>YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor|
          Length = 250

 Score =  111 bits (277), Expect = 2e-24
 Identities = 60/169 (35%), Positives = 90/169 (53%)
 Frame = +3

Query: 45  FPFEMVDEEGMSVVILKRDYKDEKIEVIVSMPNMXXXXXXXXXXXXXXXXXXXXXXXXXX 224
           FPF + D+ G   V L RDY  E I+V+VSMP++                          
Sbjct: 93  FPFRIEDKPGNQNVTLTRDYNGEHIKVVVSMPSL------------VSDENDDDDDDDEG 140

Query: 225 XXXXSSLAMKVIVSKGSGPNLEFTCTAFREEITIDDMMIAEKTEPDAEKFPFEGPEFTEL 404
               SS+ + V V+K SG  LEF+C AF +EI ID + +    +   ++   EGP+F +L
Sbjct: 141 PSNESSIPLVVTVTKKSGLTLEFSCMAFPDEIAIDALSVKHPGDSLEDQLANEGPDFEDL 200

Query: 405 PPNVQKGLFKFLEVRGVTLTTTNFMHDYMITKQTKEYVRWMTKLKGLVQ 551
             N++K  +KFLE+RGV  +TTNF+H+YM  K  +EY  W+  +K  ++
Sbjct: 201 DENLKKTFYKFLEIRGVKASTTNFLHEYMTRKVNREYFLWLKNVKEFME 249

>Y2979_ARATH (O22288) Hypothetical protein At2g39790, mitochondrial precursor|
          Length = 240

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 44/179 (24%), Positives = 73/179 (40%)
 Frame = +3

Query: 12  PPTGRNLLQXDFPFEMVDEEGMSVVILKRDYKDEKIEVIVSMPNMXXXXXXXXXXXXXXX 191
           P     +    FP ++ D+ G   V L   Y DE+I V V MP +               
Sbjct: 80  PNLNEEMAPGSFPLKIRDKPGDQSVTLTAYYNDERIHVDVGMPYLGDDVIDVFGPNNDEL 139

Query: 192 XXXXXXXXXXXXXXXSSLAMKVIVSKGSGPNLEFTCTAFREEITIDDMMIAEKTEPDAEK 371
                           S  + V V K +G ++EFTC A+ + I + D+ + +      E 
Sbjct: 140 ----------------SFPLVVTVIKKNGVSIEFTCQAYADYIDLTDLTVHDYQYQMGET 183

Query: 372 FPFEGPEFTELPPNVQKGLFKFLEVRGVTLTTTNFMHDYMITKQTKEYVRWMTKLKGLV 548
              + P F  L  N++K   ++L  R +    T  +H YM++K  +EY+ W+  +   V
Sbjct: 184 ---DWPRFKNLDDNLKKAFHRYLATR-LDANITKLLHKYMVSKIKREYLLWLKNVNKFV 238

>MAM33_YEAST (P40513) Mitochondrial acidic protein MAM33, mitochondrial|
           precursor
          Length = 266

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +3

Query: 378 FEGPEFTELPPNVQKGLFKFLEVRGVTLTTTNFMHDYMITKQTKEYVRWMTKLK 539
           + GP F+ L   +Q+ L  +LE RGV     +F+  Y   K+  EY+ W+ K+K
Sbjct: 209 YHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMK 262

>PRIA_RHORU (P05445) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 811

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 398 RASSQRAEGPVQVPGGTRCDADNHQLHARLHDH 496
           RA+ QRAEG   +PGG R      ++ A L DH
Sbjct: 142 RAAGQRAEGQGPLPGGARLSPGRQRVLAVLDDH 174

>ZW10_RAT (Q4V8C2) Centromere/kinetochore protein zw10 homolog|
          Length = 776

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
 Frame = -1

Query: 551 LDQTLELGHPPDVLLGLLGDHVIVHEVGGC----------QRHTSYLQELE---QALLHV 411
           LD  LE+G  P+++L  +   VI  ++  C            ++S LQ+ E   Q+    
Sbjct: 310 LDADLEIGKVPEIVLAEMLGEVIWEDLSDCLIRNCLVYSIPTNSSKLQQYEEIIQSTEEF 369

Query: 410 GRKLGEFRALKGEFLCIRFCFLCYHHVVNGDLLTKGCAGELKVWARSLGDYHLHSKATV 234
            + L E R LKG+   +    L Y   +N     K C  ++ V AR L    +H+   +
Sbjct: 370 EKSLKEMRFLKGDTTDL----LKYARNINSHFANKKCQ-DVIVAARHLMTSEIHNTVKI 423

>TRPE2_HALMA (Q5V213) Anthranilate synthase component 1 2 (EC 4.1.3.27)|
           (Anthranilate synthase component I 2)
          Length = 536

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 590 RVTRPGPSVQPQLLDQTLELGHPPDVLLGLLGDHVIVHEVGG-CQRHTSYLQE--LEQAL 420
           R   P P +     D    +G  P+ L+ + GDHV+ + + G C R  S +++  L   +
Sbjct: 293 RAVNPSPYMYLLGYDDLTIVGASPETLVSVAGDHVVSNPIAGTCPRGNSPVEDRRLAGEM 352

Query: 419 LHVGRKLGEFRAL 381
           L  G++  E   L
Sbjct: 353 LADGKERAEHTML 365

>NPY2R_BOVIN (P79113) Neuropeptide Y receptor type 2 (NPY2-R) (NPY-Y2 receptor)|
          Length = 384

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
 Frame = -1

Query: 593 GRVTRPG---PSVQPQLLDQT--------LELGHPPDVLLGLLGDHVIVHEV 471
           G  T PG   P  +P+L+D T        L L +   +LLG++G+ +++H V
Sbjct: 27  GHTTLPGELAPDSEPELIDSTKLIEVQVVLILAYCSIILLGVIGNSLVIHVV 78

>PRTP_EBV (P25939) Probable processing and transport protein|
          Length = 789

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -1

Query: 530 GHPPDVLLGLLGDHVI----VHEVGGCQRHTSYLQELEQALLHVGRKLG 396
           GH  DV L L+ D  I    ++ V  C  HT  L+ LE+AL  +GR  G
Sbjct: 213 GHKVDVSLCLINDIEILMKRINSVFYCMSHTMGLESLERALDLLGRFRG 261

>COXX_RICPR (Q9ZDI2) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O|
           synthase)
          Length = 310

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -1

Query: 281 WARSL--GDYHLHSKATVFAALIFIVIILGSILTVSLIIFIKLRVPFHIGHADNDLNLLI 108
           WA +L   D + H K  +   +   +     IL  S+I+FI   +PF IG  +ND+ L+I
Sbjct: 194 WAIALFCNDDYKHCKIPMMPVVKGTLYTKKQILIYSIILFIVSLMPFFIG-MNNDIYLII 252

Query: 107 LVV 99
           + +
Sbjct: 253 VCI 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,956,821
Number of Sequences: 219361
Number of extensions: 1578863
Number of successful extensions: 4590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4589
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)