ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9k01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full... 716 0.0
2ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA 264 3e-67
3gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a... 240 5e-60
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 208 2e-50
5dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 208 2e-50
6dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
7ref|NM_191846.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
11gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl... 46 0.15
12gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp... 46 0.15
13gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 46 0.15
14gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 46 0.15
15gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 42 2.4
16gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly... 42 2.4
17ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g ... 42 2.4
18gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete s... 42 2.4
19emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 2.4
20gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome... 42 2.4
21gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 42 2.4
22gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co... 40 9.3
23gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp... 40 9.3
24gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c... 40 9.3
25emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j... 40 9.3
26gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, com... 40 9.3
27gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, co... 40 9.3
28gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydroge... 40 9.3
29gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete s... 40 9.3
30emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, c... 40 9.3
31gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, com... 40 9.3
32gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, comple... 40 9.3
33gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g... 40 9.3
34gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 9.3
35emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surroundi... 40 9.3

>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  716 bits (361), Expect = 0.0
 Identities = 411/425 (96%), Gaps = 2/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 256 ccgacgccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatct 315
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 ccgacgccaacttacggcactacaccgacgccatcttacggcactacaccgacgccatct 601

                                                                       
Query: 316 tacggcactacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaag 375
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 600 tacggcactacaccgagcaccccaagtacaccttcccatgatgtccctgcaagtccaaag 541

                                                                       
Query: 376 aagcatggattcattggatcctgcgacttctggaagaatcacccagacgctataattgca 435
           |||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct: 540 aagcatgggttcattggatcctgcgactactggaagaatcacccagatgctatagttgca 481

                                                                       
Query: 436 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 421

                                                                       
Query: 496 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggc 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggc 361

                                                                       
Query: 556 gccctgatacgcgagggggcagctgcatacctcaactccattgtgaacaacaagttccca 615
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 360 gccctgatacgtgagggggcagctgcatacctcaactccattgtgaacaagaagttccca 301

                                                                       
Query: 616 tttacaacccagcaggtgaaggactgcattcgtcgtggccgcgacctctggatagtgctg 675
           ||||| |||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||
Sbjct: 300 tttaccacccagcaggtgaaggactgca-tcgtcgtggccgtgacctct-gatggtgctg 243

                
Query: 676 cttct 680
           |||||
Sbjct: 242 cttct 238



 Score =  242 bits (122), Expect = 1e-60
 Identities = 154/165 (93%), Gaps = 6/165 (3%)
 Strand = Plus / Minus

                                                                       
Query: 167 cccactatgggggctcaccaactccctcgcatgggtcaggaggaggctacaacccgacac 226
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 767 cccactatgggggctcaccaactcccacgcatgggtcaggaggaggctacaatccgacac 708

                                                                       
Query: 227 cgacaccaacttacggtactacaccaacgccgacgccatcttacggcactacaccgacgc 286
           |||||||||||||||| ||||||      |||||||||||||||||||||||||||||||
Sbjct: 707 cgacaccaacttacggcactaca------ccgacgccatcttacggcactacaccgacgc 654

                                                        
Query: 287 catcttatggcactacaccgacgccatcttacggcactacaccga 331
           || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 653 caacttacggcactacaccgacgccatcttacggcactacaccga 609



 Score =  180 bits (91), Expect = 4e-42
 Identities = 135/148 (91%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttcagttcagttgcttattctgttgtctactctgcacatactgagnagcaagnagggtgg 62
           |||||||||||||||||||||||   ||   ||||||| |||||| ||||||  ||||||
Sbjct: 909 ttcagttcagttgcttattctgt---cttgcctgcacacactgag-agcaagatgggtgg 854

                                                                       
Query: 63  caaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcaggag 122
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 853 caaggttcttctgatcagtgccgtcttggtggggcttgtttcactgagctcgtgcaggag 794

                                       
Query: 123 cctgggagagttgcatgagcagaagacc 150
           ||||||||||||||||||||||||||||
Sbjct: 793 cctgggagagttgcatgagcagaagacc 766



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>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  264 bits (133), Expect = 3e-67
 Identities = 337/404 (83%), Gaps = 7/404 (1%)
 Strand = Plus / Plus

                                                                       
Query: 262 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 321
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 205 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 264

                                                                       
Query: 322 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 381
           || ||||| |||||||| || |||||      ||| ||||||| |  ||| |  ||||||
Sbjct: 265 acgacaccaagcacccccagcacacc------tgatgtccctgaagttccgacaaagcat 318

                                                                       
Query: 382 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 441
           |  |||  |||||||||||| | ||||||||| || ||||| | ||| ||  ||||||||
Sbjct: 319 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 378

                                                                       
Query: 442 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 501
           |||||||||||| |||| ||||||||| | ||| |||| |||||| ||||   |||||||
Sbjct: 379 gggtcccttggcgacattggcaagacactcggtactgcttgcagtttgatcactggcaag 438

                                                                       
Query: 502 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggcgccctg 561
           ||||||| |||| | ||||||||||| ||||||||| |||||||||||| ||| || |||
Sbjct: 439 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactggtgctctg 498

                                                                       
Query: 562 atacgcgagggggcagctgcatacctcaactccattgtgaacaacaagttcccatttaca 621
            | |||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| 
Sbjct: 499 ctccgcgagggagcagctgcatacctcaactccattgtgaacaagaaattcccttttacc 558

                                                       
Query: 622 acccagcaggtgaaggactgcattcgtcgtggccgcgacctctg 665
           ||||| ||||| ||||| |||| |||||||||||  ||||||||
Sbjct: 559 acccaacaggttaaggattgca-tcgtcgtggccatgacctctg 601



 Score =  117 bits (59), Expect = 5e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 62  gcaaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 121
           |||||||||||||||| |||| |||| ||||||||||  |||| |||||||| |||||||
Sbjct: 8   gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 67

                                                      
Query: 122 gcctgggagagttgcatgagcagaagacctactcttcttctac 164
           ||||||||||||||  ||| |||||||||||||||||| ||||
Sbjct: 68  gcctgggagagttgtctgaacagaagacctactcttctactac 110



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 247 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 306
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 166 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 225

                                  
Query: 307 acgccatcttacggcactacacc 329
           || ||||||||||||||||||||
Sbjct: 226 acaccatcttacggcactacacc 248



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 223 acaccgacaccaacttacggtactacaccaac 254
           ||||| |||||| ||||||| |||||||||||
Sbjct: 220 acaccaacaccatcttacggcactacaccaac 251



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>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  240 bits (121), Expect = 5e-60
 Identities = 334/404 (82%), Gaps = 7/404 (1%)
 Strand = Plus / Plus

                                                                       
Query: 262 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 321
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 269 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 328

                                                                       
Query: 322 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 381
           || ||||| ||| |||| || |||||      ||| ||||||| |  ||| |  ||||||
Sbjct: 329 acgacaccaagctcccccagcacacc------tgatgtccctgaagttccgacaaagcat 382

                                                                       
Query: 382 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 441
           |  |||  |||||||||||| | ||||||||| || ||||| | ||| ||  ||||||||
Sbjct: 383 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 442

                                                                       
Query: 442 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 501
           |||||||||||| |||| |||| |||| | | | |||| |||||| ||||   |||||||
Sbjct: 443 gggtcccttggcgacattggcatgacactcgatactgcttgcagtttgatcactggcaag 502

                                                                       
Query: 502 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggcgccctg 561
           ||||||| |||| | ||||||||||| ||||||||| |||||||||||| ||| || |||
Sbjct: 503 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactggtgctctg 562

                                                                       
Query: 562 atacgcgagggggcagctgcatacctcaactccattgtgaacaacaagttcccatttaca 621
            | |||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| 
Sbjct: 563 ctccgcgagggagcagctgcatacctcaactccattgtgaacaagaaattcccttttacc 622

                                                       
Query: 622 acccagcaggtgaaggactgcattcgtcgtggccgcgacctctg 665
           ||||| ||||| ||||| |||| |||||||||||  ||||||||
Sbjct: 623 acccaacaggttaaggattgca-tcgtcgtggccatgacctctg 665



 Score =  121 bits (61), Expect = 3e-24
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                       
Query: 26  tgtctactctgcacatactgagnagcaagnagggtggcaaggttcttctgatgagtgctg 85
           ||||| ||||||| ||||||||   ||||  | || |||||||||||||||| |||| ||
Sbjct: 36  tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 95

                                                                       
Query: 86  tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 145
           || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 96  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 155

                              
Query: 146 agacctactcttcttctac 164
           |||||||||||||| ||||
Sbjct: 156 agacctactcttctactac 174



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 247 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 306
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 230 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 289

                                  
Query: 307 acgccatcttacggcactacacc 329
           || ||||||||||||||||||||
Sbjct: 290 acaccatcttacggcactacacc 312



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 223 acaccgacaccaacttacggtactacaccaac 254
           ||||| |||||| ||||||| |||||||||||
Sbjct: 284 acaccaacaccatcttacggcactacaccaac 315



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  208 bits (105), Expect = 2e-50
 Identities = 223/261 (85%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                           
Query: 405     ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 464
               ||||||||| || ||||| | ||| ||  |||||||||||||||||||| |||| |||||
Sbjct: 7323474 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 7323415

                                                                           
Query: 465     gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 524
               |||| | ||| |||| |||||| ||||   |||||||||||||| |||| | ||||||||
Sbjct: 7323414 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 7323355

                                                                           
Query: 525     actctcaaacactagaactgatggtattggcgccctgatacgcgagggggcagctgcata 584
               ||| ||||||||| |||||||||||| ||| || ||| | |||||||| |||||||||||
Sbjct: 7323354 actttcaaacactggaactgatggtactggtgctctgctccgcgagggagcagctgcata 7323295

                                                                           
Query: 585     cctcaactccattgtgaacaacaagttcccatttacaacccagcaggtgaaggactgcat 644
               ||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||| |||| 
Sbjct: 7323294 cctcaactccattgtgaacaagaaattcccttttaccacccaacaggttaaggattgca- 7323236

                                    
Query: 645     tcgtcgtggccgcgacctctg 665
               |||||||||||  ||||||||
Sbjct: 7323235 tcgtcgtggccatgacctctg 7323215



 Score =  121 bits (61), Expect = 3e-24
 Identities = 119/139 (85%)
 Strand = Plus / Minus

                                                                           
Query: 26      tgtctactctgcacatactgagnagcaagnagggtggcaaggttcttctgatgagtgctg 85
               ||||| ||||||| ||||||||   ||||  | || |||||||||||||||| |||| ||
Sbjct: 7324237 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 7324178

                                                                           
Query: 86      tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 145
               || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 7324177 tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 7324118

                                  
Query: 146     agacctactcttcttctac 164
               |||||||||||||| ||||
Sbjct: 7324117 agacctactcttctactac 7324099



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 247     acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 306
               |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 7323735 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 7323676

                                      
Query: 307     acgccatcttacggcactacacc 329
               || ||||||||||||||||||||
Sbjct: 7323675 acaccatcttacggcactacacc 7323653



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 262     ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 321
               |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 7323696 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 7323637

                                          
Query: 322     actacaccgagcaccccaagtacacct 348
               || ||||| |||||||| || ||||||
Sbjct: 7323636 acgacaccaagcacccccagcacacct 7323610



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 223     acaccgacaccaacttacggtactacaccaac 254
               ||||| |||||| ||||||| |||||||||||
Sbjct: 7323681 acaccaacaccatcttacggcactacaccaac 7323650



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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score =  208 bits (105), Expect = 2e-50
 Identities = 223/261 (85%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                         
Query: 405   ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 464
             ||||||||| || ||||| | ||| ||  |||||||||||||||||||| |||| |||||
Sbjct: 99282 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 99223

                                                                         
Query: 465   gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 524
             |||| | ||| |||| |||||| ||||   |||||||||||||| |||| | ||||||||
Sbjct: 99222 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 99163

                                                                         
Query: 525   actctcaaacactagaactgatggtattggcgccctgatacgcgagggggcagctgcata 584
             ||| ||||||||| |||||||||||| ||| || ||| | |||||||| |||||||||||
Sbjct: 99162 actttcaaacactggaactgatggtactggtgctctgctccgcgagggagcagctgcata 99103

                                                                         
Query: 585   cctcaactccattgtgaacaacaagttcccatttacaacccagcaggtgaaggactgcat 644
             ||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||| |||| 
Sbjct: 99102 cctcaactccattgtgaacaagaaattcccttttaccacccaacaggttaaggattgca- 99044

                                  
Query: 645   tcgtcgtggccgcgacctctg 665
             |||||||||||  ||||||||
Sbjct: 99043 tcgtcgtggccatgacctctg 99023



 Score =  121 bits (61), Expect = 3e-24
 Identities = 119/139 (85%)
 Strand = Plus / Minus

                                                                          
Query: 26     tgtctactctgcacatactgagnagcaagnagggtggcaaggttcttctgatgagtgctg 85
              ||||| ||||||| ||||||||   ||||  | || |||||||||||||||| |||| ||
Sbjct: 100045 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 99986

                                                                          
Query: 86     tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 145
              || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 99985  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 99926

                                 
Query: 146    agacctactcttcttctac 164
              |||||||||||||| ||||
Sbjct: 99925  agacctactcttctactac 99907



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 247   acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 306
             |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 99543 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 99484

                                    
Query: 307   acgccatcttacggcactacacc 329
             || ||||||||||||||||||||
Sbjct: 99483 acaccatcttacggcactacacc 99461



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 262   ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 321
             |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 99504 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 99445

                                        
Query: 322   actacaccgagcaccccaagtacacct 348
             || ||||| |||||||| || ||||||
Sbjct: 99444 acgacaccaagcacccccagcacacct 99418



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 223   acaccgacaccaacttacggtactacaccaac 254
             ||||| |||||| ||||||| |||||||||||
Sbjct: 99489 acaccaacaccatcttacggcactacaccaac 99458



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>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score =  165 bits (83), Expect = 2e-37
 Identities = 150/171 (87%), Gaps = 1/171 (0%)
 Strand = Plus / Plus

                                                                       
Query: 495 tggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattgg 554
           |||||||||||||| |||| | ||||||||||| ||||||||| |||||||||||| |||
Sbjct: 9   tggcaagaagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactgg 68

                                                                       
Query: 555 cgccctgatacgcgagggggcagctgcatacctcaactccattgtgaacaacaagttccc 614
            || ||| | |||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 69  tgctctgctccgcgagggagcagctgcatacctcaactccattgtgaacaagaaattccc 128

                                                              
Query: 615 atttacaacccagcaggtgaaggactgcattcgtcgtggccgcgacctctg 665
            ||||| ||||| ||||| ||||| |||| |||||||||||  ||||||||
Sbjct: 129 ttttaccacccaacaggttaaggattgca-tcgtcgtggccatgacctctg 178



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>ref|NM_191846.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1944

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 586  ctcaactccattgtgaacaacaagttcccatttacaacccagcaggtgaaggac 639
            ||||||||||| ||||||| || |||||| || || || |||||||||||||||
Sbjct: 1795 ctcaactccatggtgaacagcaggttccccttcaccacgcagcaggtgaaggac 1848



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 586      ctcaactccattgtgaacaacaagttcccatttacaacccagcaggtgaaggac 639
                ||||||||||| ||||||| || |||||| || || || |||||||||||||||
Sbjct: 30289314 ctcaactccatggtgaacagcaggttccccttcaccacgcagcaggtgaaggac 30289367



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>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0042A10
          Length = 146840

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 586   ctcaactccattgtgaacaacaagttcccatttacaacccagcaggtgaaggac 639
             ||||||||||| ||||||| || |||||| || || || |||||||||||||||
Sbjct: 77633 ctcaactccatggtgaacagcaggttccccttcaccacgcagcaggtgaaggac 77686



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>dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full
            insert sequence
          Length = 2368

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 586  ctcaactccattgtgaacaacaagttcccatttacaacccagcaggtgaaggac 639
            ||||||||||| ||||||| || |||||| || || || |||||||||||||||
Sbjct: 1884 ctcaactccatggtgaacagcaggttccccttcaccacgcagcaggtgaaggac 1937



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>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 369   tccaaagaagcatggattcattg 391
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046



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>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 369   tccaaagaagcatggattcattg 391
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046



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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 369   tccaaagaagcatggattcattg 391
             |||||||||||||||||||||||
Sbjct: 43691 tccaaagaagcatggattcattg 43669



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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 369   tccaaagaagcatggattcattg 391
             |||||||||||||||||||||||
Sbjct: 91385 tccaaagaagcatggattcattg 91407



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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 345    accttcccatgaagtccctgc 365
              |||||||||||||||||||||
Sbjct: 115173 accttcccatgaagtccctgc 115193



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>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 329 cgagcaccccaagtacacctt 349
           |||||||||||||||||||||
Sbjct: 675 cgagcaccccaagtacacctt 695



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>ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g predicted mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 601 aacaacaagttcccatttaca 621
           |||||||||||||||||||||
Sbjct: 380 aacaacaagttcccatttaca 360



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>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 520   gatgcactctcaaacactagaactg 544
             ||||||||||||||| |||||||||
Sbjct: 18448 gatgcactctcaaactctagaactg 18472



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 520   gatgcactctcaaacactagaactg 544
             ||||||||||||||| |||||||||
Sbjct: 17278 gatgcactctcaaactctagaactg 17254



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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 601   aacaacaagttcccatttaca 621
             |||||||||||||||||||||
Sbjct: 64663 aacaacaagttcccatttaca 64643



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>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 501    gaagctaggaaatatgcatga 521
              |||||||||||||||||||||
Sbjct: 108440 gaagctaggaaatatgcatga 108420



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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 520    gatgcactctcaaacactagaactg 544
              ||||||||||||||| |||||||||
Sbjct: 627720 gatgcactctcaaactctagaactg 627744



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 520    gatgcactctcaaacactagaactg 544
              ||||||||||||||| |||||||||
Sbjct: 626550 gatgcactctcaaactctagaactg 626526



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>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     ctgttgtctactctgcacat 41
              ||||||||||||||||||||
Sbjct: 177039 ctgttgtctactctgcacat 177020



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>gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, complete sequence
          Length = 200362

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ctgttgtctactctgcacat 41
             ||||||||||||||||||||
Sbjct: 81167 ctgttgtctactctgcacat 81148



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>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tgcttattctgttgtctact 33
             ||||||||||||||||||||
Sbjct: 86325 tgcttattctgttgtctact 86344



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>emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE
          Length = 122251

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 605   acaagttcccatttacaacc 624
             ||||||||||||||||||||
Sbjct: 48921 acaagttcccatttacaacc 48940



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>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence
          Length = 224673

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     gggtggcaaggttcttctgatgag 80
              |||||||||||||| |||||||||
Sbjct: 168931 gggtggcaaggttcatctgatgag 168954



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>gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, complete sequence
          Length = 43128

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ctcctgcaggagcctgggag 130
             ||||||||||||||||||||
Sbjct: 42852 ctcctgcaggagcctgggag 42833



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>gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydrogenase E (aadhE1)
            gene, partial cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 564  acgcgagggggcagctgcat 583
            ||||||||||||||||||||
Sbjct: 1738 acgcgagggggcagctgcat 1719



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>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   aacccgacaccgacaccaac 236
             ||||||||||||||||||||
Sbjct: 15886 aacccgacaccgacaccaac 15867



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>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    tggtgctgcatgcagtatga 490
              ||||||||||||||||||||
Sbjct: 114553 tggtgctgcatgcagtatga 114572



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>gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, complete sequence
          Length = 5054

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 111  ctcctgcaggagcctgggag 130
            ||||||||||||||||||||
Sbjct: 1337 ctcctgcaggagcctgggag 1318



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>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   accttcccatgaagtccctg 364
             ||||||||||||||||||||
Sbjct: 10846 accttcccatgaagtccctg 10827



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>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 371 caaagaagcatggattcattggat 394
           |||||||||| |||||||||||||
Sbjct: 701 caaagaagcagggattcattggat 678



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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 373     aagaagcatggattcattgg 392
               ||||||||||||||||||||
Sbjct: 2827466 aagaagcatggattcattgg 2827485



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>emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JG2R
          Length = 788

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 ctcctgcaggagcctgggag 130
           ||||||||||||||||||||
Sbjct: 467 ctcctgcaggagcctgggag 448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,878,001
Number of Sequences: 3902068
Number of extensions: 4878001
Number of successful extensions: 92091
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91933
Number of HSP's gapped (non-prelim): 141
length of query: 680
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 657
effective length of database: 17,143,297,704
effective search space: 11263146591528
effective search space used: 11263146591528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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