ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9k18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 369 bits (186), Expect = 5e-99 Identities = 339/389 (87%), Gaps = 1/389 (0%) Strand = Plus / Plus Query: 1 ttccctggctgcaagnactcttgtcgtatcaaggttgaagttccccacgttagtctcccg 60 |||||||| |||||| || ||||| ||||||||||| ||||||||| |||| ||| |||| Sbjct: 24490703 ttccctgggtgcaag-acacttgtagtatcaaggttcaagttcccctcgttggtcacccg 24490761 Query: 61 gncttacgaaatgaaattactcggcgaagaggaggctttgtctgtcttctgcagtgctgc 120 | ||||||||||| | || |||| || |||| |||| | ||||||||||| ||||||| Sbjct: 24490762 gacttacgaaatggagttgctcgatgaggaggcggctctttctgtcttctgtcgtgctgc 24490821 Query: 121 cttcgatcaggagtctgttcctcagactgctgacaagaaactggttaagcaggttgctgc 180 ||| ||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||| Sbjct: 24490822 ctttgatcaggagtccgttcctcggaccgctgacaagaaactggttcggcaggttgctgc 24490881 Query: 181 cgagtgcagagggcttcctctagctctcaaggttattggcgcatccttgcgtgatcagcc 240 ||||||||||| ||||||||||| || |||||||| || || || ||||| |||||||| Sbjct: 24490882 agagtgcagaggacttcctctagcactgaaggttatcggtgcgtcgttgcgggatcagcc 24490941 Query: 241 tcctatgatatggttgagcgcgaagaaccgcttgtcacgaggagagtctatatcggactc 300 ||||| |||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||| Sbjct: 24490942 tcctaagatatggttgagtgcgaagaaccggttgtcgcgaggagagactatatctgactc 24491001 Query: 301 acatgagaccaaactcctggaaagaatggcagcaagtgtcgagtgcttgtcgggaaaggt 360 |||||||||||||||||||| || ||||| ||||| ||||||||||||| || ||||| Sbjct: 24491002 tcatgagaccaaactcctggagaggatggccgcaagcatcgagtgcttgtcagggaaggt 24491061 Query: 361 tagggaatgtttccttgatctgggttgct 389 ||| ||||||||||||||||||||||||| Sbjct: 24491062 tagagaatgtttccttgatctgggttgct 24491090
>dbj|AK119516.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C04, full insert sequence Length = 1937 Score = 369 bits (186), Expect = 5e-99 Identities = 339/389 (87%), Gaps = 1/389 (0%) Strand = Plus / Plus Query: 1 ttccctggctgcaagnactcttgtcgtatcaaggttgaagttccccacgttagtctcccg 60 |||||||| |||||| || ||||| ||||||||||| ||||||||| |||| ||| |||| Sbjct: 270 ttccctgggtgcaag-acacttgtagtatcaaggttcaagttcccctcgttggtcacccg 328 Query: 61 gncttacgaaatgaaattactcggcgaagaggaggctttgtctgtcttctgcagtgctgc 120 | ||||||||||| | || |||| || |||| |||| | ||||||||||| ||||||| Sbjct: 329 gacttacgaaatggagttgctcgatgaggaggcggctctttctgtcttctgtcgtgctgc 388 Query: 121 cttcgatcaggagtctgttcctcagactgctgacaagaaactggttaagcaggttgctgc 180 ||| ||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||| Sbjct: 389 ctttgatcaggagtccgttcctcggaccgctgacaagaaactggttcggcaggttgctgc 448 Query: 181 cgagtgcagagggcttcctctagctctcaaggttattggcgcatccttgcgtgatcagcc 240 ||||||||||| ||||||||||| || |||||||| || || || ||||| |||||||| Sbjct: 449 agagtgcagaggacttcctctagcactgaaggttatcggtgcgtcgttgcgggatcagcc 508 Query: 241 tcctatgatatggttgagcgcgaagaaccgcttgtcacgaggagagtctatatcggactc 300 ||||| |||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||| Sbjct: 509 tcctaagatatggttgagtgcgaagaaccggttgtcgcgaggagagactatatctgactc 568 Query: 301 acatgagaccaaactcctggaaagaatggcagcaagtgtcgagtgcttgtcgggaaaggt 360 |||||||||||||||||||| || ||||| ||||| ||||||||||||| || ||||| Sbjct: 569 tcatgagaccaaactcctggagaggatggccgcaagcatcgagtgcttgtcagggaaggt 628 Query: 361 tagggaatgtttccttgatctgggttgct 389 ||| ||||||||||||||||||||||||| Sbjct: 629 tagagaatgtttccttgatctgggttgct 657
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 369 bits (186), Expect = 5e-99 Identities = 339/389 (87%), Gaps = 1/389 (0%) Strand = Plus / Plus Query: 1 ttccctggctgcaagnactcttgtcgtatcaaggttgaagttccccacgttagtctcccg 60 |||||||| |||||| || ||||| ||||||||||| ||||||||| |||| ||| |||| Sbjct: 24418909 ttccctgggtgcaag-acacttgtagtatcaaggttcaagttcccctcgttggtcacccg 24418967 Query: 61 gncttacgaaatgaaattactcggcgaagaggaggctttgtctgtcttctgcagtgctgc 120 | ||||||||||| | || |||| || |||| |||| | ||||||||||| ||||||| Sbjct: 24418968 gacttacgaaatggagttgctcgatgaggaggcggctctttctgtcttctgtcgtgctgc 24419027 Query: 121 cttcgatcaggagtctgttcctcagactgctgacaagaaactggttaagcaggttgctgc 180 ||| ||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||| Sbjct: 24419028 ctttgatcaggagtccgttcctcggaccgctgacaagaaactggttcggcaggttgctgc 24419087 Query: 181 cgagtgcagagggcttcctctagctctcaaggttattggcgcatccttgcgtgatcagcc 240 ||||||||||| ||||||||||| || |||||||| || || || ||||| |||||||| Sbjct: 24419088 agagtgcagaggacttcctctagcactgaaggttatcggtgcgtcgttgcgggatcagcc 24419147 Query: 241 tcctatgatatggttgagcgcgaagaaccgcttgtcacgaggagagtctatatcggactc 300 ||||| |||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||| Sbjct: 24419148 tcctaagatatggttgagtgcgaagaaccggttgtcgcgaggagagactatatctgactc 24419207 Query: 301 acatgagaccaaactcctggaaagaatggcagcaagtgtcgagtgcttgtcgggaaaggt 360 |||||||||||||||||||| || ||||| ||||| ||||||||||||| || ||||| Sbjct: 24419208 tcatgagaccaaactcctggagaggatggccgcaagcatcgagtgcttgtcagggaaggt 24419267 Query: 361 tagggaatgtttccttgatctgggttgct 389 ||| ||||||||||||||||||||||||| Sbjct: 24419268 tagagaatgtttccttgatctgggttgct 24419296
>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120071 Score = 369 bits (186), Expect = 5e-99 Identities = 339/389 (87%), Gaps = 1/389 (0%) Strand = Plus / Plus Query: 1 ttccctggctgcaagnactcttgtcgtatcaaggttgaagttccccacgttagtctcccg 60 |||||||| |||||| || ||||| ||||||||||| ||||||||| |||| ||| |||| Sbjct: 61734 ttccctgggtgcaag-acacttgtagtatcaaggttcaagttcccctcgttggtcacccg 61792 Query: 61 gncttacgaaatgaaattactcggcgaagaggaggctttgtctgtcttctgcagtgctgc 120 | ||||||||||| | || |||| || |||| |||| | ||||||||||| ||||||| Sbjct: 61793 gacttacgaaatggagttgctcgatgaggaggcggctctttctgtcttctgtcgtgctgc 61852 Query: 121 cttcgatcaggagtctgttcctcagactgctgacaagaaactggttaagcaggttgctgc 180 ||| ||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||| Sbjct: 61853 ctttgatcaggagtccgttcctcggaccgctgacaagaaactggttcggcaggttgctgc 61912 Query: 181 cgagtgcagagggcttcctctagctctcaaggttattggcgcatccttgcgtgatcagcc 240 ||||||||||| ||||||||||| || |||||||| || || || ||||| |||||||| Sbjct: 61913 agagtgcagaggacttcctctagcactgaaggttatcggtgcgtcgttgcgggatcagcc 61972 Query: 241 tcctatgatatggttgagcgcgaagaaccgcttgtcacgaggagagtctatatcggactc 300 ||||| |||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||| Sbjct: 61973 tcctaagatatggttgagtgcgaagaaccggttgtcgcgaggagagactatatctgactc 62032 Query: 301 acatgagaccaaactcctggaaagaatggcagcaagtgtcgagtgcttgtcgggaaaggt 360 |||||||||||||||||||| || ||||| ||||| ||||||||||||| || ||||| Sbjct: 62033 tcatgagaccaaactcctggagaggatggccgcaagcatcgagtgcttgtcagggaaggt 62092 Query: 361 tagggaatgtttccttgatctgggttgct 389 ||| ||||||||||||||||||||||||| Sbjct: 62093 tagagaatgtttccttgatctgggttgct 62121
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 285 bits (144), Expect = 5e-74 Identities = 258/296 (87%) Strand = Plus / Plus Query: 94 ggctttgtctgtcttctgcagtgctgccttcgatcaggagtctgttcctcagactgctga 153 ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 24000 ggctttgtctgtcttctgccgtgctgctttcgatcaggagtctgttccgcagactgctga 24059 Query: 154 caagaaactggttaagcaggttgctgccgagtgcagagggcttcctctagctctcaaggt 213 ||||||| |||| | |||||| |||| ||||||||||| |||||||| ||||| ||||| Sbjct: 24060 caagaaattggtcaggcaggtctctgcagagtgcagaggtcttcctctggctctgaaggt 24119 Query: 214 tattggcgcatccttgcgtgatcagcctcctatgatatggttgagcgcgaagaaccgctt 273 |||||| ||||| ||||| ||||| ||||||| ||||||| | ||||| |||||||| || Sbjct: 24120 tattggtgcatcgttgcgcgatcaacctcctaagatatggctcagcgccaagaaccggtt 24179 Query: 274 gtcacgaggagagtctatatcggactcacatgagaccaaactcctggaaagaatggcagc 333 ||| ||||||||| |||| || ||||| ||||||||||| || || || |||||||| || Sbjct: 24180 gtctcgaggagaggctatttctgactcccatgagaccaagcttctagagagaatggcggc 24239 Query: 334 aagtgtcgagtgcttgtcgggaaaggttagggaatgtttccttgatctgggttgct 389 ||| |||||||||||||| | |||||||| || ||||||||||||||||| |||| Sbjct: 24240 aagcgtcgagtgcttgtcagagaaggttagagattgtttccttgatctgggctgct 24295
>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence Length = 125927 Score = 285 bits (144), Expect = 5e-74 Identities = 258/296 (87%) Strand = Plus / Plus Query: 94 ggctttgtctgtcttctgcagtgctgccttcgatcaggagtctgttcctcagactgctga 153 ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 90645 ggctttgtctgtcttctgccgtgctgctttcgatcaggagtctgttccgcagactgctga 90704 Query: 154 caagaaactggttaagcaggttgctgccgagtgcagagggcttcctctagctctcaaggt 213 ||||||| |||| | |||||| |||| ||||||||||| |||||||| ||||| ||||| Sbjct: 90705 caagaaattggtcaggcaggtctctgcagagtgcagaggtcttcctctggctctgaaggt 90764 Query: 214 tattggcgcatccttgcgtgatcagcctcctatgatatggttgagcgcgaagaaccgctt 273 |||||| ||||| ||||| ||||| ||||||| ||||||| | ||||| |||||||| || Sbjct: 90765 tattggtgcatcgttgcgcgatcaacctcctaagatatggctcagcgccaagaaccggtt 90824 Query: 274 gtcacgaggagagtctatatcggactcacatgagaccaaactcctggaaagaatggcagc 333 ||| ||||||||| |||| || ||||| ||||||||||| || || || |||||||| || Sbjct: 90825 gtctcgaggagaggctatttctgactcccatgagaccaagcttctagagagaatggcggc 90884 Query: 334 aagtgtcgagtgcttgtcgggaaaggttagggaatgtttccttgatctgggttgct 389 ||| |||||||||||||| | |||||||| || ||||||||||||||||| |||| Sbjct: 90885 aagcgtcgagtgcttgtcagagaaggttagagattgtttccttgatctgggctgct 90940
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 222 bits (112), Expect = 7e-55 Identities = 190/216 (87%) Strand = Plus / Plus Query: 94 ggctttgtctgtcttctgcagtgctgccttcgatcaggagtctgttcctcagactgctga 153 ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 279233 ggctttgtctgtcttctgccgtgctgctttcgatcaggagtctgttccgcagactgctga 279292 Query: 154 caagaaactggttaagcaggttgctgccgagtgcagagggcttcctctagctctcaaggt 213 ||||||| |||| | |||||| |||| ||||||||||| |||||||| ||||| ||||| Sbjct: 279293 caagaaattggtcaggcaggtctctgcagagtgcagaggtcttcctctggctctgaaggt 279352 Query: 214 tattggcgcatccttgcgtgatcagcctcctatgatatggttgagcgcgaagaaccgctt 273 |||||| ||||| ||||| ||||| ||||||| ||||||| | ||||| |||||||| || Sbjct: 279353 tattggtgcatcgttgcgcgatcaacctcctaagatatggctcagcgccaagaaccggtt 279412 Query: 274 gtcacgaggagagtctatatcggactcacatgagac 309 ||| ||||||||| |||| || ||||| |||||||| Sbjct: 279413 gtctcgaggagaggctatttctgactcccatgagac 279448
>ref|NM_119484.3| Arabidopsis thaliana ADR1-L1; ATP binding AT4G33300 (ADR1-L1) transcript variant AT4G33300.1 mRNA, complete cds Length = 2940 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 161 ctggttaagcaggttgctgccgagtgcagagggcttcctctagctctcaa 210 |||||||||||||||||| || || | |||||||||| |||||||||| Sbjct: 1432 ctggttaagcaggttgctaatgaatgtaaagggcttcctttagctctcaa 1481
>ref|NM_001036704.1| Arabidopsis thaliana ADR1-L1; ATP binding AT4G33300 (ADR1-L1) transcript variant AT4G33300.2 mRNA, complete cds Length = 3370 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 161 ctggttaagcaggttgctgccgagtgcagagggcttcctctagctctcaa 210 |||||||||||||||||| || || | |||||||||| |||||||||| Sbjct: 1432 ctggttaagcaggttgctaatgaatgtaaagggcttcctttagctctcaa 1481
>emb|BX826916.1|CNS0A2H6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB75ZG03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2900 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 161 ctggttaagcaggttgctgccgagtgcagagggcttcctctagctctcaa 210 |||||||||||||||||| || || | |||||||||| |||||||||| Sbjct: 1432 ctggttaagcaggttgctaatgaatgtaaagggcttcctttagctctcaa 1481
>gb|AC110541.12| Mus musculus chromosome 7, clone RP23-105F19, complete sequence Length = 213499 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ctcctggaaagaatggcagc 333 |||||||||||||||||||| Sbjct: 174200 ctcctggaaagaatggcagc 174181
>emb|CR636280.2|CNS0EPXA Tetraodon nigroviridis full-length cDNA Length = 2194 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gaagaaccgcttgtcacgaggagagtct 289 ||||| ||||||||||||||||| |||| Sbjct: 790 gaagagccgcttgtcacgaggagggtct 763
>gb|AC015845.8| Homo sapiens chromosome 17, clone RP11-343K8, complete sequence Length = 191957 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 caggagtctgttcctcagac 147 |||||||||||||||||||| Sbjct: 150312 caggagtctgttcctcagac 150293
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctgtcttctgcagtgctgcc 121 |||||||||||||||||||| Sbjct: 11810480 ctgtcttctgcagtgctgcc 11810461
>gb|AC007536.10| Homo sapiens 12 BAC RP11-277E18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 71819 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 caggagtctgttcctcagactgct 151 ||||||||||| |||||||||||| Sbjct: 54162 caggagtctgtccctcagactgct 54185
>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_A03 Length = 168689 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctgtcttctgcagtgctgcc 121 |||||||||||||||||||| Sbjct: 88765 ctgtcttctgcagtgctgcc 88746
>emb|AL158802.1|CNS01RGO Human chromosome 14 DNA sequence BAC C-2008K18 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194523 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ggagtctgttcctcagactgctga 153 |||||||||||||||| ||||||| Sbjct: 183024 ggagtctgttcctcagtctgctga 183047
>emb|AL139296.4|CNS01DXF Human chromosome 14 DNA sequence BAC C-2504D12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209710 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ggagtctgttcctcagactgctga 153 |||||||||||||||| ||||||| Sbjct: 87103 ggagtctgttcctcagtctgctga 87126 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,778,480 Number of Sequences: 3902068 Number of extensions: 2778480 Number of successful extensions: 44856 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 44801 Number of HSP's gapped (non-prelim): 58 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
