Clone Information

BLAST Search Result

Clone Name	bags9k23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_550352.1\| Oryza sativa (japonica cultivar-group), mRNA	531	e-148
2	dbj\|AK073970.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	523	e-145
3	gb\|BT009129.1\| Triticum aestivum clone wl1n.pk0027.f4:fis, full ...	438	e-119
4	gb\|AY739295.1\| Zea mays protein disulfide isomerase (PDIL1-5) mR...	438	e-119
5	gb\|BT016852.1\| Zea mays clone Contig685 mRNA sequence	432	e-118
6	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	141	3e-30
7	dbj\|AB026295.2\| Oryza sativa (japonica cultivar-group) genomic D...	141	3e-30
8	gb\|AF541963.1\| Glycine max cv Williams 82 BAC clone Gm_ISb001_09...	44	0.54
9	dbj\|AP003120.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	44	0.54
10	emb\|AL591128.7\| Human DNA sequence from clone RP13-389O4 on chro...	42	2.1
11	gb\|DQ354452.1\| Oryctolagus cuniculus breast and ovarian cancer s...	42	2.1
12	gb\|AC018475.32\| Homo sapiens 12 BAC RP11-490G8 (Roswell Park Can...	42	2.1
13	emb\|AL163195.5\|CNS01RIH Human chromosome 14 DNA sequence BAC R-1...	42	2.1
14	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	40	8.4
15	gb\|AE004252.1\| Vibrio cholerae O1 biovar eltor str. N16961 chrom...	40	8.4
16	emb\|AL357512.15\| Human DNA sequence from clone RP11-541J2 on chr...	40	8.4
17	gb\|AC079271.4\| Homo sapiens chromosome 10 clone RP11-455I1, comp...	40	8.4
18	emb\|AL353774.11\| Human DNA sequence from clone RP11-267O11 on ch...	40	8.4
19	emb\|AL035401.23\|HS209A6 Human DNA sequence from clone RP1-209A6 ...	40	8.4
20	emb\|AL607008.2\|OSJN00119 Oryza sativa genomic DNA, chromosome 4,...	40	8.4
21	gb\|AC104441.2\| Homo sapiens chromosome 3 clone RP11-901H12, comp...	40	8.4
22	gb\|AC148188.3\| Saimiri boliviensis boliviensis clone CH254-64N20...	40	8.4
23	gb\|AC093811.3\| Homo sapiens BAC clone RP11-355H11 from 4, comple...	40	8.4
24	gb\|AC106811.2\| Homo sapiens chromosome 5 clone RP11-551B15, comp...	40	8.4
25	gb\|AC021856.7\| Homo sapiens BAC clone RP11-553E5 from 4, complet...	40	8.4
26	gb\|AC148489.3\| Saimiri boliviensis boliviensis clone CH254-475P8...	40	8.4
27	gb\|AY188330.1\| Sorghum bicolor phytochelatin synthetase-like pro...	40	8.4
28	emb\|BX248094.10\| Zebrafish DNA sequence from clone CH211-202I23 ...	40	8.4
29	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
30	emb\|AL606452.2\|OSJN00007 Oryza sativa genomic DNA, chromosome 4,...	40	8.4
31	gb\|AC079193.10\| Homo sapiens chromosome 8, clone RP11-468H14, co...	40	8.4
32	gb\|AC091050.3\| Homo sapiens chromosome 8, clone RP11-242F4, comp...	40	8.4
33	gb\|CP000033.1\| Lactobacillus acidophilus NCFM, complete genome	40	8.4
34	ref\|XM_316357.2\| Anopheles gambiae str. PEST ENSANGP00000004215 ...	40	8.4
35	dbj\|AP001835.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	8.4
36	dbj\|AP000755.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	8.4
37	dbj\|AP006207.1\| Homo sapiens genomic DNA, chromosome 8, clone:RP...	40	8.4
38	gb\|AC172892.1\| Mus musculus BAC clone RP23-269B2 from chromosome...	40	8.4
39	emb\|AL732585.8\| Mouse DNA sequence from clone RP23-226M2 on chro...	40	8.4
40	dbj\|AB020859.1\| Homo sapiens genomic DNA of 8p21.3-p22 anti-onco...	40	8.4

>ref|XM_550352.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2039

 Score =  531 bits (268), Expect = e-148
 Identities = 531/618 (85%), Gaps = 1/618 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    ttcccctccgtgctcctcttcgtcaacggcaccgancacccctncaccggcctccacacc 61
            |||||| |||| ||||||||||||||||||||||| ||||  | ||| ||||||||||||
Sbjct: 535  ttccccaccgtcctcctcttcgtcaacggcaccgagcaccaattcactggcctccacacc 594

                                                                        
Query: 62   aaggnacgcgatagttacttgggttagaaagaagaccggcacgccagtcattaggcttga 121
            |||| ||||||||||||||||||| ||||||||||| ||  | ||||  | |||| || |
Sbjct: 595  aagg-acgcgatagttacttgggtaagaaagaagactggtgcaccagctagtaggattca 653

                                                                        
Query: 122  gtcgagggattcagctgaggaatttctcaagaagggccagacatttgctcttggcgtatt 181
            ||| | |||||| |||||||||||||| || ||||  || || |||||| ||||  | ||
Sbjct: 654  gtcaaaggattccgctgaggaatttctgaaaaaggatcaaacttttgctgttggtctttt 713

                                                                        
Query: 182  caaggattacgagggagccgaccacgaagaatttgtgaaggcagcgactgctgaaaatga 241
            |||  |||  |||||||| ||  | |||||||| ||||| ||||| ||  | ||||||||
Sbjct: 714  caaaaattttgagggagcagaatatgaagaattcgtgaaagcagcaacctcagaaaatga 773

                                                                        
Query: 242  ggttcaattcgtagaaacaaatgataggaatgtggccaagattctttttccagggattgc 301
             || ||||| || ||||| |||||||||||||||||||| ||||||||||| || |||||
Sbjct: 774  agtgcaatttgtcgaaaccaatgataggaatgtggccaaaattctttttcctggtattgc 833

                                                                        
Query: 302  atctgaagaacaattcctgggccttgtgaaaaatgaaccagagatgtttgaaaagtttga 361
            ||||||||| ||||||||||||||||||||||  || ||||| | |||||| |||||  |
Sbjct: 834  atctgaagagcaattcctgggccttgtgaaaagcgagccagaaaagtttgagaagttcaa 893

                                                                        
Query: 362  tggatcatttgaagaaaaggagataattcagtttgtggagcttaacaagttcccactaat 421
             ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 894  cggggcatttgaagaaaaggagataattcaatttgtggagcttaacaagttcccacttat 953

                                                                        
Query: 422  tactgtattcactgatttaaactcagctaaagtctattcaagcccaattaagctacaggt 481
            |||||||||||||||| | ||||| | |||||| |||   ||||| ||||||||||||||
Sbjct: 954  tactgtattcactgatctcaactctggtaaagtttatgggagccctattaagctacaggt 1013

                                                                        
Query: 482  cttcacctttgcagaggcttatgattttgaagatcttgaatctattgttcaagaggtggc 541
            ||||||||||||||||||||||||||| |||||||||||||||||  | |||||||| ||
Sbjct: 1014 cttcacctttgcagaggcttatgatttcgaagatcttgaatctatgatccaagaggttgc 1073

                                                                        
Query: 542  cagaggatttaagacaaagataatgtttatatatgtggacactgctgaagaaaaccttgc 601
            ||||||||| || |||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 1074 cagaggattcaaaacaaagataatgcttatatatgtggatactgctgaagaaaagcttgc 1133

                              
Query: 602  aaaaccattcctgactct 619
             |||||||||||||||||
Sbjct: 1134 taaaccattcctgactct 1151

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>dbj|AK073970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071P17, full
            insert sequence
          Length = 2039

 Score =  523 bits (264), Expect = e-145
 Identities = 530/618 (85%), Gaps = 1/618 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    ttcccctccgtgctcctcttcgtcaacggcaccgancacccctncaccggcctccacacc 61
            |||||| |||| ||||||||||||||||||||||| ||||  | ||| ||||||||||||
Sbjct: 535  ttccccaccgtcctcctcttcgtcaacggcaccgagcaccaattcactggcctccacacc 594

                                                                        
Query: 62   aaggnacgcgatagttacttgggttagaaagaagaccggcacgccagtcattaggcttga 121
            |||| ||||||||||||||||||| ||||||||||| ||  | ||||  | |||| || |
Sbjct: 595  aagg-acgcgatagttacttgggtaagaaagaagactggtgcaccagctagtaggattca 653

                                                                        
Query: 122  gtcgagggattcagctgaggaatttctcaagaagggccagacatttgctcttggcgtatt 181
            ||| | |||||| |||||||||||||| || ||||  || || |||||| ||||  | ||
Sbjct: 654  gtcaaaggattccgctgaggaatttctgaaaaaggatcaaacttttgctgttggtctttt 713

                                                                        
Query: 182  caaggattacgagggagccgaccacgaagaatttgtgaaggcagcgactgctgaaaatga 241
            |||  |||  |||||| | ||  | |||||||| ||||| ||||| ||  | ||||||||
Sbjct: 714  caaaaattttgagggaacagaatatgaagaattcgtgaaagcagcaacctcagaaaatga 773

                                                                        
Query: 242  ggttcaattcgtagaaacaaatgataggaatgtggccaagattctttttccagggattgc 301
             || ||||| || ||||| |||||||||||||||||||| ||||||||||| || |||||
Sbjct: 774  agtgcaatttgtcgaaaccaatgataggaatgtggccaaaattctttttcctggtattgc 833

                                                                        
Query: 302  atctgaagaacaattcctgggccttgtgaaaaatgaaccagagatgtttgaaaagtttga 361
            ||||||||| ||||||||||||||||||||||  || ||||| | |||||| |||||  |
Sbjct: 834  atctgaagagcaattcctgggccttgtgaaaagcgagccagaaaagtttgagaagttcaa 893

                                                                        
Query: 362  tggatcatttgaagaaaaggagataattcagtttgtggagcttaacaagttcccactaat 421
             ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 894  cggggcatttgaagaaaaggagataattcaatttgtggagcttaacaagttcccacttat 953

                                                                        
Query: 422  tactgtattcactgatttaaactcagctaaagtctattcaagcccaattaagctacaggt 481
            |||||||||||||||| | ||||| | |||||| |||   ||||| ||||||||||||||
Sbjct: 954  tactgtattcactgatctcaactctggtaaagtttatgggagccctattaagctacaggt 1013

                                                                        
Query: 482  cttcacctttgcagaggcttatgattttgaagatcttgaatctattgttcaagaggtggc 541
            ||||||||||||||||||||||||||| |||||||||||||||||  | |||||||| ||
Sbjct: 1014 cttcacctttgcagaggcttatgatttcgaagatcttgaatctatgatccaagaggttgc 1073

                                                                        
Query: 542  cagaggatttaagacaaagataatgtttatatatgtggacactgctgaagaaaaccttgc 601
            ||||||||| || |||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 1074 cagaggattcaaaacaaagataatgcttatatatgtggatactgctgaagaaaagcttgc 1133

                              
Query: 602  aaaaccattcctgactct 619
             |||||||||||||||||
Sbjct: 1134 taaaccattcctgactct 1151

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>gb|BT009129.1| Triticum aestivum clone wl1n.pk0027.f4:fis, full insert mRNA
           sequence
          Length = 2565

 Score =  438 bits (221), Expect = e-119
 Identities = 520/619 (84%), Gaps = 1/619 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcccctccgtgctcctcttcgtcaacggcaccgancacccctncaccggcctccacac 60
           ||||||| ||||||||||||||||||| |||||||| ||| ||| |   |||||||||||
Sbjct: 183 cttccccaccgtgctcctcttcgtcaatggcaccgagcacgcctaccatggcctccacac 242

                                                                       
Query: 61  caaggnacgcgatagttacttgggttagaaagaagaccggcacgccagtcattaggcttg 120
           ||||| |||| |||||||||||||| |||||||| || |||  |||| ||||||||||| 
Sbjct: 243 caagg-acgccatagttacttgggtaagaaagaaaactggcgagccaatcattaggcttc 301

                                                                       
Query: 121 agtcgagggattcagctgaggaatttctcaagaagggccagacatttgctcttggcgtat 180
           |||| | ||||||||||||||| || ||||| |||| |  ||| |||| | ||||  |||
Sbjct: 302 agtctaaggattcagctgaggagttcctcaaaaaggacatgacctttgttattggtctat 361

                                                                       
Query: 181 tcaaggattacgagggagccgaccacgaagaatttgtgaaggcagcgactgctgaaaatg 240
           ||||| |||  |||||||| ||||| |||||||||||||||||||| ||  | || || |
Sbjct: 362 tcaagaattttgagggagcagaccatgaagaatttgtgaaggcagcaaccacagacaacg 421

                                                                       
Query: 241 aggttcaattcgtagaaacaaatgataggaatgtggccaagattctttttccagggattg 300
           |||| || || |||||||| | |||||    ||| |||||  |||| |||||||| ||| 
Sbjct: 422 aggtacagtttgtagaaaccagtgatacacgtgttgccaaagttctatttccaggtatta 481

                                                                       
Query: 301 catctgaagaacaattcctgggccttgtgaaaaatgaaccagagatgtttgaaaagtttg 360
           | || || ||  ||||  ||||||| || ||||  || ||||||| |||||||||||| |
Sbjct: 482 cgtccgaggagaaatttgtgggcctcgttaaaagcgagccagagaagtttgaaaagttcg 541

                                                                       
Query: 361 atggatcatttgaagaaaaggagataattcagtttgtggagcttaacaagttcccactaa 420
           ||||   ||||||||||||||| ||  | | |||||||||||| |||||||| || ||||
Sbjct: 542 atgggaaatttgaagaaaaggaaattttgcggtttgtggagctcaacaagtttcctctaa 601

                                                                       
Query: 421 ttactgtattcactgatttaaactcagctaaagtctattcaagcccaattaagctacagg 480
           ||||||||||||||||  | || || | |||||| ||||||||||| |||||||||||||
Sbjct: 602 ttactgtattcactgagctcaattccggtaaagtatattcaagccctattaagctacagg 661

                                                                       
Query: 481 tcttcacctttgcagaggcttatgattttgaagatcttgaatctattgttcaagaggtgg 540
           ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||  | |
Sbjct: 662 tcttcacctttgcagaggcttatgattttgaagatctggaatctatggttgaagaaatag 721

                                                                       
Query: 541 ccagaggatttaagacaaagataatgtttatatatgtggacactgctgaagaaaaccttg 600
           |||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 722 ccagagcattcaagacaaagataatgtttatatatgttgacactgctgaagaaaaccttg 781

                              
Query: 601 caaaaccattcctgactct 619
           ||||||||||||| |||||
Sbjct: 782 caaaaccattcctcactct 800

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>gb|AY739295.1| Zea mays protein disulfide isomerase (PDIL1-5) mRNA, complete cds
          Length = 1983

 Score =  438 bits (221), Expect = e-119
 Identities = 520/619 (84%), Gaps = 1/619 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    cttcccctccgtgctcctcttcgtcaacggcaccgancacccctncaccggcctccacac 60
            ||||||| ||||||||||||||||||| |||||||| ||| ||| |   |||||||||||
Sbjct: 597  cttccccaccgtgctcctcttcgtcaatggcaccgagcacgcctaccatggcctccacac 656

                                                                        
Query: 61   caaggnacgcgatagttacttgggttagaaagaagaccggcacgccagtcattaggcttg 120
            ||||| |||| |||||||||||||| |||||||| || |||  |||| ||||||||||| 
Sbjct: 657  caagg-acgccatagttacttgggtaagaaagaaaactggcgagccaatcattaggcttc 715

                                                                        
Query: 121  agtcgagggattcagctgaggaatttctcaagaagggccagacatttgctcttggcgtat 180
            |||| | ||||||||||||||| || ||||| |||| |  ||| |||| | ||||  |||
Sbjct: 716  agtctaaggattcagctgaggagttcctcaaaaaggacatgacctttgttattggtctat 775

                                                                        
Query: 181  tcaaggattacgagggagccgaccacgaagaatttgtgaaggcagcgactgctgaaaatg 240
            ||||| |||  |||||||| ||||| |||||||||||||||||||| ||  | || || |
Sbjct: 776  tcaagaattttgagggagcagaccatgaagaatttgtgaaggcagcaaccacagacaacg 835

                                                                        
Query: 241  aggttcaattcgtagaaacaaatgataggaatgtggccaagattctttttccagggattg 300
            |||| || || |||||||| | |||||    ||| |||||  |||| |||||||| ||| 
Sbjct: 836  aggtacagtttgtagaaaccagtgatacacgtgttgccaaagttctatttccaggtatta 895

                                                                        
Query: 301  catctgaagaacaattcctgggccttgtgaaaaatgaaccagagatgtttgaaaagtttg 360
            | || || ||  ||||  ||||||| || ||||  || ||||||| |||||||||||| |
Sbjct: 896  cgtccgaggagaaatttgtgggcctcgttaaaagcgagccagagaagtttgaaaagttcg 955

                                                                        
Query: 361  atggatcatttgaagaaaaggagataattcagtttgtggagcttaacaagttcccactaa 420
            ||||   ||||||||||||||| ||  | | |||||||||||| |||||||| || ||||
Sbjct: 956  atgggaaatttgaagaaaaggaaattttgcggtttgtggagctcaacaagtttcctctaa 1015

                                                                        
Query: 421  ttactgtattcactgatttaaactcagctaaagtctattcaagcccaattaagctacagg 480
            ||||||||||||||||  | || || | |||||| ||||||||||| |||||||||||||
Sbjct: 1016 ttactgtattcactgagctcaattccggtaaagtatattcaagccctattaagctacagg 1075

                                                                        
Query: 481  tcttcacctttgcagaggcttatgattttgaagatcttgaatctattgttcaagaggtgg 540
            ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||  | |
Sbjct: 1076 tcttcacctttgcagaggcttatgattttgaagatctggaatctatggttgaagaaatag 1135

                                                                        
Query: 541  ccagaggatttaagacaaagataatgtttatatatgtggacactgctgaagaaaaccttg 600
            |||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1136 ccagagcattcaagacaaagataatgtttatatatgttgacactgctgaagaaaaccttg 1195

                               
Query: 601  caaaaccattcctgactct 619
            ||||||||||||| |||||
Sbjct: 1196 caaaaccattcctcactct 1214

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>gb|BT016852.1| Zea mays clone Contig685 mRNA sequence
          Length = 1812

 Score =  432 bits (218), Expect = e-118
 Identities = 505/600 (84%), Gaps = 1/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  ttcgtcaacggcaccgancacccctncaccggcctccacaccaaggnacgcgatagttac 79
           |||||||| |||||||| ||| ||| |   |||||||||||||||| |||| ||||||||
Sbjct: 213 ttcgtcaatggcaccgagcacgcctaccatggcctccacaccaagg-acgccatagttac 271

                                                                       
Query: 80  ttgggttagaaagaagaccggcacgccagtcattaggcttgagtcgagggattcagctga 139
           |||||| ||||||||||| |||  |||| ||||||||||| |||| | ||||||||||||
Sbjct: 272 ttgggtaagaaagaagactggcgtgccaatcattaggcttcagtctaaggattcagctga 331

                                                                       
Query: 140 ggaatttctcaagaagggccagacatttgctcttggcgtattcaaggattacgagggagc 199
           ||| || ||||| |||| |  ||| |||| | ||||  |||||||| |||  ||||||||
Sbjct: 332 ggagttcctcaaaaaggacatgacctttgttattggtctattcaagaattttgagggagc 391

                                                                       
Query: 200 cgaccacgaagaatttgtgaaggcagcgactgctgaaaatgaggttcaattcgtagaaac 259
            ||||| |||||||||||||||||||| ||  | || || ||||| || || ||||||||
Sbjct: 392 agaccatgaagaatttgtgaaggcagcaaccacagacaacgaggtacagtttgtagaaac 451

                                                                       
Query: 260 aaatgataggaatgtggccaagattctttttccagggattgcatctgaagaacaattcct 319
            | |||||  | ||| |||||  |||| |||||||| ||||| || || ||  ||||  |
Sbjct: 452 cagtgatacaagtgttgccaaagttctatttccaggtattgcgtccgaggagaaatttgt 511

                                                                       
Query: 320 gggccttgtgaaaaatgaaccagagatgtttgaaaagtttgatggatcatttgaagaaaa 379
           |||||| || ||||  || ||||||| |||||||||||| |||||   ||||||||||||
Sbjct: 512 gggcctcgttaaaagcgagccagagaagtttgaaaagttcgatgggaaatttgaagaaaa 571

                                                                       
Query: 380 ggagataattcagtttgtggagcttaacaagttcccactaattactgtattcactgattt 439
           ||| ||  | | |||||||||||| |||||||| || ||||||||||||||||||||  |
Sbjct: 572 ggaaattttgcggtttgtggagctcaacaagtttcctctaattactgtattcactgagct 631

                                                                       
Query: 440 aaactcagctaaagtctattcaagcccaattaagctacaggtcttcacctttgcagaggc 499
            || || | |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 632 caattccggtaaagtatattcaagccctattaagctacaggtcttcacctttgcagaggc 691

                                                                       
Query: 500 ttatgattttgaagatcttgaatctattgttcaagaggtggccagaggatttaagacaaa 559
           |||||||||||||||||| |||||||| ||| ||||  | ||||||| ||| ||||||||
Sbjct: 692 ttatgattttgaagatctggaatctatggttgaagaaatagccagagcattcaagacaaa 751

                                                                       
Query: 560 gataatgtttatatatgtggacactgctgaagaaaaccttgcaaaaccattcctgactct 619
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 752 gataatgtttatatatgttgacactgctgaagaaaaccttgcaaaaccattcctcactct 811

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  141 bits (71), Expect = 3e-30
 Identities = 104/115 (90%)
 Strand = Plus / Plus

                                                                           
Query: 367     catttgaagaaaaggagataattcagtttgtggagcttaacaagttcccactaattactg 426
               ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 3199771 catttgaagaaaaggagataattcaatttgtggagcttaacaagttcccacttattactg 3199830

                                                                      
Query: 427     tattcactgatttaaactcagctaaagtctattcaagcccaattaagctacaggt 481
               ||||||||||| | ||||| | |||||| |||   ||||| ||||||||||||||
Sbjct: 3199831 tattcactgatctcaactctggtaaagtttatgggagccctattaagctacaggt 3199885



 Score =  135 bits (68), Expect = 2e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                           
Query: 207     gaagaatttgtgaaggcagcgactgctgaaaatgaggttcaattcgtagaaacaaatgat 266
               |||||||| ||||| ||||| ||  | |||||||| || ||||| || ||||| ||||||
Sbjct: 3199344 gaagaattcgtgaaagcagcaacctcagaaaatgaagtgcaatttgtcgaaaccaatgat 3199403

                                                                           
Query: 267     aggaatgtggccaagattctttttccagggattgcatctgaagaacaattcctgggcctt 326
               |||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 3199404 aggaatgtggccaaaattctttttcctggtattgcatctgaagagcaattcctgggcctt 3199463

                                               
Query: 327     gtgaaaaatgaaccagagatgtttgaaaagtt 358
               |||||||  || ||||| | |||||| |||||
Sbjct: 3199464 gtgaaaagcgagccagaaaagtttgagaagtt 3199495



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                           
Query: 478     aggtcttcacctttgcagaggcttatgattttgaagatcttgaatctattgttcaagagg 537
               ||||||||||||||||||||||||||||||| |||||||||||||||||  | |||||||
Sbjct: 3200054 aggtcttcacctttgcagaggcttatgatttcgaagatcttgaatctatgatccaagagg 3200113

                                      
Query: 538     tggccagaggatttaagacaaag 560
               | ||||||||||| || ||||||
Sbjct: 3200114 ttgccagaggattcaaaacaaag 3200136



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                           
Query: 559     agataatgtttatatatgtggacactgctgaagaaaaccttgcaaaaccattcctgactc 618
               |||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 3200234 agataatgcttatatatgtggatactgctgaagaaaagcttgctaaaccattcctgactc 3200293

                
Query: 619     t 619
               |
Sbjct: 3200294 t 3200294



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                           
Query: 2       ttcccctccgtgctcctcttcgtcaacggcaccgancacccctncaccggcctccacacc 61
               |||||| |||| ||||||||||||||||||||||| ||||  | ||| ||||||||||||
Sbjct: 3198901 ttccccaccgtcctcctcttcgtcaacggcaccgagcaccaattcactggcctccacacc 3198960

                  
Query: 62      aag 64
               |||
Sbjct: 3198961 aag 3198963



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                           
Query: 63      aggnacgcgatagttacttgggttagaaagaagaccggcacgccagtcattaggcttgag 122
               ||| ||||||||||||||||||| ||||||||||| ||  | ||||  | |||| || ||
Sbjct: 3199060 agggacgcgatagttacttgggtaagaaagaagactggtgcaccagctagtaggattcag 3199119

                                         
Query: 123     tcgagggattcagctgaggaatttct 148
               || | |||||| ||||||||||||||
Sbjct: 3199120 tcaaaggattccgctgaggaatttct 3199145

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>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0681F10
          Length = 170371

 Score =  141 bits (71), Expect = 3e-30
 Identities = 104/115 (90%)
 Strand = Plus / Plus

                                                                          
Query: 367    catttgaagaaaaggagataattcagtttgtggagcttaacaagttcccactaattactg 426
              ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 153956 catttgaagaaaaggagataattcaatttgtggagcttaacaagttcccacttattactg 154015

                                                                     
Query: 427    tattcactgatttaaactcagctaaagtctattcaagcccaattaagctacaggt 481
              ||||||||||| | ||||| | |||||| |||   ||||| ||||||||||||||
Sbjct: 154016 tattcactgatctcaactctggtaaagtttatgggagccctattaagctacaggt 154070



 Score =  135 bits (68), Expect = 2e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                          
Query: 207    gaagaatttgtgaaggcagcgactgctgaaaatgaggttcaattcgtagaaacaaatgat 266
              |||||||| ||||| ||||| ||  | |||||||| || ||||| || ||||| ||||||
Sbjct: 153529 gaagaattcgtgaaagcagcaacctcagaaaatgaagtgcaatttgtcgaaaccaatgat 153588

                                                                          
Query: 267    aggaatgtggccaagattctttttccagggattgcatctgaagaacaattcctgggcctt 326
              |||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 153589 aggaatgtggccaaaattctttttcctggtattgcatctgaagagcaattcctgggcctt 153648

                                              
Query: 327    gtgaaaaatgaaccagagatgtttgaaaagtt 358
              |||||||  || ||||| | |||||| |||||
Sbjct: 153649 gtgaaaagcgagccagaaaagtttgagaagtt 153680



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                          
Query: 478    aggtcttcacctttgcagaggcttatgattttgaagatcttgaatctattgttcaagagg 537
              ||||||||||||||||||||||||||||||| |||||||||||||||||  | |||||||
Sbjct: 154239 aggtcttcacctttgcagaggcttatgatttcgaagatcttgaatctatgatccaagagg 154298

                                     
Query: 538    tggccagaggatttaagacaaag 560
              | ||||||||||| || ||||||
Sbjct: 154299 ttgccagaggattcaaaacaaag 154321



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                          
Query: 559    agataatgtttatatatgtggacactgctgaagaaaaccttgcaaaaccattcctgactc 618
              |||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 154419 agataatgcttatatatgtggatactgctgaagaaaagcttgctaaaccattcctgactc 154478

               
Query: 619    t 619
              |
Sbjct: 154479 t 154479



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                          
Query: 2      ttcccctccgtgctcctcttcgtcaacggcaccgancacccctncaccggcctccacacc 61
              |||||| |||| ||||||||||||||||||||||| ||||  | ||| ||||||||||||
Sbjct: 153086 ttccccaccgtcctcctcttcgtcaacggcaccgagcaccaattcactggcctccacacc 153145

                 
Query: 62     aag 64
              |||
Sbjct: 153146 aag 153148



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                          
Query: 63     aggnacgcgatagttacttgggttagaaagaagaccggcacgccagtcattaggcttgag 122
              ||| ||||||||||||||||||| ||||||||||| ||  | ||||  | |||| || ||
Sbjct: 153245 agggacgcgatagttacttgggtaagaaagaagactggtgcaccagctagtaggattcag 153304

                                        
Query: 123    tcgagggattcagctgaggaatttct 148
              || | |||||| ||||||||||||||
Sbjct: 153305 tcaaaggattccgctgaggaatttct 153330

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>gb|AF541963.1| Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete
             sequence
          Length = 118773

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 347   gtttgaaaagtttgatggatca 368
             ||||||||||||||||||||||
Sbjct: 36157 gtttgaaaagtttgatggatca 36136

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>dbj|AP003120.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-657K20, complete
              sequence
          Length = 189499

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 393    tttgtggagcttaacaagttcc 414
              ||||||||||||||||||||||
Sbjct: 100267 tttgtggagcttaacaagttcc 100246

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>emb|AL591128.7| Human DNA sequence from clone RP13-389O4 on chromosome 10, complete
             sequence
          Length = 56981

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 583   ctgctgaagaaaaccttgcaa 603
             |||||||||||||||||||||
Sbjct: 25094 ctgctgaagaaaaccttgcaa 25074

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>gb|DQ354452.1| Oryctolagus cuniculus breast and ovarian cancer susceptibility 1
           (BRCA1) gene, partial cds
          Length = 2809

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 279 aagattctttttccagggatt 299
           |||||||||||||||||||||
Sbjct: 912 aagattctttttccagggatt 892

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>gb|AC018475.32| Homo sapiens 12 BAC RP11-490G8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152757

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 132    tcagctgaggaatttctcaag 152
              |||||||||||||||||||||
Sbjct: 100671 tcagctgaggaatttctcaag 100691

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>emb|AL163195.5|CNS01RIH Human chromosome 14 DNA sequence BAC R-14J7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162209

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 369   tttgaagaaaaggagataatt 389
             |||||||||||||||||||||
Sbjct: 79340 tttgaagaaaaggagataatt 79320

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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 502     atgattttgaagatcttgaa 521
               ||||||||||||||||||||
Sbjct: 3896505 atgattttgaagatcttgaa 3896524

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>gb|AE004252.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 160
            of 251 of the complete chromosome
          Length = 12631

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 456  tattcaagcccaattaagct 475
            ||||||||||||||||||||
Sbjct: 5388 tattcaagcccaattaagct 5369

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>emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chromosome 1 Contains a
              nicotinamide nucleotide adenylyltransferase 1 (NMNAT1)
              pseudogene and a high-mobility group box 3 (HMGB3)
              pseudogene, complete sequence
          Length = 184024

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 503    tgattttgaagatcttgaat 522
              ||||||||||||||||||||
Sbjct: 154998 tgattttgaagatcttgaat 154979

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>gb|AC079271.4| Homo sapiens chromosome 10 clone RP11-455I1, complete sequence
          Length = 200476

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 588    gaagaaaaccttgcaaaaccattc 611
              ||||||||||| ||||||||||||
Sbjct: 173670 gaagaaaacctagcaaaaccattc 173647

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>emb|AL353774.11| Human DNA sequence from clone RP11-267O11 on chromosome 9, complete
             sequence
          Length = 118588

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   ttgaagaaaaggagataatt 389
             ||||||||||||||||||||
Sbjct: 38984 ttgaagaaaaggagataatt 39003

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>emb|AL035401.23|HS209A6 Human DNA sequence from clone RP1-209A6 on chromosome 6p22.1-24.3
             Contains part of a novel gene, complete sequence
          Length = 105960

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   ctgaagaaaaccttgcaaaa 605
             ||||||||||||||||||||
Sbjct: 74226 ctgaagaaaaccttgcaaaa 74245

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>emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15,
             complete sequence
          Length = 137874

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   gtggccaagattctttttcc 292
             ||||||||||||||||||||
Sbjct: 98502 gtggccaagattctttttcc 98521

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>gb|AC104441.2| Homo sapiens chromosome 3 clone RP11-901H12, complete sequence
          Length = 177320

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 413   cccactaattactgtattcactga 436
             |||||||||||||| |||||||||
Sbjct: 64142 cccactaattactgcattcactga 64119

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>gb|AC148188.3| Saimiri boliviensis boliviensis clone CH254-64N20, complete sequence
          Length = 194092

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    gatgtttgaaaagtttgatg 363
              ||||||||||||||||||||
Sbjct: 179309 gatgtttgaaaagtttgatg 179328

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>gb|AC093811.3| Homo sapiens BAC clone RP11-355H11 from 4, complete sequence
          Length = 115335

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 370   ttgaagaaaaggagataattcagt 393
             |||||| |||||||||||||||||
Sbjct: 54839 ttgaaggaaaggagataattcagt 54816

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>gb|AC106811.2| Homo sapiens chromosome 5 clone RP11-551B15, complete sequence
          Length = 148362

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   taaagtctattcaagcccaa 468
             ||||||||||||||||||||
Sbjct: 92390 taaagtctattcaagcccaa 92409

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>gb|AC021856.7| Homo sapiens BAC clone RP11-553E5 from 4, complete sequence
          Length = 202507

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   atcttgaatctattgttcaa 533
             ||||||||||||||||||||
Sbjct: 20367 atcttgaatctattgttcaa 20386

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>gb|AC148489.3| Saimiri boliviensis boliviensis clone CH254-475P8, complete sequence
          Length = 183300

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  gatgtttgaaaagtttgatg 363
            ||||||||||||||||||||
Sbjct: 6658 gatgtttgaaaagtttgatg 6677

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>gb|AY188330.1| Sorghum bicolor phytochelatin synthetase-like protein 1,
            phytochelatin synthetase-like protein 2, and cytochrome
            b5 (Cyb5) genes, complete cds; and MADS box protein AGLG1
            (Aglg1) gene, partial cds
          Length = 23102

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 488  ctttgcagaggcttatgatt 507
            ||||||||||||||||||||
Sbjct: 3136 ctttgcagaggcttatgatt 3155

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>emb|BX248094.10| Zebrafish DNA sequence from clone CH211-202I23 in linkage group 15,
             complete sequence
          Length = 91040

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   cccactaattactgtattca 432
             ||||||||||||||||||||
Sbjct: 24696 cccactaattactgtattca 24715

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 555      acaaagataatgtttatatatgtg 578
                ||||| ||||||||||||||||||
Sbjct: 21847393 acaaatataatgtttatatatgtg 21847370



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     gtggccaagattctttttcc 292
               ||||||||||||||||||||
Sbjct: 6544254 gtggccaagattctttttcc 6544273

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>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01,
             complete sequence
          Length = 127713

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 555   acaaagataatgtttatatatgtg 578
             ||||| ||||||||||||||||||
Sbjct: 31994 acaaatataatgtttatatatgtg 31971

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>gb|AC079193.10| Homo sapiens chromosome 8, clone RP11-468H14, complete sequence
          Length = 169041

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 330    aaaaatgaaccagagatgtttgaaaagt 357
              ||||||||||||||||| |||| |||||
Sbjct: 161080 aaaaatgaaccagagatttttggaaagt 161107

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>gb|AC091050.3| Homo sapiens chromosome 8, clone RP11-242F4, complete sequence
          Length = 139980

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 330   aaaaatgaaccagagatgtttgaaaagt 357
             ||||||||||||||||| |||| |||||
Sbjct: 74960 aaaaatgaaccagagatttttggaaagt 74933

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>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 375    gaaaaggagataattcagtttgtg 398
              |||||| |||||||||||||||||
Sbjct: 595542 gaaaagcagataattcagtttgtg 595565

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>ref|XM_316357.2| Anopheles gambiae str. PEST ENSANGP00000004215 (ENSANGG00000003334),
            partial mRNA
          Length = 4458

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 581  cactgctgaagaaaaccttg 600
            ||||||||||||||||||||
Sbjct: 4376 cactgctgaagaaaaccttg 4357

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>dbj|AP001835.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-668M17, complete
             sequences
          Length = 204939

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   tgaggaatttctcaagaagg 156
             ||||||||||||||||||||
Sbjct: 68922 tgaggaatttctcaagaagg 68941

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>dbj|AP000755.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-716H6, complete
              sequences
          Length = 152306

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    tgaggaatttctcaagaagg 156
              ||||||||||||||||||||
Sbjct: 123001 tgaggaatttctcaagaagg 123020

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>dbj|AP006207.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-702B3, complete
              sequence
          Length = 170015

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 330    aaaaatgaaccagagatgtttgaaaagt 357
              ||||||||||||||||| |||| |||||
Sbjct: 130402 aaaaatgaaccagagatttttggaaagt 130429

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>gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome 16, complete sequence
          Length = 206740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 298    ttgcatctgaagaacaattcctgg 321
              ||||||||||||||| ||||||||
Sbjct: 198339 ttgcatctgaagaaccattcctgg 198316

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>emb|AL732585.8| Mouse DNA sequence from clone RP23-226M2 on chromosome 2, complete
             sequence
          Length = 151891

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   actgtattcactgatttaaa 442
             ||||||||||||||||||||
Sbjct: 43672 actgtattcactgatttaaa 43653

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>dbj|AB020859.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular
             colorectal and non-small cell lung cancer , segment 2/11
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 330   aaaaatgaaccagagatgtttgaaaagt 357
             ||||||||||||||||| |||| |||||
Sbjct: 91307 aaaaatgaaccagagatttttggaaagt 91334


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,337,151
Number of Sequences: 3902068
Number of extensions: 6337151
Number of successful extensions: 131406
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131146
Number of HSP's gapped (non-prelim): 244
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result