ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9k08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransf... 890 0.0
2gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, p... 634 e-179
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
4emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb... 101 3e-18
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 101 3e-18
6emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 101 3e-18
7emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003... 68 4e-08
8gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like... 44 0.56
9emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chr... 44 0.56
10ref|XM_474640.1| Oryza sativa (japonica cultivar-group), predic... 42 2.2
11emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
12ref|NM_170325.1| Drosophila melanogaster CG31064-RA, transcript ... 42 2.2
13ref|NM_143288.2| Drosophila melanogaster CG31064-RE, transcript ... 42 2.2
14gb|AY051617.1| Drosophila melanogaster GH26613 full length cDNA 42 2.2
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16gb|AC009848.9|AC009848 Drosophila melanogaster, chromosome 3R, r... 42 2.2
17dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
18dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
19gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97... 42 2.2
20ref|NM_001031361.1| Gallus gallus gasdermin 1 (GSDM1), mRNA 40 8.8
21ref|XM_418085.1| PREDICTED: Gallus gallus similar to Myosin Id (... 40 8.8
22ref|XM_745088.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.8
23gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 8.8
24emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chrom... 40 8.8
25emb|AJ721093.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.8
26gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.8
27emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, c... 40 8.8
28emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in ... 40 8.8
29dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
30gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Canc... 40 8.8
31gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D... 40 8.8
32gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 o... 40 8.8
33dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
34emb|AJ328716.1|HSA328716 Homo sapiens genomic sequence surroundi... 40 8.8
35emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in... 40 8.8
36gb|AY560116.1| Feline calicivirus isolate UTCVM-H1, complete genome 40 8.8
37gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosom... 40 8.8 
>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
            complete cds
          Length = 5238

 Score =  890 bits (449), Expect = 0.0
 Identities = 468/472 (99%), Gaps = 2/472 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aattgtgagnagtagccatggnacaagnatttcagcacctttctttagtggtacgagtcc 60
            |||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 2673 aattgtgagaggtagccatgg-acaag-atttcagcacctttctttagtggtacgagtcc 2730

                                                                        
Query: 61   tgctgctgctagtgtcgccggagtggatgaggacgataggctgtgcttccaagcgcaaga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2731 tgctgctgctagtgtcgccggagtggatgaggacgataggctgtgcttccaagcgcaaga 2790

                                                                        
Query: 121  gctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctgggcctcct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2791 gctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctgggcctcct 2850

                                                                        
Query: 181  agacgcactcagtgcggctggtggcaaggcgctgacccccaacgagctcgtagagaacgt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2851 agacgcactcagtgcggctggtggcaaggcgctgacccccaacgagctcgtagagaacgt 2910

                                                                        
Query: 241  ggagacaagcagcaacaaggccgaggcggcggctgcggtggaccgtatcctcaggtacct 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2911 ggagacaagcagcaacaaggccgaggcggcggctgcggtggaccgtatcctcaggtacct 2970

                                                                        
Query: 301  ctcctgcttcaacgtggtgacctgctcttcggaggcagcaggccctgacggcacacttgt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2971 ctcctgcttcaacgtggtgacctgctcttcggaggcagcaggccctgacggcacacttgt 3030

                                                                        
Query: 361  gcggcgatacacgaccggccccttgtgccggtggctcaccaaagacagaggggacggcac 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3031 gcggcgatacacgaccggccccttgtgccggtggctcaccaaagacagaggggacggcac 3090

                                                                
Query: 421  cctgtccccctttgccgtctttgtggtcgaccccgaccacttattcccctgg 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3091 cctgtccccctttgccgtctttgtggtcgaccccgaccacttattcccctgg 3142



 Score =  343 bits (173), Expect = 4e-91
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                        
Query: 471  ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3335 ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 3394

                                                                        
Query: 531  agtggccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatg 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3395 agtggccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatg 3454

                                                                 
Query: 591  ccatggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaag 643
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3455 ccatggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaag 3507
to top
>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds
          Length = 983

 Score =  634 bits (320), Expect = e-179
 Identities = 320/320 (100%)
 Strand = Plus / Plus

                                                                       
Query: 324 gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 60

                                                                       
Query: 384 tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 120

                                                                       
Query: 444 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 180

                                                                       
Query: 504 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaacc 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaacc 240

                                                                       
Query: 564 agcggttgggaacactgttcgacaatgccatggctcagcactctgtgatcctggtcacca 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agcggttgggaacactgttcgacaatgccatggctcagcactctgtgatcctggtcacca 300

                               
Query: 624 agatgctcgagcgcttcaag 643
           ||||||||||||||||||||
Sbjct: 301 agatgctcgagcgcttcaag 320
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  101 bits (51), Expect = 3e-18
 Identities = 90/103 (87%)
 Strand = Plus / Plus

                                                                           
Query: 538     ctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccatggc 597
               ||||| ||||||||||||||||||||||||| ||||  | ||||||||| | ||||||||
Sbjct: 5364107 ctacttcgagtacatggggaagaaccagcggctgggcgcgctgttcgaccacgccatggc 5364166

                                                          
Query: 598     tcagcactctgtgatcctggtcaccaagatgctcgagcgcttc 640
                ||||| || ||||| ||||||| |||||||||||| ||||||
Sbjct: 5364167 gcagcattcagtgattctggtcagcaagatgctcgaacgcttc 5364209



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                           
Query: 113     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 172
               ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 5171173 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171232

                             
Query: 173     ggcctcctagacgc 186
               |||||||| |||||
Sbjct: 5171233 ggcctcctcgacgc 5171246



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                           
Query: 535     gccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccat 594
               ||||||| |||||||||| ||||||||| || || ||||    ||||||||| | |||||
Sbjct: 5171932 gccctaccacgagtacatagggaagaacaagaggctgggcgggctgttcgaccacgccat 5171991

                                                             
Query: 595     ggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttc 640
               ||| |||||||| | ||||| || |  |||||||||||| ||||||
Sbjct: 5171992 ggcgcagcactcggcgatccgggcccgcaagatgctcgaacgcttc 5172037



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                           
Query: 113     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 172
               |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 5363496 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 5363555

                                                            
Query: 173     ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 217
               || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 5363556 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 5363600
to top
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score =  101 bits (51), Expect = 3e-18
 Identities = 90/103 (87%)
 Strand = Plus / Plus

                                                                         
Query: 538   ctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccatggc 597
             ||||| ||||||||||||||||||||||||| ||||  | ||||||||| | ||||||||
Sbjct: 36174 ctacttcgagtacatggggaagaaccagcggctgggcgcgctgttcgaccacgccatggc 36233

                                                        
Query: 598   tcagcactctgtgatcctggtcaccaagatgctcgagcgcttc 640
              ||||| || ||||| ||||||| |||||||||||| ||||||
Sbjct: 36234 gcagcattcagtgattctggtcagcaagatgctcgaacgcttc 36276



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                         
Query: 113   gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 172
             |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 35563 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 35622

                                                          
Query: 173   ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 217
             || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 35623 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 35667
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  101 bits (51), Expect = 3e-18
 Identities = 90/103 (87%)
 Strand = Plus / Plus

                                                                           
Query: 538     ctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccatggc 597
               ||||| ||||||||||||||||||||||||| ||||  | ||||||||| | ||||||||
Sbjct: 5364096 ctacttcgagtacatggggaagaaccagcggctgggcgcgctgttcgaccacgccatggc 5364155

                                                          
Query: 598     tcagcactctgtgatcctggtcaccaagatgctcgagcgcttc 640
                ||||| || ||||| ||||||| |||||||||||| ||||||
Sbjct: 5364156 gcagcattcagtgattctggtcagcaagatgctcgaacgcttc 5364198



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                           
Query: 113     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 172
               ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 5171155 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171214

                             
Query: 173     ggcctcctagacgc 186
               |||||||| |||||
Sbjct: 5171215 ggcctcctcgacgc 5171228



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                           
Query: 535     gccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccat 594
               ||||||| |||||||||| ||||||||| || || ||||    ||||||||| | |||||
Sbjct: 5171914 gccctaccacgagtacatagggaagaacaagaggctgggcgggctgttcgaccacgccat 5171973

                                                             
Query: 595     ggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttc 640
               ||| |||||||| | ||||| || |  |||||||||||| ||||||
Sbjct: 5171974 ggcgcagcactcggcgatccgggcccgcaagatgctcgaacgcttc 5172019



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                           
Query: 113     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 172
               |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 5363485 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 5363544

                                                            
Query: 173     ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 217
               || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 5363545 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 5363589
to top
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 141841

 Score =  101 bits (51), Expect = 3e-18
 Identities = 90/103 (87%)
 Strand = Plus / Minus

                                                                          
Query: 538    ctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccatggc 597
              ||||| ||||||||||||||||||||||||| ||||  | ||||||||| | ||||||||
Sbjct: 101701 ctacttcgagtacatggggaagaaccagcggctgggcgcgctgttcgaccacgccatggc 101642

                                                         
Query: 598    tcagcactctgtgatcctggtcaccaagatgctcgagcgcttc 640
               ||||| || ||||| ||||||| |||||||||||| ||||||
Sbjct: 101641 gcagcattcagtgattctggtcagcaagatgctcgaacgcttc 101599



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                          
Query: 113    gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 172
              |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 102312 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 102253

                                                           
Query: 173    ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 217
              || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 102252 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 102208
to top
>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124959

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 113   gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 172
             ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 92426 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 92367

                           
Query: 173   ggcctcctagacgc 186
             |||||||| |||||
Sbjct: 92366 ggcctcctcgacgc 92353



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 87/106 (82%)
 Strand = Plus / Minus

                                                                         
Query: 535   gccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccat 594
             ||||||| |||||||||| ||||||||| || || ||||    ||||||||| | |||||
Sbjct: 91667 gccctaccacgagtacatagggaagaacaagaggctgggcgggctgttcgaccacgccat 91608

                                                           
Query: 595   ggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttc 640
             ||| |||||||| | ||||| || |  |||||||||||| ||||||
Sbjct: 91607 ggcgcagcactcggcgatccgggcccgcaagatgctcgaacgcttc 91562
to top
>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A),
            NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C
            (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete
            cds
          Length = 73617

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 260  gccgaggcggcggctgcggtgg 281
            ||||||||||||||||||||||
Sbjct: 2756 gccgaggcggcggctgcggtgg 2777
to top
>emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chromosome 9 Contains the
             STXBP1 gene for syntaxin binding protein 1
             (UNC18,hUNC18,MUNC18-1), two novel genes, a novel gene
             (LOC138428), the gene for a novel protien (LOC286207), the
             gene for anovel protein (FLJ32780), the TOR2A gene for
             torsin family 2, member A (FLJ14771), the 3' end of the
             SH2D3C gene for SH2 domain containing 3C (CHAT,NSP3) and
             five CpG islands, complete sequence
          Length = 163338

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 98    aggctgtgcttccaagcgcaagagct 123
             ||||||||||||||||| ||||||||
Sbjct: 60628 aggctgtgcttccaagcccaagagct 60653
to top
>ref|XM_474640.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 500 ggcgggccgtcggcgtttgagaggacgca 528
           ||||||||||||||||| |||||| ||||
Sbjct: 484 ggcgggccgtcggcgttcgagagggcgca 512
to top
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
              complete sequence
          Length = 144144

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 500    ggcgggccgtcggcgtttgagaggacgca 528
              ||||||||||||||||| |||||| ||||
Sbjct: 103594 ggcgggccgtcggcgttcgagagggcgca 103622
to top
>ref|NM_170325.1| Drosophila melanogaster CG31064-RA, transcript variant A (CG31064),
            mRNA
          Length = 3084

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 260  gccgaggcggcggctgcggtg 280
            |||||||||||||||||||||
Sbjct: 2087 gccgaggcggcggctgcggtg 2107
to top
>ref|NM_143288.2| Drosophila melanogaster CG31064-RE, transcript variant E (CG31064),
            mRNA
          Length = 3628

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 260  gccgaggcggcggctgcggtg 280
            |||||||||||||||||||||
Sbjct: 2634 gccgaggcggcggctgcggtg 2654
to top
>gb|AY051617.1| Drosophila melanogaster GH26613 full length cDNA
          Length = 2963

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 260  gccgaggcggcggctgcggtg 280
            |||||||||||||||||||||
Sbjct: 1956 gccgaggcggcggctgcggtg 1976
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 500     ggcgggccgtcggcgtttgagaggacgca 528
               ||||||||||||||||| |||||| ||||
Sbjct: 5127321 ggcgggccgtcggcgttcgagagggcgca 5127349
to top
>gb|AC009848.9|AC009848 Drosophila melanogaster, chromosome 3R, region 97E-98A, BAC clone
             BACR02B05, complete sequence
          Length = 189694

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 260   gccgaggcggcggctgcggtg 280
             |||||||||||||||||||||
Sbjct: 45889 gccgaggcggcggctgcggtg 45869
to top
>dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D16, full
           insert sequence
          Length = 1308

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 500 ggcgggccgtcggcgtttgagaggacgca 528
           ||||||||||||||||| |||||| ||||
Sbjct: 510 ggcgggccgtcggcgttcgagagggcgca 538
to top
>dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F20, full
           insert sequence
          Length = 1365

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 500 ggcgggccgtcggcgtttgagaggacgca 528
           ||||||||||||||||| |||||| ||||
Sbjct: 497 ggcgggccgtcggcgttcgagagggcgca 525
to top
>gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97 of 118 of the complete
              sequence
          Length = 222554

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 260    gccgaggcggcggctgcggtg 280
              |||||||||||||||||||||
Sbjct: 215220 gccgaggcggcggctgcggtg 215200
to top
>ref|NM_001031361.1| Gallus gallus gasdermin 1 (GSDM1), mRNA
          Length = 1588

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 397 caccaaagacagaggggacggcaccctg 424
           |||||||||||||| ||| |||||||||
Sbjct: 448 caccaaagacagagtggatggcaccctg 475
to top
>ref|XM_418085.1| PREDICTED: Gallus gallus similar to Myosin Id (LOC419963), mRNA
          Length = 5646

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  gagcagccatccagctgggc 175
            ||||||||||||||||||||
Sbjct: 1631 gagcagccatccagctgggc 1612
to top
>ref|XM_745088.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04330)
           partial mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 74  gtcgccggagtggatgagga 93
           ||||||||||||||||||||
Sbjct: 291 gtcgccggagtggatgagga 272
to top
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    gcaacaaggccgaggcggcg 271
              ||||||||||||||||||||
Sbjct: 498841 gcaacaaggccgaggcggcg 498860
to top
>emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chromosome 11 Contains the
             Myo1g gene for myosin 1G, a novel gene, a ribosomal
             protein L21 (Rpl21) pseudogene, the 5' end of a novel gene
             and two CpG islands, complete sequence
          Length = 93553

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 487   ggcggtgactgcgggcgggccgtcggcg 514
             ||||| |||||||||||||||| |||||
Sbjct: 51848 ggcggagactgcgggcgggccggcggcg 51875
to top
>emb|AJ721093.1| Gallus gallus mRNA for hypothetical protein, clone 34p8
          Length = 1588

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 397 caccaaagacagaggggacggcaccctg 424
           |||||||||||||| ||| |||||||||
Sbjct: 448 caccaaagacagagtggatggcaccctg 475
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 493     gactgcgggcgggccgtcgg 512
               ||||||||||||||||||||
Sbjct: 1530596 gactgcgggcgggccgtcgg 1530577
to top
>emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, complete sequence
          Length = 90800

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   catggtgctcagagcagcca 164
             ||||||||||||||||||||
Sbjct: 39007 catggtgctcagagcagcca 39026
to top
>emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in linkage group 17,
              complete sequence
          Length = 170138

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    catgtttgcctacaacatct 143
              ||||||||||||||||||||
Sbjct: 133275 catgtttgcctacaacatct 133294
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 263      gaggcggcggctgcggtgga 282
                ||||||||||||||||||||
Sbjct: 20905653 gaggcggcggctgcggtgga 20905634
to top
>gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 113064

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   ctccatggtgctcagagcag 161
             ||||||||||||||||||||
Sbjct: 16033 ctccatggtgctcagagcag 16052
to top
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
             sequence
          Length = 92652

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   catgtttgcctacaacatct 143
             ||||||||||||||||||||
Sbjct: 83981 catgtttgcctacaacatct 84000
to top
>gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 of the complete
            genome
          Length = 10189

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  gccgaggcggcggctgcggt 279
            ||||||||||||||||||||
Sbjct: 7650 gccgaggcggcggctgcggt 7669
to top
>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0090E14
          Length = 161119

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   gaggcggcggctgcggtgga 282
             ||||||||||||||||||||
Sbjct: 32577 gaggcggcggctgcggtgga 32558
to top
>emb|AJ328716.1|HSA328716 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NB5R
          Length = 680

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 ggccgaggcggcggctgcgg 278
           ||||||||||||||||||||
Sbjct: 51  ggccgaggcggcggctgcgg 32
to top
>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23,
              complete sequence
          Length = 178148

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    ctcagagcagccatccagct 171
              ||||||||||||||||||||
Sbjct: 173873 ctcagagcagccatccagct 173854
to top
>gb|AY560116.1| Feline calicivirus isolate UTCVM-H1, complete genome
          Length = 7685

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  ggtgctcagagcagccatcc 167
            ||||||||||||||||||||
Sbjct: 2093 ggtgctcagagcagccatcc 2074
to top
>gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosome 9, complete sequence
          Length = 170491

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   ctccatggtgctcagagcag 161
             ||||||||||||||||||||
Sbjct: 67690 ctccatggtgctcagagcag 67709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,100,514
Number of Sequences: 3902068
Number of extensions: 5100514
Number of successful extensions: 83311
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83015
Number of HSP's gapped (non-prelim): 296
length of query: 643
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 620
effective length of database: 17,143,297,704
effective search space: 10628844576480
effective search space used: 10628844576480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top