>IFB1_CAEEL (Q19289) Intermediate filament protein ifb-1 (Intermediate filament|
           protein B1) (IF-B1) (Cel IF B1)
          Length = 589

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 385 QLQDDELHVTAEPVQWWDVCRRTNWPERDQDIANVVFHNQLNSMM 519
           QL D+E  VTA+  + W+  ++      D+ I  + F NQ+ ++M
Sbjct: 207 QLTDEEKRVTADNSRIWEELQKARSDLDDETIGRIDFQNQVQTLM 251

>MNB_DROME (P49657) Serine/threonine-protein kinase minibrain (EC 2.7.12.1)|
          Length = 908

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 457 SLSSGKHPTTELAQR*HATHHLGAANGYQTQLLGCYQRIQN 335
           SL S  HP   LA   H+T+ LG+ N       GC+    N
Sbjct: 619 SLQSNAHPPPSLANSHHSTNSLGSLNHISPGSTGCHNNNSN 659

>SOS1_HUMAN (Q07889) Son of sevenless homolog 1 (SOS-1)|
          Length = 1333

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
 Frame = +2

Query: 257 RLMLWSIYWCIHHLVMLFNM---------NFCLLRVLNPLITAQQLGLVAICSSKMMSCM 409
           RL+L  +Y C+H+  +L  +           CL + +  L+  Q  G+  ICS  +    
Sbjct: 341 RLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQS-GMEKICSKSLAKRR 399

Query: 410 LPLS--QFSGGMFAGGQTGLKETRTLQ 484
           L  S  +F      G Q  +K+   +Q
Sbjct: 400 LSESACRFYSQQMKGKQLAIKKMNEIQ 426

>GLIS1_HUMAN (Q8NBF1) Zinc finger protein GLIS1 (GLI-similar 1)|
          Length = 620

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
 Frame = -1

Query: 490 QHLQCPGLFQASLSSGKHPTTELAQR*HATHHLGAANGYQTQLLGCYQRIQNPKKAEVHV 311
           QH  C   F  S    KH  T L  +            Y  Q+ GC +R  +P     HV
Sbjct: 295 QHPGCQKAFSNSSDRAKHQRTHLDTK-----------PYACQIPGCSKRYTDPSSLRKHV 343

Query: 310 E*H---DQMVNTPINAPKH*PSTE 248
           + H   +Q V   ++A    P TE
Sbjct: 344 KAHSAKEQQVRKKLHAG---PDTE 364

>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor|
          Length = 662

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
 Frame = +3

Query: 171 KWKT---IRAIWCYHCYFLQFHLQR---FSAGSVEG*CFGAFIGVFTIWSCYS---T*TS 323
           KWKT   + +  C    F  F +     +  GS     FG  + +  +W C S   T   
Sbjct: 428 KWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIG 487

Query: 324 AFFGF 338
           A+FGF
Sbjct: 488 AYFGF 492

>JIP3_HUMAN (Q9UPT6) C-jun-amino-terminal kinase-interacting protein 3|
            (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase
            scaffold protein 3) (Mitogen-activated protein kinase
            8-interacting protein 3)
          Length = 1334

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 583  HHHLME*NQNGHYPHSQKCLVSSYCLVGCGIQ---HLQCPGLFQASLSSGKHPTTE 425
            ++HLM+    GH  HS +C+   Y  V CG +   H+  P   Q   S   HP  E
Sbjct: 1034 NYHLMD---LGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQIEKSFDAHPRRE 1086

>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor|
          Length = 663

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
 Frame = +3

Query: 171 KWKT---IRAIWCYHCYFLQFHLQR---FSAGSVEG*CFGAFIGVFTIWSCYS---T*TS 323
           KWKT   + +  C    F  F +     +  GS     FG  + +  +W C S   T   
Sbjct: 429 KWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIG 488

Query: 324 AFFGF 338
           A+FGF
Sbjct: 489 AYFGF 493

>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor|
          Length = 663

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
 Frame = +3

Query: 171 KWKT---IRAIWCYHCYFLQFHLQR---FSAGSVEG*CFGAFIGVFTIWSCYS---T*TS 323
           KWKT   + +  C    F  F +     +  GS     FG  + +  +W C S   T   
Sbjct: 429 KWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIG 488

Query: 324 AFFGF 338
           A+FGF
Sbjct: 489 AYFGF 493

>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor|
           (p76)
          Length = 663

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
 Frame = +3

Query: 171 KWKT---IRAIWCYHCYFLQFHLQR---FSAGSVEG*CFGAFIGVFTIWSCYS---T*TS 323
           KWKT   + +  C    F  F +     +  GS     FG  + +  +W C S   T   
Sbjct: 429 KWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIG 488

Query: 324 AFFGF 338
           A+FGF
Sbjct: 489 AYFGF 493


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.132    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,296,434
Number of Sequences: 219361
Number of extensions: 1936518
Number of successful extensions: 3420
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3416
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)