>CHAC_ECOLI (P39163) Cation transport protein chaC|
          Length = 231

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 25/75 (33%), Positives = 39/75 (52%)
 Frame = +3

Query: 204 DVLVFVSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMEKALSNISHEDDS 383
           + +VF+  P    +  Y      + +A  IA ASGP G N  YLFS+E+ L  +  +DD 
Sbjct: 149 NAIVFIMDPR---HPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDG 205

Query: 384 IIVLADEVRKVLGRS 428
           +  L   V+K+L  +
Sbjct: 206 LNDLLVSVKKLLAEN 220

>YEZ3_YEAST (P32656) Hypothetical 26.3 kDa protein in RAD4-CHD1 intergenic|
           region
          Length = 232

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
 Frame = +3

Query: 18  ARTCTLESEDEAICWGIAYCVKGGLEKEREAMQYLERRECE----YDQKISVDFYKD--- 176
           + +  ++  D+ +  G+ Y +    E  +E  +YL  RE      ++ ++ ++  ++   
Sbjct: 79  SESAPIQDPDDLVTIGVVYYIPP--EHAQEVREYLNVREQNGYTLHEVEVHLETNREHEA 136

Query: 177 --GNSLEPA---------VTDVLVFVSTPDPVGNKYYLGPAALEDMARQIATASGPNGYN 323
             G +LE           V    V++ T D   N+ ++GP  +++ A+ IA + GP+G N
Sbjct: 137 ELGEALEQLPRHNKSGKRVLLTSVYIGTID---NEAFVGPETVDETAKVIAVSHGPSGSN 193

Query: 324 RDYLFSMEKALSNI 365
            +YL  +E+AL+ +
Sbjct: 194 YEYLAKLEQALAQM 207

>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)|
          Length = 524

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 461 WYVGAGNLLLCRPAQHLPHLIRKHNDRVVFMAYIGQ 354
           WYV  GN+   + A+H+ H++    +RVV+ A  G+
Sbjct: 285 WYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGK 320

>LRRC6_MOUSE (O88978) Leucine-rich repeat-containing protein 6 (Leucine-rich|
           testis-specific protein) (Testis-specific leucine-rich
           repeat protein)
          Length = 473

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
 Frame = +3

Query: 69  AYCVKGGLEKEREAMQYLERRECEYDQKISVDF----YKDGNSLEPAVTDVLVFVSTPDP 236
           AYC++   EKE    +  E  E E  +K S  F    Y D ++  P+ T+   +   P+ 
Sbjct: 175 AYCLRRAKEKEEAQRKLEEENESEDKKKSSTGFDGHWYTDIHTACPSATENQDYPQVPET 234

Query: 237 VGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMEKALSNISHEDDSIIVLADEVRKV 416
              ++       +D+   +A       +N+  LF+ E  L  + H         ++ RK 
Sbjct: 235 QEEQH--NTKESDDIEDDLAF------WNKPSLFTPESRLETLRH--------MEKQRKA 278

Query: 417 LGRSTEKK 440
             + +EKK
Sbjct: 279 QDKLSEKK 286

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
 Frame = +3

Query: 219  VSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMEKALSN--ISHEDDSI-- 386
            +S   P G +  LGPA +  + +Q   A GP G +R  L +  + LS+  ++ +   +  
Sbjct: 3515 LSPQPPQGPQGMLGPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSSPQLAQQGQGLMG 3574

Query: 387  --IVLADEVRKVLGRSTEKKVTG---SDVPLKSHTPAVHISALPEGTV 515
              +V A + ++      +  + G       L SH+    +SA P G++
Sbjct: 3575 HRLVTAQQQQQQQQHQQQGSMAGLSHLQQSLMSHSGQPKLSAQPMGSL 3622

>ILVC_CHLTE (Q8KER7) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 330

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 33  LESEDEAICWGIAYCVKGGLEKEREAMQYLERR--ECEYDQKISVDFYKDG 179
           L  E   +C G A  +K G E   EA    E    EC ++ K+ VD Y +G
Sbjct: 191 LFGEQAVLCGGSAELIKAGFETLTEAGYPAELAYFECMHELKLIVDLYYEG 241

>ILVC_CHLCH (Q3APC3) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 330

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 33  LESEDEAICWGIAYCVKGGLEKEREA--MQYLERRECEYDQKISVDFYKDG 179
           L  E   +C G A  +K G E   EA   + L   EC ++ K+ VD Y +G
Sbjct: 191 LFGEQAVLCGGSAELIKAGFETLVEAGYPEELAYFECMHELKLIVDLYYEG 241

>DOCK1_MOUSE (Q8BUR4) Dedicator of cytokinesis protein 1 (180 kDa protein|
           downstream of CRK) (DOCK180) (Fragments)
          Length = 1027

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 604 ENVKSEYGQRKMPS-VSLIQPCRSSCYVETATVPSGRAEMCTAGVCDFNGTSEP 446
           E V+ +YG R MPS +   +  R    V + T+PS    +  A V  F+  S P
Sbjct: 768 EKVEKQYGVRTMPSGLDDRRGSRPRSMVRSFTMPSSSRPLSVASVSSFSSDSTP 821

>Y929_TREPA (O83899) Hypothetical protein TP0929|
          Length = 256

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 452 RRTIKIAYSSCAHLCSSRGHRRGFNIARRAAWLD*RNRWHFPLTILTLDILP 607
           R TI+      AH  S+R  + GF  A ++  LD      FP+    +D+LP
Sbjct: 93  RGTIERFLEEEAHTFSTRAKQGGFTAAAQSLNLDVHTSRSFPINFGNVDVLP 144

>VATI1_TREPA (O83444) V-type ATP synthase subunit I 1 (EC 3.6.3.14) (V-type|
           ATPase subunit I 1)
          Length = 622

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 422 AQHLPHLIRKHNDRVVFMAYIGQCLLH*EQVVP 324
           A+ +  ++R H+DRV     I QC+ H E+  P
Sbjct: 83  AEAVEQIVRTHSDRVELAQRIAQCIAHLERCEP 115

>LYTA_STAAU (P24556) Autolysin (EC 3.5.1.28) (N-acetylmuramoyl-L-alanine|
           amidase)
          Length = 481

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 168 YKDGNSLEPAVTDVLVFVSTPDPVGNKYYLGPAALEDMARQIAT 299
           Y  GN++  A+ +  V   T + +GNKYY G    + M    AT
Sbjct: 239 YVSGNTVWQALDESQVGWHTANQIGNKYYYGIEVCQSMGADNAT 282

>MRC1_SCHPO (Q9P7T4) Mediator of replication checkpoint protein 1 (DNA|
            replication checkpoint mediator mrc1)
          Length = 1019

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +3

Query: 270  LEDMARQIATASGPNGYNRDYLFSMEKALSNISHEDDSIIVLADEVRKVLGRSTEKKV-- 443
            +E+   +I ++ GPN  +R YL       ++ ++  + ++ +   VRK++  S  +K+  
Sbjct: 886  MEEELSEIFSSGGPNVVDRVYLKKSSTRHTSDNNSLEEVLPIFPGVRKLVSNSQSEKIGD 945

Query: 444  --TGSDVPLKSH-TPAVHISALPEG 509
                + +  KS+ TP +  +  P+G
Sbjct: 946  LSNDNSMGAKSYKTPIISSTQRPQG 970

>RLUF_SALTY (Q8ZKL1) Ribosomal large subunit pseudouridine synthase F (EC|
           5.4.99.-) (rRNA-uridine isomerase F) (rRNA
           pseudouridylate synthase F)
          Length = 289

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
 Frame = +3

Query: 72  YCVKGGLEKEREAMQYLE--------RRECEYDQKISVDFYK-DGNSLEPAVTDVLVFVS 224
           Y  + G+   REA +++E        +R    DQ ++ D  K +G  +EP   D LV ++
Sbjct: 12  YISESGICSRREADRFIEQGNVFINGKRAAIGDQVVAGDIVKVNGRLIEPREADDLVLIA 71

Query: 225 TPDPVG 242
              PVG
Sbjct: 72  LNKPVG 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,119,298
Number of Sequences: 219361
Number of extensions: 2080880
Number of successful extensions: 5331
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5331
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)