ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9k04 |
|---|---|
| Clone Library Name | barley_pub |
>RR16_NYMAL (Q6EW66) Chloroplast 30S ribosomal protein S16| Length = 86 Score = 35.0 bits (79), Expect = 0.18 Identities = 16/18 (88%), Positives = 17/18 (94%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCGR+QRAT R Sbjct: 1 MVKLRLKRCGRRQRATYR 18
>RR16_TOBAC (P06374) Chloroplast 30S ribosomal protein S16| Length = 85 Score = 34.3 bits (77), Expect = 0.30 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCGRKQRA R Sbjct: 1 MVKLRLKRCGRKQRAVYR 18
>RR16_SPIOL (P28807) Chloroplast 30S ribosomal protein S16| Length = 88 Score = 34.3 bits (77), Expect = 0.30 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCGRKQRA R Sbjct: 1 MVKLRLKRCGRKQRAVYR 18
>RR16_SOLTU (P32087) Chloroplast 30S ribosomal protein S16| Length = 88 Score = 34.3 bits (77), Expect = 0.30 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCGRKQRA R Sbjct: 1 MVKLRLKRCGRKQRAVYR 18
>RR16_SINAL (P10359) Chloroplast 30S ribosomal protein S16| Length = 88 Score = 34.3 bits (77), Expect = 0.30 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCGRKQRA R Sbjct: 1 MVKLRLKRCGRKQRAVYR 18
>RR16_SILLA (Q589B0) Chloroplast 30S ribosomal protein S16| Length = 88 Score = 34.3 bits (77), Expect = 0.30 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCGRKQRA R Sbjct: 1 MVKLRLKRCGRKQRAVYR 18
>RR16_PANGI (Q68S24) Chloroplast 30S ribosomal protein S16| Length = 78 Score = 34.3 bits (77), Expect = 0.30 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCGRKQRA R Sbjct: 1 MVKLRLKRCGRKQRAVYR 18
>RR16_ARATH (P56806) Chloroplast 30S ribosomal protein S16| Length = 79 Score = 34.3 bits (77), Expect = 0.30 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCGRKQRA R Sbjct: 1 MVKLRLKRCGRKQRAVYR 18
>RR16_CALFE (Q7YJY6) Chloroplast 30S ribosomal protein S16| Length = 88 Score = 33.9 bits (76), Expect = 0.39 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +1 Query: 151 MVKLRLKRCGRKQRA 195 MVKLRLKRCGRKQRA Sbjct: 1 MVKLRLKRCGRKQRA 15
>RR16_ORYSA (P12151) Chloroplast 30S ribosomal protein S16| Length = 85 Score = 33.1 bits (74), Expect = 0.67 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 M+KLRLKRCGRKQRA R Sbjct: 1 MLKLRLKRCGRKQRAVYR 18
>RR16_ORYNI (Q6ENJ5) Chloroplast 30S ribosomal protein S16| Length = 85 Score = 33.1 bits (74), Expect = 0.67 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 M+KLRLKRCGRKQRA R Sbjct: 1 MLKLRLKRCGRKQRAVYR 18
>RR16_OENHO (Q9MTQ0) Chloroplast 30S ribosomal protein S16| Length = 88 Score = 33.1 bits (74), Expect = 0.67 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCG+KQRA R Sbjct: 1 MVKLRLKRCGKKQRAVYR 18
>RR16_LOTJA (P58125) Chloroplast 30S ribosomal protein S16| Length = 80 Score = 33.1 bits (74), Expect = 0.67 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCG+KQRA R Sbjct: 1 MVKLRLKRCGKKQRAVYR 18
>RR16_HORVU (P25875) Chloroplast 30S ribosomal protein S16| Length = 85 Score = 32.7 bits (73), Expect = 0.87 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 MVKLRLKRCGRKQ+A R Sbjct: 1 MVKLRLKRCGRKQQAVYR 18
>RR16_SACOF (Q6ENY4) Chloroplast 30S ribosomal protein S16| Length = 85 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +1 Query: 151 MVKLRLKRCGRKQRA 195 MVKLRLKRCGRKQ+A Sbjct: 1 MVKLRLKRCGRKQQA 15
>RR16_SACHY (Q6L3B4) Chloroplast 30S ribosomal protein S16| Length = 85 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +1 Query: 151 MVKLRLKRCGRKQRA 195 MVKLRLKRCGRKQ+A Sbjct: 1 MVKLRLKRCGRKQQA 15
>RR16_MAIZE (P27723) Chloroplast 30S ribosomal protein S16| Length = 85 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +1 Query: 151 MVKLRLKRCGRKQRA 195 MVKLRLKRCGRKQ+A Sbjct: 1 MVKLRLKRCGRKQQA 15
>RR16_AMBTC (Q70Y15) Chloroplast 30S ribosomal protein S16| Length = 78 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/14 (100%), Positives = 14/14 (100%) Frame = +1 Query: 151 MVKLRLKRCGRKQR 192 MVKLRLKRCGRKQR Sbjct: 1 MVKLRLKRCGRKQR 14
>RR16_WHEAT (Q95H63) Chloroplast 30S ribosomal protein S16| Length = 85 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/18 (77%), Positives = 16/18 (88%) Frame = +1 Query: 151 MVKLRLKRCGRKQRAT*R 204 M+KLRLKRCGRKQ+A R Sbjct: 1 MLKLRLKRCGRKQQAVYR 18
>CAPP_PHAVU (Q9AU12) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 968 Score = 30.0 bits (66), Expect = 5.7 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = -3 Query: 606 RHYFGNSYFFLSKE*QHTLFSYFLR*SIYLFYRNLIRGID---SDILLLDFLRILTFRFI 436 RH N Y + +E T FL+ + L YR+L D +D LLDFLR ++ + Sbjct: 386 RHLLSNGYSDIPEENTFTSVEEFLQ-PLELCYRSLCACGDRAIADGSLLDFLRQVSTFGL 444 Query: 435 SILRID 418 SI+R+D Sbjct: 445 SIVRLD 450
>CAPP2_SOYBN (P51061) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 967 Score = 29.6 bits (65), Expect = 7.4 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = -3 Query: 606 RHYFGNSYFFLSKE*QHTLFSYFLR*SIYLFYRNLIRGID---SDILLLDFLRILTFRFI 436 RH N Y + +E T FL S+ L YR+L D +D LLDF+R ++ + Sbjct: 386 RHLLSNGYSDIPEEATFTNVEEFLE-SLELCYRSLCACGDRAIADGSLLDFMRQVSTFGL 444 Query: 435 SILRID 418 S++R+D Sbjct: 445 SLVRLD 450 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,254,379 Number of Sequences: 219361 Number of extensions: 1571527 Number of successful extensions: 3022 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2984 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3022 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
