ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9j08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome... 377 e-101
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 377 e-101
3dbj|AK099795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 377 e-101
4dbj|AK072244.1| Oryza sativa (japonica cultivar-group) cDNA clon... 377 e-101
5gb|AC154815.2| Mus musculus BAC clone RP24-534C22 from chromosom... 44 0.51
6gb|AF121782.1| Homo sapiens chromosome 21q22.3 PAC 206A10, compl... 44 0.51
7emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080 44 0.51
8emb|BX322646.10| Zebrafish DNA sequence from clone DKEYP-11A1 in... 44 0.51
9emb|BX470241.5| Zebrafish DNA sequence from clone CH211-240J13 i... 44 0.51
10gb|AC154319.2| Mus musculus BAC clone RP23-331I13 from chromosom... 44 0.51
11dbj|BS000162.1| Pan troglodytes chromosome 22 clone:PTB-060F12, ... 44 0.51
12emb|AL954228.1|CH179K04 Pan troglodytes chromosome 22 BAC CH251-... 44 0.51
13gb|AC133194.3| Mus musculus BAC clone RP23-403H14 from 3, comple... 44 0.51
14gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete s... 42 2.0
15emb|AL133341.12| Human DNA sequence from clone RP3-342O24 on chr... 42 2.0
16gb|AY613855.1| Oikopleura dioica clone BACOIKO007 10xi11, comple... 42 2.0
17emb|BX004889.8| Zebrafish DNA sequence from clone DKEY-65P15 in ... 42 2.0
18ref|NM_117770.3| Arabidopsis thaliana catalytic AT4G16690 mRNA, ... 40 8.0
19gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, com... 40 8.0
20gb|AC107763.25| Mus musculus chromosome 5, clone RP23-180F3, com... 40 8.0
21gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, comp... 40 8.0
22ref|XM_646201.1| Entamoeba histolytica HM-1:IMSS glycosyltransfe... 40 8.0
23emb|AL357150.7| Human DNA sequence from clone RP11-122C9 on chro... 40 8.0
24emb|AL158812.10| Human DNA sequence from clone RP11-157E11 on ch... 40 8.0
25emb|AL031390.4|HS197L1 Human DNA sequence from clone RP1-197L1 o... 40 8.0
26emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 8.0
27emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, ... 40 8.0
28emb|CR377201.10| Zebrafish DNA sequence from clone CH211-210H21 ... 40 8.0
29emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in... 40 8.0
30ref|NM_058069.3| Drosophila melanogaster TNF-receptor-associated... 40 8.0
31gb|AC097521.2| Homo sapiens BAC clone RP11-565A3 from 4, complet... 40 8.0
32gb|AC092232.1|AC092232 Drosophila melanogaster, chromosome 2L, r... 40 8.0
33dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
34emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4,... 40 8.0
35emb|BX828808.1|CNS0A3J9 Arabidopsis thaliana Full-length cDNA Co... 40 8.0
36dbj|AB112320.1| Human norovirus Saitama gene for RNA dependent R... 40 8.0
37dbj|AB112319.1| Human norovirus Saitama gene for RNA dependent R... 40 8.0
38dbj|AB112276.1| Human norovirus Saitama gene for RNA dependent R... 40 8.0
39dbj|AB112275.1| Human norovirus Saitama gene for RNA dependent R... 40 8.0
40dbj|AB112155.1| Human norovirus Saitama gene for capsid protein,... 40 8.0
41dbj|AB112147.1| Human norovirus Saitama gene for capsid protein,... 40 8.0
42gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, comp... 40 8.0
43gb|AC153369.4| Mus musculus 10 BAC RP23-103E4 (Roswell Park Canc... 40 8.0
44gb|AF079837.1|AF079837 Drosophila melanogaster TRAF1 (Traf1) mRN... 40 8.0
45gb|AE003576.5| Drosophila melanogaster chromosome 2L, section 15... 40 8.0
46gb|AC107773.9| Mus musculus chromosome 18, clone RP23-102H15, co... 40 8.0
47gb|AC004373.1|AC004373 Drosophila melanogaster DNA sequence (P1 ... 40 8.0
48gb|AC005270.1|AC005270 Drosophila melanogaster DNA sequence (P1s... 40 8.0
49gb|AC149064.3| Mus musculus BAC clone RP23-140I7 from 18, comple... 40 8.0
50gb|AC151474.2| Mus musculus BAC clone RP23-338P12 from 5, comple... 40 8.0 
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11,
             complete sequence
          Length = 102567

 Score =  377 bits (190), Expect = e-101
 Identities = 431/510 (84%), Gaps = 6/510 (1%)
 Strand = Plus / Plus

                                                                         
Query: 10    cttgccccgtgtcagtcaaggccatggtggtcaaagccatcctttcttatggatcaacag 69
             |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 87361 cttgccccatgtcaatcaaggccatggtggtcaaagccatcattccttatggatcatcag 87420

                                                                         
Query: 70    cttcatcctgtgccatcaactgtgacaaattctgtggtcagtaggataaaaaacaatggt 129
             |||||||| |  || |||||||| || |||||||| ||||||||||||||||||| |  |
Sbjct: 87421 cttcatccagctccttcaactgtaactaattctgtagtcagtaggataaaaaacagttct 87480

                                                                         
Query: 130   tctagttggctaaatgcggtcagcaacgtggctgcttctgcaagtggaaaactatccgtg 189
             ||| ||||||||||| | || || || |||||||||||||||||||| |||||||| || 
Sbjct: 87481 tctggttggctaaatactgttagtaatgtggctgcttctgcaagtgggaaactatctgta 87540

                                                                         
Query: 190   ccatctggtgctatcactgctattttttacaattccatttacaaaggttctctgccggct 249
             |||||||| ||| | |||||| ||||  |||||||||  ||  |||||||  |||| | |
Sbjct: 87541 ccatctggcgctgttactgctgttttccacaattccaactatgaaggttcattgccagtt 87600

                                                                         
Query: 250   ccgtcgaaggctaatgctttggagcatttattggtgtattcaccatctggtcatgttatt 309
             || || |||||||||||  |||||||| |||||||||||||||||||||| |||||||||
Sbjct: 87601 ccatcaaaggctaatgccatggagcatctattggtgtattcaccatctggccatgttatt 87660

                                                                         
Query: 310   caacatgaacttctgccttcttcgggttctgaatcctctgataacagcccaacagttggg 369
             ||||||||||| ||||   |||| ||||||||||||||||||| ||| |||| |||||||
Sbjct: 87661 caacatgaactactgc---cttcaggttctgaatcctctgatagcagtccaatagttggg 87717

                                                                         
Query: 370   tctggtagccatttgcagctccaagatgatgagttgcatgttaccgctgagccagttcag 429
              |||||  |   |||||| ||||||||||||||||||||||||| ||||| ||   ||||
Sbjct: 87718 cctggttcc---ttgcagatccaagatgatgagttgcatgttactgctgaaccgactcag 87774

                                                                         
Query: 430   tggtgggatgtttgccggaggacaaactggcctgaaagagaccaggacattgcaaatgtt 489
             ||||||||||| ||||| |||||||||||||| ||||| ||| |  ||||||||||  | 
Sbjct: 87775 tggtgggatgtatgccgtaggacaaactggccagaaagggacgaaaacattgcaaacata 87834

                                           
Query: 490   gtattccacaaccaactaaacagtatgatg 519
             || ||||| || |||| ||| |||||||||
Sbjct: 87835 gtcttccataatcaacgaaatagtatgatg 87864
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  377 bits (190), Expect = e-101
 Identities = 431/510 (84%), Gaps = 6/510 (1%)
 Strand = Plus / Plus

                                                                            
Query: 10       cttgccccgtgtcagtcaaggccatggtggtcaaagccatcctttcttatggatcaacag 69
                |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 19627462 cttgccccatgtcaatcaaggccatggtggtcaaagccatcattccttatggatcatcag 19627521

                                                                            
Query: 70       cttcatcctgtgccatcaactgtgacaaattctgtggtcagtaggataaaaaacaatggt 129
                |||||||| |  || |||||||| || |||||||| ||||||||||||||||||| |  |
Sbjct: 19627522 cttcatccagctccttcaactgtaactaattctgtagtcagtaggataaaaaacagttct 19627581

                                                                            
Query: 130      tctagttggctaaatgcggtcagcaacgtggctgcttctgcaagtggaaaactatccgtg 189
                ||| ||||||||||| | || || || |||||||||||||||||||| |||||||| || 
Sbjct: 19627582 tctggttggctaaatactgttagtaatgtggctgcttctgcaagtgggaaactatctgta 19627641

                                                                            
Query: 190      ccatctggtgctatcactgctattttttacaattccatttacaaaggttctctgccggct 249
                |||||||| ||| | |||||| ||||  |||||||||  ||  |||||||  |||| | |
Sbjct: 19627642 ccatctggcgctgttactgctgttttccacaattccaactatgaaggttcattgccagtt 19627701

                                                                            
Query: 250      ccgtcgaaggctaatgctttggagcatttattggtgtattcaccatctggtcatgttatt 309
                || || |||||||||||  |||||||| |||||||||||||||||||||| |||||||||
Sbjct: 19627702 ccatcaaaggctaatgccatggagcatctattggtgtattcaccatctggccatgttatt 19627761

                                                                            
Query: 310      caacatgaacttctgccttcttcgggttctgaatcctctgataacagcccaacagttggg 369
                ||||||||||| ||||   |||| ||||||||||||||||||| ||| |||| |||||||
Sbjct: 19627762 caacatgaactactgc---cttcaggttctgaatcctctgatagcagtccaatagttggg 19627818

                                                                            
Query: 370      tctggtagccatttgcagctccaagatgatgagttgcatgttaccgctgagccagttcag 429
                 |||||  |   |||||| ||||||||||||||||||||||||| ||||| ||   ||||
Sbjct: 19627819 cctggttcc---ttgcagatccaagatgatgagttgcatgttactgctgaaccgactcag 19627875

                                                                            
Query: 430      tggtgggatgtttgccggaggacaaactggcctgaaagagaccaggacattgcaaatgtt 489
                ||||||||||| ||||| |||||||||||||| ||||| ||| |  ||||||||||  | 
Sbjct: 19627876 tggtgggatgtatgccgtaggacaaactggccagaaagggacgaaaacattgcaaacata 19627935

                                              
Query: 490      gtattccacaaccaactaaacagtatgatg 519
                || ||||| || |||| ||| |||||||||
Sbjct: 19627936 gtcttccataatcaacgaaatagtatgatg 19627965
to top
>dbj|AK099795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097F10, full
           insert sequence
          Length = 2538

 Score =  377 bits (190), Expect = e-101
 Identities = 431/510 (84%), Gaps = 6/510 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  cttgccccgtgtcagtcaaggccatggtggtcaaagccatcctttcttatggatcaacag 69
           |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 447 cttgccccatgtcaatcaaggccatggtggtcaaagccatcattccttatggatcatcag 506

                                                                       
Query: 70  cttcatcctgtgccatcaactgtgacaaattctgtggtcagtaggataaaaaacaatggt 129
           |||||||| |  || |||||||| || |||||||| ||||||||||||||||||| |  |
Sbjct: 507 cttcatccagctccttcaactgtaactaattctgtagtcagtaggataaaaaacagttct 566

                                                                       
Query: 130 tctagttggctaaatgcggtcagcaacgtggctgcttctgcaagtggaaaactatccgtg 189
           ||| ||||||||||| | || || || |||||||||||||||||||| |||||||| || 
Sbjct: 567 tctggttggctaaatactgttagtaatgtggctgcttctgcaagtgggaaactatctgta 626

                                                                       
Query: 190 ccatctggtgctatcactgctattttttacaattccatttacaaaggttctctgccggct 249
           |||||||| ||| | |||||| ||||  |||||||||  ||  |||||||  |||| | |
Sbjct: 627 ccatctggcgctgttactgctgttttccacaattccaactatgaaggttcattgccagtt 686

                                                                       
Query: 250 ccgtcgaaggctaatgctttggagcatttattggtgtattcaccatctggtcatgttatt 309
           || || |||||||||||  |||||||| |||||||||||||||||||||| |||||||||
Sbjct: 687 ccatcaaaggctaatgccatggagcatctattggtgtattcaccatctggccatgttatt 746

                                                                       
Query: 310 caacatgaacttctgccttcttcgggttctgaatcctctgataacagcccaacagttggg 369
           ||||||||||| ||||   |||| ||||||||||||||||||| ||| |||| |||||||
Sbjct: 747 caacatgaactactgc---cttcaggttctgaatcctctgatagcagtccaatagttggg 803

                                                                       
Query: 370 tctggtagccatttgcagctccaagatgatgagttgcatgttaccgctgagccagttcag 429
            |||||  |   |||||| ||||||||||||||||||||||||| ||||| ||   ||||
Sbjct: 804 cctggttcc---ttgcagatccaagatgatgagttgcatgttactgctgaaccgactcag 860

                                                                       
Query: 430 tggtgggatgtttgccggaggacaaactggcctgaaagagaccaggacattgcaaatgtt 489
           ||||||||||| ||||| |||||||||||||| ||||| ||| |  ||||||||||  | 
Sbjct: 861 tggtgggatgtatgccgtaggacaaactggccagaaagggacgaaaacattgcaaacata 920

                                         
Query: 490 gtattccacaaccaactaaacagtatgatg 519
           || ||||| || |||| ||| |||||||||
Sbjct: 921 gtcttccataatcaacgaaatagtatgatg 950
to top
>dbj|AK072244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003F07, full
            insert sequence
          Length = 3941

 Score =  377 bits (190), Expect = e-101
 Identities = 431/510 (84%), Gaps = 6/510 (1%)
 Strand = Plus / Plus

                                                                        
Query: 10   cttgccccgtgtcagtcaaggccatggtggtcaaagccatcctttcttatggatcaacag 69
            |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 1823 cttgccccatgtcaatcaaggccatggtggtcaaagccatcattccttatggatcatcag 1882

                                                                        
Query: 70   cttcatcctgtgccatcaactgtgacaaattctgtggtcagtaggataaaaaacaatggt 129
            |||||||| |  || |||||||| || |||||||| ||||||||||||||||||| |  |
Sbjct: 1883 cttcatccagctccttcaactgtaactaattctgtagtcagtaggataaaaaacagttct 1942

                                                                        
Query: 130  tctagttggctaaatgcggtcagcaacgtggctgcttctgcaagtggaaaactatccgtg 189
            ||| ||||||||||| | || || || |||||||||||||||||||| |||||||| || 
Sbjct: 1943 tctggttggctaaatactgttagtaatgtggctgcttctgcaagtgggaaactatctgta 2002

                                                                        
Query: 190  ccatctggtgctatcactgctattttttacaattccatttacaaaggttctctgccggct 249
            |||||||| ||| | |||||| ||||  |||||||||  ||  |||||||  |||| | |
Sbjct: 2003 ccatctggcgctgttactgctgttttccacaattccaactatgaaggttcattgccagtt 2062

                                                                        
Query: 250  ccgtcgaaggctaatgctttggagcatttattggtgtattcaccatctggtcatgttatt 309
            || || |||||||||||  |||||||| |||||||||||||||||||||| |||||||||
Sbjct: 2063 ccatcaaaggctaatgccatggagcatctattggtgtattcaccatctggccatgttatt 2122

                                                                        
Query: 310  caacatgaacttctgccttcttcgggttctgaatcctctgataacagcccaacagttggg 369
            ||||||||||| ||||   |||| ||||||||||||||||||| ||| |||| |||||||
Sbjct: 2123 caacatgaactactgc---cttcaggttctgaatcctctgatagcagtccaatagttggg 2179

                                                                        
Query: 370  tctggtagccatttgcagctccaagatgatgagttgcatgttaccgctgagccagttcag 429
             |||||  |   |||||| ||||||||||||||||||||||||| ||||| ||   ||||
Sbjct: 2180 cctggttcc---ttgcagatccaagatgatgagttgcatgttactgctgaaccgactcag 2236

                                                                        
Query: 430  tggtgggatgtttgccggaggacaaactggcctgaaagagaccaggacattgcaaatgtt 489
            ||||||||||| ||||| |||||||||||||| ||||| ||| |  ||||||||||  | 
Sbjct: 2237 tggtgggatgtatgccgtaggacaaactggccagaaagggacgaaaacattgcaaacata 2296

                                          
Query: 490  gtattccacaaccaactaaacagtatgatg 519
            || ||||| || |||| ||| |||||||||
Sbjct: 2297 gtcttccataatcaacgaaatagtatgatg 2326
to top
>gb|AC154815.2| Mus musculus BAC clone RP24-534C22 from chromosome 9, complete sequence
          Length = 173315

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 502   caactaaacagtatgatgacac 523
             ||||||||||||||||||||||
Sbjct: 90798 caactaaacagtatgatgacac 90777
to top
>gb|AF121782.1| Homo sapiens chromosome 21q22.3 PAC 206A10, complete sequence
          Length = 142742

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 503   aactaaacagtatgatgacacc 524
             ||||||||||||||||||||||
Sbjct: 60396 aactaaacagtatgatgacacc 60375
to top
>emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 503    aactaaacagtatgatgacacc 524
              ||||||||||||||||||||||
Sbjct: 284576 aactaaacagtatgatgacacc 284555
to top
>emb|BX322646.10| Zebrafish DNA sequence from clone DKEYP-11A1 in linkage group 14,
             complete sequence
          Length = 145265

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 158   tggctgcttctgcaagtggaaa 179
             ||||||||||||||||||||||
Sbjct: 26470 tggctgcttctgcaagtggaaa 26491
to top
>emb|BX470241.5| Zebrafish DNA sequence from clone CH211-240J13 in linkage group 14,
              complete sequence
          Length = 163257

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 158    tggctgcttctgcaagtggaaa 179
              ||||||||||||||||||||||
Sbjct: 150841 tggctgcttctgcaagtggaaa 150820
to top
>gb|AC154319.2| Mus musculus BAC clone RP23-331I13 from chromosome 9, complete sequence
          Length = 196331

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 502   caactaaacagtatgatgacac 523
             ||||||||||||||||||||||
Sbjct: 31960 caactaaacagtatgatgacac 31939
to top
>dbj|BS000162.1| Pan troglodytes chromosome 22 clone:PTB-060F12, map 22, complete
             sequences
          Length = 156288

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 503   aactaaacagtatgatgacacc 524
             ||||||||||||||||||||||
Sbjct: 10692 aactaaacagtatgatgacacc 10671
to top
>emb|AL954228.1|CH179K04 Pan troglodytes chromosome 22 BAC CH251-179K04, complete sequence
          Length = 182532

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 503   aactaaacagtatgatgacacc 524
             ||||||||||||||||||||||
Sbjct: 28595 aactaaacagtatgatgacacc 28574
to top
>gb|AC133194.3| Mus musculus BAC clone RP23-403H14 from 3, complete sequence
          Length = 205323

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 90    tgtgacaaattctgtggtcagt 111
             ||||||||||||||||||||||
Sbjct: 32669 tgtgacaaattctgtggtcagt 32648
to top
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
          Length = 143392

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    tcctgtgccatcaactgtgac 95
             |||||||||||||||||||||
Sbjct: 91621 tcctgtgccatcaactgtgac 91641
to top
>emb|AL133341.12| Human DNA sequence from clone RP3-342O24 on chromosome 20 Contains ESTs
             and GSSs, complete sequence
          Length = 35033

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 447   gaggacaaactggcctgaaagagaccagg 475
             |||||||||||||||||| |||| |||||
Sbjct: 21309 gaggacaaactggcctgagagaggccagg 21281
to top
>gb|AY613855.1| Oikopleura dioica clone BACOIKO007 10xi11, complete sequence
          Length = 104968

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 559  gatttcactccatcaaatgat 579
            |||||||||||||||||||||
Sbjct: 2318 gatttcactccatcaaatgat 2338
to top
>emb|BX004889.8| Zebrafish DNA sequence from clone DKEY-65P15 in linkage group 25,
              complete sequence
          Length = 253422

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 157    gtggctgcttctgcaagtggaaaac 181
              |||||||||||| ||||||||||||
Sbjct: 244099 gtggctgcttcttcaagtggaaaac 244123
to top
>ref|NM_117770.3| Arabidopsis thaliana catalytic AT4G16690 mRNA, complete cds
          Length = 1092

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 541 gaggatagtgaccattctgatttc 564
           ||||||||||||||||||| ||||
Sbjct: 748 gaggatagtgaccattctgctttc 771
to top
>gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, complete sequence
          Length = 221261

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tttcttatggatcaacagct 71
              ||||||||||||||||||||
Sbjct: 147752 tttcttatggatcaacagct 147733
to top
>gb|AC107763.25| Mus musculus chromosome 5, clone RP23-180F3, complete sequence
          Length = 219488

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    tcagtggtgggatgtttgcc 445
              ||||||||||||||||||||
Sbjct: 216369 tcagtggtgggatgtttgcc 216388
to top
>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence
          Length = 182677

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 260    ctaatgctttggagcatttattggtgtattca 291
              |||||| ||| ||||||||||| |||||||||
Sbjct: 156008 ctaatgattttgagcatttatttgtgtattca 155977
to top
>ref|XM_646201.1| Entamoeba histolytica HM-1:IMSS glycosyltransferase (172.t00007)
           partial mRNA
          Length = 1143

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 560 atttcactccatcaaatgatggtgtatc 587
           |||||| |||||||||||||||| ||||
Sbjct: 71  atttcattccatcaaatgatggtttatc 98
to top
>emb|AL357150.7| Human DNA sequence from clone RP11-122C9 on chromosome 1p21.2-22.1
             Contains a ribosomal protein L7 (RPL7) pseudogene, the
             PTBP2 gene for polypyrimidine tract binding protein 2 and
             a CpG island, complete sequence
          Length = 187378

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   ggacattgcaaatgttgtat 493
             ||||||||||||||||||||
Sbjct: 70047 ggacattgcaaatgttgtat 70066
to top
>emb|AL158812.10| Human DNA sequence from clone RP11-157E11 on chromosome 13, complete
             sequence
          Length = 173538

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   ggacaaactggcctgaaaga 468
             ||||||||||||||||||||
Sbjct: 98917 ggacaaactggcctgaaaga 98898
to top
>emb|AL031390.4|HS197L1 Human DNA sequence from clone RP1-197L1 on chromosome 6q24.1-25.2
            Contains a pseudogene similar to a hypothetical mouse
            protein, the gene for hypothetical protein MGC3133 and
            part of the PLAGL1 gene for pleiomorphic adenoma
            gene-like 1 (PLAG-like 1, LOT1, ZAC, ZAC tumor
            suppressor). Contains two CpG islands, complete sequence
          Length = 101846

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 528  cacttctgactgtgaggata 547
            ||||||||||||||||||||
Sbjct: 8395 cacttctgactgtgaggata 8376
to top
>emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6
          Length = 213788

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 541    gaggatagtgaccattctgatttc 564
              ||||||||||||||||||| ||||
Sbjct: 156992 gaggatagtgaccattctgctttc 156969
to top
>emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44
          Length = 198735

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 541    gaggatagtgaccattctgatttc 564
              ||||||||||||||||||| ||||
Sbjct: 134920 gaggatagtgaccattctgctttc 134897
to top
>emb|CR377201.10| Zebrafish DNA sequence from clone CH211-210H21 in linkage group 1,
             complete sequence
          Length = 140461

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ttttttacaattccatttac 231
             ||||||||||||||||||||
Sbjct: 69163 ttttttacaattccatttac 69182
to top
>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1,
             complete sequence
          Length = 214471

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ttttttacaattccatttac 231
             ||||||||||||||||||||
Sbjct: 61533 ttttttacaattccatttac 61552
to top
>ref|NM_058069.3| Drosophila melanogaster TNF-receptor-associated factor 1 CG3048-RB,
           transcript variant B (Traf1), mRNA
          Length = 2186

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 211 attttttacaattccatttacaaa 234
           |||||||||| |||||||||||||
Sbjct: 274 attttttacatttccatttacaaa 297
to top
>gb|AC097521.2| Homo sapiens BAC clone RP11-565A3 from 4, complete sequence
          Length = 184729

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    atttgcagctccaagatgat 399
              ||||||||||||||||||||
Sbjct: 166974 atttgcagctccaagatgat 166993
to top
>gb|AC092232.1|AC092232 Drosophila melanogaster, chromosome 2L, region 24E-24F, BAC clone
              BACR28K16, complete sequence
          Length = 182897

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 211    attttttacaattccatttacaaa 234
              |||||||||| |||||||||||||
Sbjct: 150106 attttttacatttccatttacaaa 150083
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 476      acattgcaaatgttgtattc 495
                ||||||||||||||||||||
Sbjct: 18759035 acattgcaaatgttgtattc 18759016
to top
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    acattgcaaatgttgtattc 495
              ||||||||||||||||||||
Sbjct: 108198 acattgcaaatgttgtattc 108179
to top
>emb|BX828808.1|CNS0A3J9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL40ZD05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1033

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 541 gaggatagtgaccattctgatttc 564
           ||||||||||||||||||| ||||
Sbjct: 689 gaggatagtgaccattctgctttc 712
to top
>dbj|AB112320.1| Human norovirus Saitama gene for RNA dependent RNA polymerase,
           capsid protein, partial cds, strain: NV/Saitama
           T60GIIb/02/JP
          Length = 938

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 cactccatcaaatgatggtg 583
           ||||||||||||||||||||
Sbjct: 679 cactccatcaaatgatggtg 698
to top
>dbj|AB112319.1| Human norovirus Saitama gene for RNA dependent RNA polymerase,
           capsid protein, partial cds, strain: NV/Saitama
           T60GIIa/02/JP
          Length = 938

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 cactccatcaaatgatggtg 583
           ||||||||||||||||||||
Sbjct: 679 cactccatcaaatgatggtg 698
to top
>dbj|AB112276.1| Human norovirus Saitama gene for RNA dependent RNA polymerase,
           capsid protein, partial cds, strain: NV/Saitama
           T61GII/02/JP
          Length = 425

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 cactccatcaaatgatggtg 583
           ||||||||||||||||||||
Sbjct: 167 cactccatcaaatgatggtg 186
to top
>dbj|AB112275.1| Human norovirus Saitama gene for RNA dependent RNA polymerase,
           capsid protein, partial cds, strain: NV/Saitama
           T59aGII/02/JP
          Length = 425

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 cactccatcaaatgatggtg 583
           ||||||||||||||||||||
Sbjct: 167 cactccatcaaatgatggtg 186
to top
>dbj|AB112155.1| Human norovirus Saitama gene for capsid protein, partial cds,
           strain: NV/Saitama T86GII/02/JP
          Length = 282

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 cactccatcaaatgatggtg 583
           ||||||||||||||||||||
Sbjct: 24  cactccatcaaatgatggtg 43
to top
>dbj|AB112147.1| Human norovirus Saitama gene for capsid protein, partial cds,
           strain: NV/Saitama T64cGII/02/JP
          Length = 282

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 cactccatcaaatgatggtg 583
           ||||||||||||||||||||
Sbjct: 24  cactccatcaaatgatggtg 43
to top
>gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, complete sequence
          Length = 200945

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  tcagtggtgggatgtttgcc 445
            ||||||||||||||||||||
Sbjct: 7623 tcagtggtgggatgtttgcc 7642
to top
>gb|AC153369.4| Mus musculus 10 BAC RP23-103E4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 197003

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 207    tgctattttttacaattccattta 230
              ||||||||| ||||||||||||||
Sbjct: 104680 tgctattttctacaattccattta 104657
to top
>gb|AF079837.1|AF079837 Drosophila melanogaster TRAF1 (Traf1) mRNA, complete cds
          Length = 2000

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 211 attttttacaattccatttacaaa 234
           |||||||||| |||||||||||||
Sbjct: 274 attttttacatttccatttacaaa 297
to top
>gb|AE003576.5| Drosophila melanogaster chromosome 2L, section 15 of 83 of the complete
             sequence
          Length = 289893

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 211   attttttacaattccatttacaaa 234
             |||||||||| |||||||||||||
Sbjct: 57561 attttttacatttccatttacaaa 57584
to top
>gb|AC107773.9| Mus musculus chromosome 18, clone RP23-102H15, complete sequence
          Length = 250096

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   caaatgttgtattccacaac 501
             ||||||||||||||||||||
Sbjct: 28635 caaatgttgtattccacaac 28654
to top
>gb|AC004373.1|AC004373 Drosophila melanogaster DNA sequence (P1 DS05273 (D80)), complete
            sequence
          Length = 72722

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 211  attttttacaattccatttacaaa 234
            |||||||||| |||||||||||||
Sbjct: 3773 attttttacatttccatttacaaa 3796
to top
>gb|AC005270.1|AC005270 Drosophila melanogaster DNA sequence (P1s DS00830 (D77) and DS04830
              (D98)), complete sequence
          Length = 132666

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    attttttacaattccatttacaaa 234
              |||||||||| |||||||||||||
Sbjct: 120928 attttttacatttccatttacaaa 120951
to top
>gb|AC149064.3| Mus musculus BAC clone RP23-140I7 from 18, complete sequence
          Length = 183953

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 482    caaatgttgtattccacaac 501
              ||||||||||||||||||||
Sbjct: 117474 caaatgttgtattccacaac 117493
to top
>gb|AC151474.2| Mus musculus BAC clone RP23-338P12 from 5, complete sequence
          Length = 226403

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  tcagtggtgggatgtttgcc 445
            ||||||||||||||||||||
Sbjct: 7174 tcagtggtgggatgtttgcc 7193


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,620,102
Number of Sequences: 3902068
Number of extensions: 5620102
Number of successful extensions: 113937
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113766
Number of HSP's gapped (non-prelim): 167
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top