |
Sbjct: 852 c 852



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 376 ggagggttttgtataggcgagcagctgga 404
           ||||||||||||||||||  |||||||||
Sbjct: 906 ggagggttttgtataggcaggcagctgga 934
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  105 bits (53), Expect = 2e-19
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                            
Query: 174      aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
                ||||||| || || || |||| |||||| |||||||||||||| || ||||| || || |
Sbjct: 18775049 aagagctcaaagaactgcacgggcggtactcggagataagcctgaaattcgcggaagtcg 18775108

                                                                            
Query: 234      aaggtgagaggcagcagctggtgatgacggtgcggacgctgaagaactcgctgagatgat 293
                |||| |||||||||||||||||||||||||||||  | ||||||||||| ||||| ||||
Sbjct: 18775109 aaggcgagaggcagcagctggtgatgacggtgcgcgccctgaagaactccctgaggtgat 18775168

                 
Query: 294      c 294
                |
Sbjct: 18775169 c 18775169



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                            
Query: 174      aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
                |||||||||| || || |||| || ||| || ||||||||||| || ||||| || || |
Sbjct: 18783457 aagagctgaaagaactgcacgggccgtactcagagataagcctgaaattcgcggaagtcg 18783516

                                               
Query: 234      aaggtgagaggcagcagctggtgatgacggt 264
                |||| ||||||||||||||||||||||||||
Sbjct: 18783517 aaggcgagaggcagcagctggtgatgacggt 18783547



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 376      ggagggttttgtataggcgagcagctgga 404
                ||||||||||||||||||  |||||||||
Sbjct: 18775223 ggagggttttgtataggcaggcagctgga 18775251
to top
>gb|AY224548.1| Oryza sativa (japonica cultivar-group) isolate 24092 putative myosin
            mRNA, complete cds
          Length = 2949

 Score =  101 bits (51), Expect = 3e-18
 Identities = 99/115 (86%)
 Strand = Plus / Plus

                                                                        
Query: 174  aagagctgaacgagctccacgagcggtattcggagataagcctcaagttcgccgaggtgg 233
            ||||||| || || || |||| |||||| |||||||||||||| || ||||| || || |
Sbjct: 2831 aagagctcaaagaactgcacgggcggtactcggagataagcctgaaattcgcggaagtcg 2890

                                                                   
Query: 234  aaggtgagaggcagcagctggtgatgacggtgcggacgctgaagaactcgctgag 288
            |||| |||||||||||||||||||||||||||||  | ||||||||||| |||||
Sbjct: 2891 aaggcgagaggcagcagctggtgatgacggtgcgcgccctgaagaactccctgag 2945
to top
>gb|AF240003.1|AF240003 Mus musculus adenine nucleotide translocase 2 (ANT2) gene, complete
             cds; nuclear gene for mitochondrial product
          Length = 27256

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 352   atgatacccccttccctcccca 373
             ||||||||||||||||||||||
Sbjct: 17062 atgatacccccttccctcccca 17083
to top
>emb|AL450399.16| Mouse DNA sequence from clone RP23-286I5 on chromosome X, complete
             sequence
          Length = 207922

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 352   atgatacccccttccctcccca 373
             ||||||||||||||||||||||
Sbjct: 12261 atgatacccccttccctcccca 12282
to top
>gb|AC019068.8| Homo sapiens BAC clone RP11-201F21 from 2, complete sequence
          Length = 131359

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 227  gaggtggaaggtgagaggcagcagc 251
            |||||||||||||| ||||||||||
Sbjct: 2676 gaggtggaaggtgaaaggcagcagc 2652
to top
>gb|AC024267.18| Homo sapiens chromosome 17, clone RP11-20B24, complete sequence
          Length = 175020

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   tgatacccccttccctcccca 373
             |||||||||||||||||||||
Sbjct: 75620 tgatacccccttccctcccca 75600
to top
>gb|U31545.1|CRU31545 Chlamydomonas reinhardtii gamma-tubulin gene, complete cds
          Length = 4912

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 303  ccgcctgctcagtgctcaccc 323
            |||||||||||||||||||||
Sbjct: 2579 ccgcctgctcagtgctcaccc 2559
to top
>gb|AF013109.1|AF013109 Chlamydomonas reinhardtii gamma tubulin (TBG1) gene, complete cds
          Length = 4131

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 303  ccgcctgctcagtgctcaccc 323
            |||||||||||||||||||||
Sbjct: 2176 ccgcctgctcagtgctcaccc 2156
to top
>ref|NM_102056.2| Arabidopsis thaliana unknown protein AT1G22060 mRNA, complete cds
          Length = 6310

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 210  taagcctcaagttcgccgaggtggaaggtgagaggcagcagctggtgatgac 261
            ||||||||||||| || ||||| ||||| ||||| ||  ||||| |||||||
Sbjct: 5873 taagcctcaagtttgcagaggttgaaggagagagacaaaagctgatgatgac 5924
to top
>ref|NM_102055.1| Arabidopsis thaliana unknown protein AT1G22050 mRNA, complete cds
          Length = 1395

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 210  taagcctcaagttcgccgaggtggaaggtgagaggcagcagctggtgatgac 261
            ||||||||||||| || ||||| ||||| ||||| ||  ||||| |||||||
Sbjct: 1244 taagcctcaagtttgcagaggttgaaggagagagacaaaagctgatgatgac 1193
to top
>ref|NM_203511.1| Danio rerio flj13639 (flj13639), mRNA
          Length = 1693

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 agaggcagcagctggtgatgacgg 263
           ||||||||||| ||||||||||||
Sbjct: 641 agaggcagcaggtggtgatgacgg 664
to top
>gb|AC010846.13| Drosophila melanogaster clone BACR13G13, complete sequence
          Length = 192540

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 400    ctggacggtgatggaaacaa 419
              ||||||||||||||||||||
Sbjct: 189039 ctggacggtgatggaaacaa 189058
to top
>ref|XM_420050.1| PREDICTED: Gallus gallus similar to polycystic kidney and hepatic
            disease 1 (LOC422044), mRNA
          Length = 16068

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 130  aaaggagctggaggctctgaagga 153
            |||||||||||||| |||||||||
Sbjct: 8562 aaaggagctggagggtctgaagga 8585
to top
>gb|AC126593.5| Rattus norvegicus 13 BAC CH230-103N15 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 169168

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gcgatgcagcaagagctgaa 183
             ||||||||||||||||||||
Sbjct: 44184 gcgatgcagcaagagctgaa 44165
to top
>ref|NM_198082.2| Homo sapiens coiled-coil domain containing 57 (CCDC57), mRNA
          Length = 2997

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 gagctggaggctctgaagga 153
           ||||||||||||||||||||
Sbjct: 674 gagctggaggctctgaagga 693
to top
>ref|XM_855041.1| PREDICTED: Canis familiaris similar to subcommissural organ
           spondin, transcript variant 2 (LOC482788), mRNA
          Length = 15524

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 434 cttgcagaggccaaccctgg 453
           ||||||||||||||||||||
Sbjct: 295 cttgcagaggccaaccctgg 314
to top
>ref|XM_844806.1| PREDICTED: Canis familiaris similar to subcommissural organ
           spondin, transcript variant 1 (LOC482788), mRNA
          Length = 15482

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 434 cttgcagaggccaaccctgg 453
           ||||||||||||||||||||
Sbjct: 295 cttgcagaggccaaccctgg 314
to top
>gb|BC110997.1| Homo sapiens coiled-coil domain containing 57, mRNA (cDNA clone
           MGC:102869 IMAGE:5725904), complete cds
          Length = 3140

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 gagctggaggctctgaagga 153
           ||||||||||||||||||||
Sbjct: 674 gagctggaggctctgaagga 693
to top
>gb|BC040264.1| Homo sapiens coiled-coil domain containing 57, mRNA (cDNA clone
            MGC:34727 IMAGE:5165045), complete cds
          Length = 2966

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 134  gagctggaggctctgaagga 153
            ||||||||||||||||||||
Sbjct: 992  gagctggaggctctgaagga 1011
to top
>gb|AC122252.4| Mus musculus BAC clone RP23-170E7 from chromosome 17, complete sequence
          Length = 219695

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 321    cccacacaccatgtagcttcagga 344
              ||||| ||||||||||||||||||
Sbjct: 187163 cccacccaccatgtagcttcagga 187186
to top
>gb|AC002303.1|HUAC002303 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-670B5  ~complete
             genomic sequence, complete sequence
          Length = 131530

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   accctggtagcagggtcatg 466
             ||||||||||||||||||||
Sbjct: 67147 accctggtagcagggtcatg 67128
to top
>gb|AY316533.1| Danio rerio short chain dehydrogenase/reductase mRNA, complete cds
          Length = 1693

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 agaggcagcagctggtgatgacgg 263
           ||||||||||| ||||||||||||
Sbjct: 641 agaggcagcaggtggtgatgacgg 664
to top
>ref|XM_505416.1| Yarrowia lipolytica CLIB122, YALI0F14509g predicted mRNA
          Length = 3876

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 232 ggaaggtgagaggcagcagc 251
           ||||||||||||||||||||
Sbjct: 965 ggaaggtgagaggcagcagc 946
to top
>gb|AC132872.17| Homo sapiens chromosome 17, clone RP13-516M14, complete sequence
          Length = 171569

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    gagctggaggctctgaagga 153
              ||||||||||||||||||||
Sbjct: 151956 gagctggaggctctgaagga 151975
to top
>gb|BC114254.1| Danio rerio flj13639, mRNA (cDNA clone MGC:136710 IMAGE:8006240),
           complete cds
          Length = 1732

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 agaggcagcagctggtgatgacgg 263
           ||||||||||| ||||||||||||
Sbjct: 642 agaggcagcaggtggtgatgacgg 665
to top
>ref|NM_132901.2| Drosophila melanogaster CG4420-RA (CG4420), mRNA
          Length = 2336

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 400  ctggacggtgatggaaacaa 419
            ||||||||||||||||||||
Sbjct: 2143 ctggacggtgatggaaacaa 2162
to top
>gb|AC010920.11|AC010920 Drosophila melanogaster, chromosome X, region 14C-14D, BAC clone
             BACR47D09, complete sequence
          Length = 166935

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   ctggacggtgatggaaacaa 419
             ||||||||||||||||||||
Sbjct: 93085 ctggacggtgatggaaacaa 93104
to top
>gb|BT006019.1| Drosophila melanogaster GM04721 full insert cDNA
          Length = 2049

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 400  ctggacggtgatggaaacaa 419
            ||||||||||||||||||||
Sbjct: 1988 ctggacggtgatggaaacaa 2007
to top
>gb|AC069252.4|AC069252 Genomic sequence for Arabidopsis thaliana BAC F2E2 from chromosome I,
             complete sequence
          Length = 91825

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 210   taagcctcaagttcgccgaggtggaaggtgagaggcagcagctggtgatgac 261
             ||||||||||||| || ||||| ||||| ||||| ||  ||||| |||||||
Sbjct: 40872 taagcctcaagtttgcagaggttgaaggagagagacaaaagctgatgatgac 40821
to top
>emb|AJ327272.1|HSA327272 Homo sapiens genomic sequence surrounding NotI site, clone NL1-GO3R
          Length = 732

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 ccttccctccccaaaggagg 380
           ||||||||||||||||||||
Sbjct: 576 ccttccctccccaaaggagg 557
to top
>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete
              sequence
          Length = 304712

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 400    ctggacggtgatggaaacaa 419
              ||||||||||||||||||||
Sbjct: 112367 ctggacggtgatggaaacaa 112386
to top
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome
          Length = 191028

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 560   atgtgtcagttgttgtacct 579
             ||||||||||||||||||||
Sbjct: 67001 atgtgtcagttgttgtacct 66982
to top
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     ggaaggtgagaggcagcagc 251
               ||||||||||||||||||||
Sbjct: 1938470 ggaaggtgagaggcagcagc 1938489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,389,913
Number of Sequences: 3902068
Number of extensions: 4389913
Number of successful extensions: 93569
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93417
Number of HSP's gapped (non-prelim): 152
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top