ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9j22 |
|---|---|
| Clone Library Name | barley_pub |
>NDUAC_ARATH (Q9M9M9) Probable NADH-ubiquinone oxidoreductase subunit B17.2 (EC| 1.6.5.3) (EC 1.6.99.3) (Complex I-B17.2) (CI-B17.2) Length = 159 Score = 247 bits (630), Expect = 2e-65 Identities = 108/155 (69%), Positives = 129/155 (83%) Frame = +2 Query: 17 VVRSVWQGIKEKGLANFLRYARDEGYLKCLGDGNLLQTKIHNIGATLVGVDSFGNKYYEK 196 V +S + I+EKGL F+R R+EG+++CL DGNLLQTKIHNIGATLVGVD FGNKYY+K Sbjct: 5 VAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQK 64 Query: 197 LHDTQYGRHRWVEYAEKGRYNASQVPAEWHGWLHHITDSTGDKLLEEKTKKFIMEHRQNY 376 L DTQYGRHRWVEYA K RYNASQVPAEWHGWLH ITD TGD+LL K K++ +EH++N+ Sbjct: 65 LGDTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKENF 124 Query: 377 TGQGDDLIYHSKGHALNPGQRDWTRYQPWEPKKEE 481 +G+GD IYHSKGH LNPGQ++WTRYQ W P K + Sbjct: 125 SGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ 159
>NDUAC_CAEEL (Q9N2W7) Probable NADH dehydrogenase [ubiquinone] 1 alpha| subcomplex subunit 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 17.0 kDa subunit) Length = 146 Score = 77.8 bits (190), Expect = 2e-14 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 2/108 (1%) Frame = +2 Query: 152 TLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKG--RYNASQVPAEWHGWLHHITDSTGDK 325 TLVG D+FGN+YYE + R+RWVE+ +K Y+A+QVP EWH WLHHITD Sbjct: 42 TLVGSDNFGNRYYEN-NAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDD-APS 99 Query: 326 LLEEKTKKFIMEHRQNYTGQGDDLIYHSKGHALNPGQRDWTRYQPWEP 469 + T+ +++EH++N + IY K + P T+ Q W+P Sbjct: 100 VKPPPTQDWVLEHKENTS------IYADKKYV--PYSTTRTKIQGWQP 139
>NDUAC_HUMAN (Q9UI09) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) (13 kDa differentiation-associated protein) Length = 145 Score = 64.7 bits (156), Expect = 2e-10 Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Frame = +2 Query: 41 IKEKGLANFLRYARDEGYLKCLGDGNLLQTKIHNIGATLVGVDSFGNKYYEKLHDTQYGR 220 + ++GL + GYL+ +T +G TLVG D +GNKYYE + +GR Sbjct: 6 VLKRGLQQITGHGGLRGYLRVF-----FRTNDAKVG-TLVGEDKYGNKYYED-NKQFFGR 58 Query: 221 HRWVEYAEKGR-------YNASQVPAEWHGWLHHITDSTGDKLLEEKTKKFIMEHRQNYT 379 HRWV Y + + S VP EWH WLH +TD K H+ N T Sbjct: 59 HRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVT 118 Query: 380 GQGDDLIYHS 409 G + + +S Sbjct: 119 GTPEQYVPYS 128
>NDUAC_BOVIN (O97725) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) Length = 145 Score = 63.2 bits (152), Expect = 4e-10 Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 8/131 (6%) Frame = +2 Query: 41 IKEKGLANFLRYARDEGYLKCLGDGNLLQTKIHNIGATLVGVDSFGNKYYEKLHDTQYGR 220 + ++GL + GYL+ L N ++ TLVG D +GNKYYE + +GR Sbjct: 6 VLKRGLQQVSGHGGLRGYLRVLFRANDVRV------GTLVGEDKYGNKYYED-NKQFFGR 58 Query: 221 HRWVEYAEKGR-------YNASQVPAEWHGWLHHITDSTGDKLLEEKTKKFI-MEHRQNY 376 HRWV Y + + S VP EWH WLH +TD + +KFI H+ N Sbjct: 59 HRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDP-PTVKPPTARKFIWTNHKFNL 117 Query: 377 TGQGDDLIYHS 409 +G + +S Sbjct: 118 SGTPQQYVPYS 128
>NDUAC_MOUSE (Q7TMF3) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) Length = 145 Score = 57.8 bits (138), Expect = 2e-08 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Frame = +2 Query: 152 TLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGR-------YNASQVPAEWHGWLHHITD 310 TLVG D +GNKYYE + +GRHRWV Y + + S VP EWH WLH +TD Sbjct: 37 TLVGEDKYGNKYYED-NKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTD 95
>Y725_RICPR (Q9ZCK4) Hypothetical protein RP725| Length = 100 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Frame = +2 Query: 152 TLVGVDSFGNKYYEKLHDTQY-GR-HRWVEYAEKGRYNASQVPAEWHGWLHHITD 310 T VG D F N+YYE ++ Y GR R V Y K ++++P W+ WLHH+ + Sbjct: 14 TKVGEDEFLNQYYESRNNIDYLGRSRRCVIY--KNINESTKIPPSWYSWLHHLVN 66
>MIMIT_HUMAN (Q8N183) Mimitin, mitochondrial precursor (Myc-induced| mitochondrial protein) (MMTN) (B17.2-like) (B17.2L) Length = 169 Score = 37.7 bits (86), Expect = 0.020 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 10/83 (12%) Frame = +2 Query: 158 VGVDSFGNKY-----YEKLHDTQYGRHRWVEYAEKGR--YNASQVPAEWHGWLHHI--TD 310 VG D FGNKY Y+ R VE A K Y A +P EW W+ T Sbjct: 23 VGTDQFGNKYYYIPQYKNWRGQTIREKRIVEAANKKEVDYEAGDIPTEWEAWIRRTRKTP 82 Query: 311 STGDKLLE-EKTKKFIMEHRQNY 376 T +++L+ EK ++ I Q++ Sbjct: 83 PTMEEILKNEKHREEIKIKSQDF 105
>MIMIT_MOUSE (Q59J78) Mimitin, mitochondrial precursor (Myc-induced| mitochondrial protein) (MMTN) Length = 168 Score = 33.9 bits (76), Expect = 0.29 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Frame = +2 Query: 158 VGVDSFGNKYY-----EKLHDTQYGRHRWVEYAEKGR--YNASQVPAEWHGWLHHI--TD 310 VG D GNKYY + R VE A + Y A +P EW W+ T Sbjct: 23 VGTDHLGNKYYYVAEYKNWRGQTIREKRIVEAANRKEVDYEAGDIPTEWEAWIRRTRKTP 82 Query: 311 STGDKLLE-EKTKKFIMEHRQNY 376 T +++L+ EK ++ I Q++ Sbjct: 83 PTMEEILKNEKYREEIKIKSQDF 105
>GLNA_TUBBO (Q86ZU6) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 358 Score = 31.6 bits (70), Expect = 1.4 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 17/79 (21%) Frame = +2 Query: 209 QYGRHRWV----------EYAEKGRYNASQVPAEWHGWLHHITDST-------GDKLLEE 337 + G H W+ E+ K ++ +P +W+G H ST G K +EE Sbjct: 212 EMGDHLWISRYLLHRVAEEFGVKISFHPKPIPGDWNGSGLHTNVSTQAMRDEGGMKAIEE 271 Query: 338 KTKKFIMEHRQNYTGQGDD 394 +K H ++ GDD Sbjct: 272 AIQKLSTRHAEHIAVYGDD 290
>KBX4_MESMA (Q9N661) Potassium channel toxin beta-KTx 4 precursor (Toxin BmTX| K-beta2) (BmTXKbeta2) (BmTX K beta2') Length = 91 Score = 30.4 bits (67), Expect = 3.2 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +2 Query: 38 GIKEKGLANFLRYARDEGYLKCLGDGNLLQTKIHNIGATLVGVDSF 175 G++EK ++YA EG L+ ++QT +H +G T G ++ Sbjct: 20 GLREKHFQKLVKYAVPEGTLR-----TIIQTAVHKLGKTQFGCPAY 60
>FBX42_PONPY (Q5RDA9) F-box only protein 42| Length = 717 Score = 30.4 bits (67), Expect = 3.2 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 6/26 (23%) Frame = +1 Query: 103 PWGWKPIANQNSQH-----WCNP-CR 162 PW W+P+ +N +H WC+P CR Sbjct: 321 PWAWQPLKVENEEHGAPELWCHPACR 346
>FBX42_HUMAN (Q6P3S6) F-box only protein 42| Length = 717 Score = 30.4 bits (67), Expect = 3.2 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 6/26 (23%) Frame = +1 Query: 103 PWGWKPIANQNSQH-----WCNP-CR 162 PW W+P+ +N +H WC+P CR Sbjct: 321 PWAWQPLKVENEEHGAPELWCHPACR 346
>XYNB_CALSA (P23552) Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan| xylohydrolase) (Xylan 1,4-beta-xylosidase) Length = 488 Score = 29.6 bits (65), Expect = 5.5 Identities = 33/133 (24%), Positives = 44/133 (33%), Gaps = 19/133 (14%) Frame = +2 Query: 140 NIGATLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGRYNASQVPAEWHGWLH------- 298 N G L ++ F K H T R W + +K R +HGWL+ Sbjct: 12 NYGKRLGKINKFWAKCVGSCHATTALREDWRKQLKKCRDELGFEYIRFHGWLNDDMSVCF 71 Query: 299 -----------HITDSTGDKLLEEKTKKFI-MEHRQNYTGQGDDLIYHSKGHALNPGQRD 442 DS D LLE K FI + G ++H KG+ P Sbjct: 72 RNDDGLLSFSFFNIDSIIDFLLEIGMKPFIELSFMPEALASGTKTVFHYKGNITPP---- 127 Query: 443 WTRYQPWEPKKEE 481 Y+ W EE Sbjct: 128 -KSYEEWGQLIEE 139
>FBX42_MOUSE (Q6PDJ6) F-box only protein 42| Length = 717 Score = 29.6 bits (65), Expect = 5.5 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 6/26 (23%) Frame = +1 Query: 103 PWGWKPIANQNSQH-----WCNP-CR 162 PW W+P+ +N H WC+P CR Sbjct: 321 PWAWQPLKVENEDHGAPELWCHPACR 346
>FUMB_METJA (Q58034) Putative fumarate hydratase beta subunit (EC 4.2.1.2)| (Fumarase) Length = 195 Score = 28.9 bits (63), Expect = 9.3 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +2 Query: 56 LANFLRYARDEGYLKCLGDGNLL-QTKIHNIGATLVGVDSFGNKYYEKLHDTQY 214 LAN ++ + +L LG + + +++N G +V +DS GN YE+++ Y Sbjct: 133 LANSVKRVDNVYFLDELGMPEAVWELEVNNFGPLIVAMDSHGNSIYEEVNKKVY 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,761,514 Number of Sequences: 219361 Number of extensions: 1675790 Number of successful extensions: 4808 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4686 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4797 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
