Clone Information

BLAST Search Result

Clone Name	bags9j20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	0.51
2	ref\|XM_788605.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	0.51
3	emb\|AJ133713.1\|TFU133713 Thermococcus fumicoland 557lig gene for...	40	0.51
4	ref\|NM_104313.3\| Arabidopsis thaliana ATPase, coupled to transme...	38	2.0
5	gb\|BT012413.1\| Arabidopsis thaliana At1g54350 mRNA, complete cds	38	2.0
6	gb\|BT012226.1\| Arabidopsis thaliana At1g54350 gene, complete cds	38	2.0
7	gb\|AC133101.4\| Mus musculus BAC clone RP23-154M23 from chromosom...	38	2.0
8	gb\|AC005287.4\| Arabidopsis thaliana chromosome I BAC F20D21 geno...	38	2.0
9	emb\|Z82214.23\|HS526I14 Human DNA sequence from clone RP3-526I14 ...	38	2.0
10	emb\|AL358794.19\| Human DNA sequence from clone RP11-430L17 on ch...	38	2.0
11	emb\|AL109966.36\|HSJ599G15 Human DNA sequence from clone RP4-599G...	38	2.0
12	emb\|AL161511.2\|ATCHRIV23 Arabidopsis thaliana DNA chromosome 4, ...	38	2.0
13	gb\|AF076275.1\|T15F16 Arabidopsis thaliana BAC T15F16	38	2.0
14	gb\|AC144632.4\| Mus musculus BAC clone RP23-106G16 from chromosom...	38	2.0
15	gb\|AC153812.1\| Homo sapiens chromosome 9 clone fa1022, complete ...	36	8.0
16	ref\|XM_524668.1\| PREDICTED: Pan troglodytes similar to hypotheti...	36	8.0
17	gb\|BC074423.1\| Xenopus laevis MGC84446 protein, mRNA (cDNA clone...	36	8.0
18	ref\|XM_864192.1\| PREDICTED: Bos taurus similar to Dynein interme...	36	8.0
19	gb\|AC165366.2\| Mus musculus BAC clone RP23-51H15 from chromosome...	36	8.0
20	gb\|AC160550.6\| Mus musculus chromosome 15, clone RP23-284G10, co...	36	8.0
21	gb\|AC164156.2\| Mus musculus BAC clone RP24-549I8 from chromosome...	36	8.0
22	ref\|XM_545041.2\| PREDICTED: Canis familiaris similar to N-deacet...	36	8.0
23	ref\|XM_846475.1\| PREDICTED: Canis familiaris similar to N-deacet...	36	8.0
24	ref\|XM_534410.2\| PREDICTED: Canis familiaris similar to disks la...	36	8.0
25	ref\|XM_860469.1\| PREDICTED: Canis familiaris similar to disks la...	36	8.0
26	ref\|XM_860451.1\| PREDICTED: Canis familiaris similar to disks la...	36	8.0
27	ref\|XM_860435.1\| PREDICTED: Canis familiaris similar to disks la...	36	8.0
28	ref\|XM_860414.1\| PREDICTED: Canis familiaris similar to disks la...	36	8.0
29	ref\|XM_860394.1\| PREDICTED: Canis familiaris similar to disks la...	36	8.0
30	gb\|AC129211.3\| Mus musculus BAC clone RP24-348E18 from chromosom...	36	8.0
31	gb\|AC129082.6\| Mus musculus BAC clone RP24-324M11 from chromosom...	36	8.0
32	gb\|AC124534.4\| Mus musculus BAC clone RP23-316G7 from chromosome...	36	8.0
33	gb\|AC102102.7\| Mus musculus chromosome 16, clone RP23-79F12, com...	36	8.0
34	gb\|AC101142.9\| Mus musculus chromosome 13, clone RP23-170P21, co...	36	8.0
35	gb\|AC163625.5\| Mus musculus BAC clone RP23-135K11 from chromosom...	36	8.0
36	emb\|CR392000.2\| Human DNA sequence from clone WI2-1959D15 on chr...	36	8.0
37	emb\|AL390295.10\| Human DNA sequence from clone RP11-254D22 on ch...	36	8.0
38	gb\|BC114074.1\| Bos taurus similar to dynein, cytoplasmic, interm...	36	8.0
39	emb\|AL590560.9\| Human DNA sequence from clone RP11-190A12 on chr...	36	8.0
40	emb\|AL513220.9\| Human DNA sequence from clone RP11-566C13 on chr...	36	8.0
41	emb\|AL360269.21\| Human DNA sequence from clone RP11-192I3 on chr...	36	8.0
42	emb\|AL359376.22\| Human DNA sequence from clone RP11-366K17 on ch...	36	8.0
43	emb\|AL353587.11\| Human DNA sequence from clone RP13-178D16 on ch...	36	8.0
44	gb\|AC175692.4\| Otolemur garnetti, clone XX-8153D2, complete sequ...	36	8.0
45	emb\|AL049588.11\|HSJ169P22 Human DNA sequence from clone RP1-169P...	36	8.0
46	gb\|AC093012.9\| Homo sapiens 12 BAC RP11-210N13 (Roswell Park Can...	36	8.0
47	emb\|AL645934.7\| Mouse DNA sequence from clone RP23-27P11 on chro...	36	8.0
48	gb\|AC027708.12\| Homo sapiens chromosome 15, clone RP11-82I10, co...	36	8.0
49	gb\|AC076972.16\| Homo sapiens 12 BAC RP11-624G19 (Roswell Park Ca...	36	8.0
50	emb\|BX511095.9\| Zebrafish DNA sequence from clone CH211-152J23 i...	36	8.0
51	gb\|AC113132.3\| Homo sapiens chromosome 18, clone RP11-433F3, com...	36	8.0
52	gb\|AC025479.8\| Homo sapiens chromosome 8, clone RP11-358J8, comp...	36	8.0
53	gb\|AC090393.9\| Homo sapiens chromosome 18, clone RP11-738B2, com...	36	8.0
54	gb\|DQ103593.1\| Olimarabidopsis pumila clone BAC 44L14, complete ...	36	8.0
55	gb\|AC026782.6\| Homo sapiens chromosome 5 clone CTD-2015A6, compl...	36	8.0
56	gb\|DP000053.1\| Oryctolagus cuniculus target 126 genomic scaffold	36	8.0
57	ref\|XM_688849.1\| PREDICTED: Danio rerio hypothetical protein LOC...	36	8.0
58	gb\|AC068399.9\| Homo sapiens chromosome 8, clone RP11-809K10, com...	36	8.0
59	gb\|AC154646.2\| Mus musculus BAC clone RP23-283B12 from chromosom...	36	8.0
60	gb\|AC118192.13\| Mus musculus chromosome 1, clone RP23-200C17, co...	36	8.0
61	dbj\|AK028884.1\| Mus musculus 10 days neonate skin cDNA, RIKEN fu...	36	8.0
62	emb\|BX322616.8\| Zebrafish DNA sequence from clone DKEY-21K24 in ...	36	8.0
63	gb\|AC108775.12\| Mus musculus chromosome 1, clone RP23-331M15, co...	36	8.0
64	emb\|AL672153.3\| Mouse DNA sequence from clone RP23-8C14 on chrom...	36	8.0
65	gb\|AC005517.7\|AC005517 Homo sapiens chromosome 17, clone RP11-72...	36	8.0
66	gb\|AC093910.2\| Homo sapiens BAC clone RP11-762H11 from 2, comple...	36	8.0
67	gb\|AC154182.2\| Mus musculus BAC clone RP23-471C19 from chromosom...	36	8.0
68	gb\|AC025259.49\| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Ca...	36	8.0
69	gb\|AC025154.31\| Homo sapiens 12 BAC RP11-469H8 (Roswell Park Can...	36	8.0
70	gb\|AC126456.3\| Homo sapiens BAC clone RP11-304P11 from 2, comple...	36	8.0
71	gb\|AC020594.6\| Homo sapiens BAC clone RP11-322P19 from 2, comple...	36	8.0
72	gb\|AC110080.2\| Homo sapiens BAC clone RP11-421K23 from 2, comple...	36	8.0
73	gb\|AC020978.10\| Homo sapiens chromosome 16 clone RP11-96D1, comp...	36	8.0
74	gb\|AC092586.2\| Homo sapiens BAC clone RP11-30H15 from 2, complet...	36	8.0
75	gb\|AC068774.22\| Homo sapiens 12 BAC RP11-133N2 (Roswell Park Can...	36	8.0
76	emb\|BX324117.16\| Mouse DNA sequence from clone RP23-389N3 on chr...	36	8.0
77	emb\|AL929026.10\| Mouse DNA sequence from clone RP23-332K7 on chr...	36	8.0
78	dbj\|AK121070.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	36	8.0
79	emb\|CR381605.5\| Zebrafish DNA sequence from clone CH211-156J19 i...	36	8.0
80	emb\|CT737235.2\| Pan troglodytes chromosome X clone PTB-029K08 ma...	36	8.0
81	dbj\|AP005366.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	36	8.0
82	gb\|AC132311.2\| Mus musculus BAC clone RP24-297P22 from 8, comple...	36	8.0
83	ref\|NG_000834.1\| Homo sapiens immunoglobulin kappa locus, proxim...	36	8.0
84	emb\|AL772240.7\| Mouse DNA sequence from clone RP23-284C20 on chr...	36	8.0
85	gb\|AC163389.2\| Mus musculus chromosome 1, clone RP23-397E23, com...	36	8.0
86	dbj\|AP001238.3\| Homo sapiens genomic DNA, chromosome 2p11.2, clo...	36	8.0

>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 0.51
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aaagaggaagaggctggcag 21
             ||||||||||||||||||||
Sbjct: 60598 aaagaggaagaggctggcag 60579

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>ref|XM_788605.1| PREDICTED: Strongylocentrotus purpuratus similar to
            Sodium/potassium/calcium exchanger 1
            (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
            Na-Ca+K exchanger) (LOC588946), partial mRNA
          Length = 4744

 Score = 40.1 bits (20), Expect = 0.51
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   ggagagaagaaagaggctga 48
            ||||||||||||||||||||
Sbjct: 2581 ggagagaagaaagaggctga 2600

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>emb|AJ133713.1|TFU133713 Thermococcus fumicoland 557lig gene for DNA ligase
          Length = 2391

 Score = 40.1 bits (20), Expect = 0.51
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 28   tggagagaagaaagaggctg 47
            ||||||||||||||||||||
Sbjct: 1310 tggagagaagaaagaggctg 1329

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>ref|NM_104313.3| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
           substances AT1G54350 mRNA, complete cds
          Length = 2312

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  agagaagaaagaggctgac 49
           |||||||||||||||||||
Sbjct: 809 agagaagaaagaggctgac 827

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>gb|BT012413.1| Arabidopsis thaliana At1g54350 mRNA, complete cds
          Length = 2121

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  agagaagaaagaggctgac 49
           |||||||||||||||||||
Sbjct: 774 agagaagaaagaggctgac 792

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>gb|BT012226.1| Arabidopsis thaliana At1g54350 gene, complete cds
          Length = 2276

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  agagaagaaagaggctgac 49
           |||||||||||||||||||
Sbjct: 807 agagaagaaagaggctgac 825

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>gb|AC133101.4| Mus musculus BAC clone RP23-154M23 from chromosome 15, complete
             sequence
          Length = 206189

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    ggagagaagaaagaggctg 47
             |||||||||||||||||||
Sbjct: 22933 ggagagaagaaagaggctg 22915

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>gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21 genomic sequence, complete
             sequence
          Length = 143186

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    agagaagaaagaggctgac 49
             |||||||||||||||||||
Sbjct: 59443 agagaagaaagaggctgac 59461

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>emb|Z82214.23|HS526I14 Human DNA sequence from clone RP3-526I14 on chromosome 22, complete
             sequence
          Length = 129389

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    agaagaaagaggctgacac 51
             |||||||||||||||||||
Sbjct: 80197 agaagaaagaggctgacac 80179

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>emb|AL358794.19| Human DNA sequence from clone RP11-430L17 on chromosome 1 Contains the
             5' end of a novel gene (KIAA1332), a ribosomal protein L22
             (RPL22) pseudogene, a putative MAPK activating protein
             (DKFZp566C0424), a novel gene (LOC374955) and two CpG
             islands, complete sequence
          Length = 124949

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    gagagaagaaagaggctga 48
             |||||||||||||||||||
Sbjct: 75757 gagagaagaaagaggctga 75739

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>emb|AL109966.36|HSJ599G15 Human DNA sequence from clone RP4-599G15 on chromosome 1p12-13.2
             Contains the 5' end of a glyceraldehyde-3-phosphate
             dehydrogenase (GAPD) pseudogene, two
             hydroxy-delta-5-steroid dehydrogenase 3 beta- and steroid
             delta-isomerase family (HSD3B) pseudogenes, a
             glyceraldehyde-3-phosphate dehydrogenase (GAPD)
             pseudogene, a novel gene, a novel gene (MGC45731), the 5'
             end of the PHGDH gene for phosphoglycerate dehydrogenase
             and a CpG island, complete sequence
          Length = 112616

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    tggagagaagaaagaggct 46
             |||||||||||||||||||
Sbjct: 14036 tggagagaagaaagaggct 14018

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>emb|AL161511.2|ATCHRIV23 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 23
          Length = 197306

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 29     ggagagaagaaagaggctg 47
              |||||||||||||||||||
Sbjct: 184059 ggagagaagaaagaggctg 184077

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>gb|AF076275.1|T15F16 Arabidopsis thaliana BAC T15F16
          Length = 97494

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    ggagagaagaaagaggctg 47
             |||||||||||||||||||
Sbjct: 60162 ggagagaagaaagaggctg 60144

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>gb|AC144632.4| Mus musculus BAC clone RP23-106G16 from chromosome 15, complete
             sequence
          Length = 206265

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    ggagagaagaaagaggctg 47
             |||||||||||||||||||
Sbjct: 64343 ggagagaagaaagaggctg 64361

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>gb|AC153812.1| Homo sapiens chromosome 9 clone fa1022, complete sequence
          Length = 38508

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 33    agaagaaagaggctgaca 50
             ||||||||||||||||||
Sbjct: 18878 agaagaaagaggctgaca 18861

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>ref|XM_524668.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ40906
           (LOC469283), mRNA
          Length = 2136

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 29  ggagagaagaaagaggct 46
           ||||||||||||||||||
Sbjct: 814 ggagagaagaaagaggct 831

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>gb|BC074423.1| Xenopus laevis MGC84446 protein, mRNA (cDNA clone MGC:84446
            IMAGE:7019775), complete cds
          Length = 5792

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 38   aaagaggctgacactgtt 55
            ||||||||||||||||||
Sbjct: 2794 aaagaggctgacactgtt 2811

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>ref|XM_864192.1| PREDICTED: Bos taurus similar to Dynein intermediate chain 1,
           cytosolic (DH IC-1) (Cytoplasmic dynein intermediate
           chain 1) (LOC613436), partial mRNA
          Length = 497

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 33  agaagaaagaggctgaca 50
           ||||||||||||||||||
Sbjct: 105 agaagaaagaggctgaca 122

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>gb|AC165366.2| Mus musculus BAC clone RP23-51H15 from chromosome 13, complete sequence
          Length = 241514

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 27     ttggagagaagaaagagg 44
              ||||||||||||||||||
Sbjct: 132502 ttggagagaagaaagagg 132519

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>gb|AC160550.6| Mus musculus chromosome 15, clone RP23-284G10, complete sequence
          Length = 232182

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 2      aaagaggaagaggctggc 19
              ||||||||||||||||||
Sbjct: 146181 aaagaggaagaggctggc 146164

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>gb|AC164156.2| Mus musculus BAC clone RP24-549I8 from chromosome 1, complete sequence
          Length = 173764

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 27     ttggagagaagaaagaggctga 48
              ||||||||||||| ||||||||
Sbjct: 126825 ttggagagaagaatgaggctga 126846

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>ref|XM_545041.2| PREDICTED: Canis familiaris similar to
            N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
            3, transcript variant 1 (LOC487918), mRNA
          Length = 2953

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 37   gaaagaggctgacactgt 54
            ||||||||||||||||||
Sbjct: 1063 gaaagaggctgacactgt 1080

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>ref|XM_846475.1| PREDICTED: Canis familiaris similar to
            N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
            3, transcript variant 2 (LOC487918), mRNA
          Length = 3180

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 37   gaaagaggctgacactgt 54
            ||||||||||||||||||
Sbjct: 1290 gaaagaggctgacactgt 1307

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>ref|XM_534410.2| PREDICTED: Canis familiaris similar to disks large-associated protein
            4 isoform b, transcript variant 1 (LOC477219), mRNA
          Length = 3855

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 28   tggagagaagaaagaggc 45
            ||||||||||||||||||
Sbjct: 3754 tggagagaagaaagaggc 3737

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>ref|XM_860469.1| PREDICTED: Canis familiaris similar to disks large-associated protein
            4 isoform b, transcript variant 8 (LOC477219), mRNA
          Length = 2526

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 28   tggagagaagaaagaggc 45
            ||||||||||||||||||
Sbjct: 2425 tggagagaagaaagaggc 2408

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>ref|XM_860451.1| PREDICTED: Canis familiaris similar to disks large-associated protein
            4 isoform b, transcript variant 7 (LOC477219), mRNA
          Length = 2426

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 28   tggagagaagaaagaggc 45
            ||||||||||||||||||
Sbjct: 2325 tggagagaagaaagaggc 2308

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>ref|XM_860435.1| PREDICTED: Canis familiaris similar to disks large-associated protein
            4 isoform b, transcript variant 6 (LOC477219), mRNA
          Length = 2486

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 28   tggagagaagaaagaggc 45
            ||||||||||||||||||
Sbjct: 2385 tggagagaagaaagaggc 2368

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>ref|XM_860414.1| PREDICTED: Canis familiaris similar to disks large-associated protein
            4 isoform b, transcript variant 5 (LOC477219), mRNA
          Length = 2257

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 28   tggagagaagaaagaggc 45
            ||||||||||||||||||
Sbjct: 2156 tggagagaagaaagaggc 2139

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>ref|XM_860394.1| PREDICTED: Canis familiaris similar to disks large-associated protein
            4 isoform b, transcript variant 4 (LOC477219), mRNA
          Length = 3846

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 28   tggagagaagaaagaggc 45
            ||||||||||||||||||
Sbjct: 3745 tggagagaagaaagaggc 3728

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>gb|AC129211.3| Mus musculus BAC clone RP24-348E18 from chromosome 8, complete sequence
          Length = 167455

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 29     ggagagaagaaagaggct 46
              ||||||||||||||||||
Sbjct: 151650 ggagagaagaaagaggct 151633

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>gb|AC129082.6| Mus musculus BAC clone RP24-324M11 from chromosome 8, complete sequence
          Length = 141671

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 29     ggagagaagaaagaggct 46
              ||||||||||||||||||
Sbjct: 141641 ggagagaagaaagaggct 141658

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>gb|AC124534.4| Mus musculus BAC clone RP23-316G7 from chromosome 1, complete sequence
          Length = 177675

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 27     ttggagagaagaaagaggctga 48
              ||||||||||||| ||||||||
Sbjct: 147703 ttggagagaagaatgaggctga 147682

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>gb|AC102102.7| Mus musculus chromosome 16, clone RP23-79F12, complete sequence
          Length = 194828

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     ttggagagaagaaagagg 44
              ||||||||||||||||||
Sbjct: 148989 ttggagagaagaaagagg 148972

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>gb|AC101142.9| Mus musculus chromosome 13, clone RP23-170P21, complete sequence
          Length = 176563

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     ttggagagaagaaagagg 44
              ||||||||||||||||||
Sbjct: 129714 ttggagagaagaaagagg 129697

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>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence
          Length = 228750

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      agaggaagaggctggcag 21
              ||||||||||||||||||
Sbjct: 146792 agaggaagaggctggcag 146775

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>emb|CR392000.2| Human DNA sequence from clone WI2-1959D15 on chromosome 9, complete
            sequence
          Length = 32108

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 33   agaagaaagaggctgaca 50
            ||||||||||||||||||
Sbjct: 5640 agaagaaagaggctgaca 5623

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>emb|AL390295.10| Human DNA sequence from clone RP11-254D22 on chromosome 13, complete
             sequence
          Length = 98339

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 33    agaagaaagaggctgaca 50
             ||||||||||||||||||
Sbjct: 82584 agaagaaagaggctgaca 82567

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>gb|BC114074.1| Bos taurus similar to dynein, cytoplasmic, intermediate polypeptide
           1, mRNA (cDNA clone MGC:137597 IMAGE:8173317), complete
           cds
          Length = 2580

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 33  agaagaaagaggctgaca 50
           ||||||||||||||||||
Sbjct: 281 agaagaaagaggctgaca 298

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>emb|AL590560.9| Human DNA sequence from clone RP11-190A12 on chromosome 1 Contains the
             gene for a novel protein (FLJ20442), the gene for a novel
             protein similar to IgG Fc fragment receptors (FCGRs), the
             SLAMF8 gene for SLAM family member 8, two genes for novel
             proteins, the gene for nasopharyngeal epithelium specific
             protein 1 (NESG1) and two CpG islands, complete sequence
          Length = 138862

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 30    gagagaagaaagaggctg 47
             ||||||||||||||||||
Sbjct: 75913 gagagaagaaagaggctg 75930

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>emb|AL513220.9| Human DNA sequence from clone RP11-566C13 on chromosome 1 Contains the
             5' end of the gene for nucleolar GTPase (HUMAUANTIG), the
             gene for a novel protein (FLJ40906) and a CpG island,
             complete sequence
          Length = 94638

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 29    ggagagaagaaagaggct 46
             ||||||||||||||||||
Sbjct: 63191 ggagagaagaaagaggct 63174

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>emb|AL360269.21| Human DNA sequence from clone RP11-192I3 on chromosome 1 Contains the
             WNT9A gene for wingless-type MMTV integration site family,
             member 9A and a CpG island, complete sequence
          Length = 141703

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 33    agaagaaagaggctgaca 50
             ||||||||||||||||||
Sbjct: 13965 agaagaaagaggctgaca 13982

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>emb|AL359376.22| Human DNA sequence from clone RP11-366K17 on chromosome 1, complete
            sequence
          Length = 46975

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    agaggaagaggctggcag 21
            ||||||||||||||||||
Sbjct: 3369 agaggaagaggctggcag 3386

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>emb|AL353587.11| Human DNA sequence from clone RP13-178D16 on chromosome Xq11.1-13.1
             Contains an actin-related protein 3 (ACTR3) pseudogene and
             a novel pseudogene, complete sequence
          Length = 49852

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 33    agaagaaagaggctgaca 50
             ||||||||||||||||||
Sbjct: 13562 agaagaaagaggctgaca 13579

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>gb|AC175692.4| Otolemur garnetti, clone XX-8153D2, complete sequence
          Length = 44850

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 28    tggagagaagaaagaggc 45
             ||||||||||||||||||
Sbjct: 24869 tggagagaagaaagaggc 24886

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>emb|AL049588.11|HSJ169P22 Human DNA sequence from clone RP1-169P22 on chromosome Xq27.1-28
             Contains two pseudogenes similar to part of ribonucleotide
             reductase M2 polypeptide (RRM2), complete sequence
          Length = 150579

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     aagaggaagaggctggca 20
             ||||||||||||||||||
Sbjct: 19662 aagaggaagaggctggca 19645

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>gb|AC093012.9| Homo sapiens 12 BAC RP11-210N13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 118572

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 34     gaagaaagaggctgacac 51
              ||||||||||||||||||
Sbjct: 117028 gaagaaagaggctgacac 117045

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>emb|AL645934.7| Mouse DNA sequence from clone RP23-27P11 on chromosome 11, complete
             sequence
          Length = 225839

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 29    ggagagaagaaagaggct 46
             ||||||||||||||||||
Sbjct: 64053 ggagagaagaaagaggct 64070

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>gb|AC027708.12| Homo sapiens chromosome 15, clone RP11-82I10, complete sequence
          Length = 176613

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 35    aagaaagaggctgacact 52
             ||||||||||||||||||
Sbjct: 69575 aagaaagaggctgacact 69592

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>gb|AC076972.16| Homo sapiens 12 BAC RP11-624G19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161540

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 34     gaagaaagaggctgacac 51
              ||||||||||||||||||
Sbjct: 161080 gaagaaagaggctgacac 161063

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>emb|BX511095.9| Zebrafish DNA sequence from clone CH211-152J23 in linkage group 1,
              complete sequence
          Length = 152368

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 30     gagagaagaaagaggctg 47
              ||||||||||||||||||
Sbjct: 128690 gagagaagaaagaggctg 128673

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>gb|AC113132.3| Homo sapiens chromosome 18, clone RP11-433F3, complete sequence
          Length = 170609

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 29     ggagagaagaaagaggctgaca 50
              |||||| |||||||||||||||
Sbjct: 128370 ggagaggagaaagaggctgaca 128391

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>gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, complete sequence
          Length = 176647

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 35    aagaaagaggctgacact 52
             ||||||||||||||||||
Sbjct: 27286 aagaaagaggctgacact 27269

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>gb|AC090393.9| Homo sapiens chromosome 18, clone RP11-738B2, complete sequence
          Length = 184486

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 29     ggagagaagaaagaggctgaca 50
              |||||| |||||||||||||||
Sbjct: 159337 ggagaggagaaagaggctgaca 159316

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>gb|DQ103593.1| Olimarabidopsis pumila clone BAC 44L14, complete sequence
          Length = 118342

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 27     ttggagagaagaaagagg 44
              ||||||||||||||||||
Sbjct: 114478 ttggagagaagaaagagg 114495

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>gb|AC026782.6| Homo sapiens chromosome 5 clone CTD-2015A6, complete sequence
          Length = 214025

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 34     gaagaaagaggctgacac 51
              ||||||||||||||||||
Sbjct: 112156 gaagaaagaggctgacac 112173

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>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 29     ggagagaagaaagaggct 46
              ||||||||||||||||||
Sbjct: 412376 ggagagaagaaagaggct 412359



 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 29     ggagagaagaaagaggct 46
              ||||||||||||||||||
Sbjct: 410353 ggagagaagaaagaggct 410336

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>ref|XM_688849.1| PREDICTED: Danio rerio hypothetical protein LOC565580 (LOC565580),
           mRNA
          Length = 2253

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 31  agagaagaaagaggctga 48
           ||||||||||||||||||
Sbjct: 420 agagaagaaagaggctga 437

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>gb|AC068399.9| Homo sapiens chromosome 8, clone RP11-809K10, complete sequence
          Length = 195367

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 35     aagaaagaggctgacact 52
              ||||||||||||||||||
Sbjct: 167837 aagaaagaggctgacact 167820

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>gb|AC154646.2| Mus musculus BAC clone RP23-283B12 from chromosome 14, complete sequence
          Length = 189102

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                        
Query: 31     agagaagaaagaggctgacactgttg 56
              ||||||||||||||  ||||||||||
Sbjct: 100968 agagaagaaagagggcgacactgttg 100943

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>gb|AC118192.13| Mus musculus chromosome 1, clone RP23-200C17, complete sequence
          Length = 187935

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    ttggagagaagaaagagg 44
             ||||||||||||||||||
Sbjct: 43257 ttggagagaagaaagagg 43274

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>dbj|AK028884.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732466E24 product:unclassifiable, full
           insert sequence
          Length = 3423

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 29  ggagagaagaaagaggct 46
           ||||||||||||||||||
Sbjct: 949 ggagagaagaaagaggct 966

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>emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in linkage group 25,
              complete sequence
          Length = 232304

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      agaggaagaggctggcag 21
              ||||||||||||||||||
Sbjct: 122158 agaggaagaggctggcag 122141

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>gb|AC108775.12| Mus musculus chromosome 1, clone RP23-331M15, complete sequence
          Length = 188126

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      gaaagaggaagaggctgg 18
              ||||||||||||||||||
Sbjct: 115498 gaaagaggaagaggctgg 115515

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>emb|AL672153.3| Mouse DNA sequence from clone RP23-8C14 on chromosome 2, complete
              sequence
          Length = 137628

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 27     ttggagagaagaaagaggctga 48
              |||||||||||||||| |||||
Sbjct: 133649 ttggagagaagaaagatgctga 133670

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>gb|AC005517.7|AC005517 Homo sapiens chromosome 17, clone RP11-726O12, complete sequence
          Length = 106210

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    agagaagaaagaggctga 48
             ||||||||||||||||||
Sbjct: 84940 agagaagaaagaggctga 84957

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>gb|AC093910.2| Homo sapiens BAC clone RP11-762H11 from 2, complete sequence
          Length = 166731

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 33    agaagaaagaggctgaca 50
             ||||||||||||||||||
Sbjct: 72788 agaagaaagaggctgaca 72771

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>gb|AC154182.2| Mus musculus BAC clone RP23-471C19 from chromosome 16, complete sequence
          Length = 180782

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 27     ttggagagaagaaagagg 44
              ||||||||||||||||||
Sbjct: 173636 ttggagagaagaaagagg 173653

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>gb|AC025259.49| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 212622

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     agaggaagaggctggcag 21
             ||||||||||||||||||
Sbjct: 75773 agaggaagaggctggcag 75790

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>gb|AC025154.31| Homo sapiens 12 BAC RP11-469H8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164813

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     agaggaagaggctggcag 21
             ||||||||||||||||||
Sbjct: 13151 agaggaagaggctggcag 13168

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>gb|AC126456.3| Homo sapiens BAC clone RP11-304P11 from 2, complete sequence
          Length = 117907

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 33   agaagaaagaggctgaca 50
            ||||||||||||||||||
Sbjct: 6203 agaagaaagaggctgaca 6186

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>gb|AC020594.6| Homo sapiens BAC clone RP11-322P19 from 2, complete sequence
          Length = 193410

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    agagaagaaagaggctga 48
             ||||||||||||||||||
Sbjct: 30614 agagaagaaagaggctga 30631

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>gb|AC110080.2| Homo sapiens BAC clone RP11-421K23 from 2, complete sequence
          Length = 172465

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 34    gaagaaagaggctgacac 51
             ||||||||||||||||||
Sbjct: 53493 gaagaaagaggctgacac 53510

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>gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, complete sequence
          Length = 164293

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 33    agaagaaagaggctgaca 50
             ||||||||||||||||||
Sbjct: 84920 agaagaaagaggctgaca 84903

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>gb|AC092586.2| Homo sapiens BAC clone RP11-30H15 from 2, complete sequence
          Length = 130636

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 33    agaagaaagaggctgaca 50
             ||||||||||||||||||
Sbjct: 85892 agaagaaagaggctgaca 85909

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>gb|AC068774.22| Homo sapiens 12 BAC RP11-133N2 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 29789

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 34   gaagaaagaggctgacac 51
            ||||||||||||||||||
Sbjct: 4717 gaagaaagaggctgacac 4700

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>emb|BX324117.16| Mouse DNA sequence from clone RP23-389N3 on chromosome X, complete
             sequence
          Length = 155139

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    ttggagagaagaaagagg 44
             ||||||||||||||||||
Sbjct: 89203 ttggagagaagaaagagg 89220

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>emb|AL929026.10| Mouse DNA sequence from clone RP23-332K7 on chromosome 2, complete
             sequence
          Length = 124244

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 36    agaaagaggctgacactg 53
             ||||||||||||||||||
Sbjct: 99177 agaaagaggctgacactg 99194

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>dbj|AK121070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061K04,
          full insert sequence
          Length = 720

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 27 ttggagagaagaaagagg 44
          ||||||||||||||||||
Sbjct: 19 ttggagagaagaaagagg 2

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>emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 in linkage group 21,
             complete sequence
          Length = 180526

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     agaggaagaggctggcag 21
             ||||||||||||||||||
Sbjct: 57059 agaggaagaggctggcag 57076

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>emb|CT737235.2| Pan troglodytes chromosome X clone PTB-029K08 map Xq28, complete sequence
          Length = 179483

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 3      aagaggaagaggctggca 20
              ||||||||||||||||||
Sbjct: 129071 aagaggaagaggctggca 129054

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>dbj|AP005366.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB565H3, complete
             sequence
          Length = 101002

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 35    aagaaagaggctgacact 52
             ||||||||||||||||||
Sbjct: 65943 aagaaagaggctgacact 65960

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>gb|AC132311.2| Mus musculus BAC clone RP24-297P22 from 8, complete sequence
          Length = 164783

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     agaggaagaggctggcag 21
             ||||||||||||||||||
Sbjct: 22432 agaggaagaggctggcag 22415

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>ref|NG_000834.1| Homo sapiens immunoglobulin kappa locus, proximal V-cluster and J-C
              cluster (IGK-proximal) on chromosome 2
          Length = 515442

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 34     gaagaaagaggctgacac 51
              ||||||||||||||||||
Sbjct: 129751 gaagaaagaggctgacac 129734

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>emb|AL772240.7| Mouse DNA sequence from clone RP23-284C20 on chromosome 4, complete
             sequence
          Length = 93232

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     agaggaagaggctggcag 21
             ||||||||||||||||||
Sbjct: 54342 agaggaagaggctggcag 54325

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>gb|AC163389.2| Mus musculus chromosome 1, clone RP23-397E23, complete sequence
          Length = 203933

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    ttggagagaagaaagagg 44
             ||||||||||||||||||
Sbjct: 65514 ttggagagaagaaagagg 65497

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>dbj|AP001238.3| Homo sapiens genomic DNA, chromosome 2p11.2, clone:cos780
          Length = 36886

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 34    gaagaaagaggctgacac 51
             ||||||||||||||||||
Sbjct: 10209 gaagaaagaggctgacac 10192


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 792,129
Number of Sequences: 3902068
Number of extensions: 792129
Number of successful extensions: 257431
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 257159
Number of HSP's gapped (non-prelim): 272
length of query: 56
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 36
effective length of database: 17,155,003,908
effective search space: 617580140688
effective search space used: 617580140688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result