ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AVRC_PSESG (P13836) Avirulence C protein 33 0.57
2SYFA_CLOAB (Q97GK9) Phenylalanyl-tRNA synthetase alpha chain (EC... 30 2.8
3VGLB_GPCMV (Q69024) Glycoprotein B precursor 29 6.3
4SYFA_CLOTE (Q891T7) Phenylalanyl-tRNA synthetase alpha chain (EC... 29 6.3
5SRD46_CAEEL (Q19508) Serpentine receptor class delta-46 (Protein... 29 8.2
6ALG12_DROME (Q9VH78) Probable dolichyl-P-Man:Man(7)GlcNAc(2)-PP-... 29 8.2

>AVRC_PSESG (P13836) Avirulence C protein|
          Length = 352

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 373 DDRTGENIRRKPN*DENKLTCEYIY*NYRLLGQVVAFGFQMNF 501
           DD  G NI  K N  ENK  CE +Y   R+ G  +A G   +F
Sbjct: 78  DDAPGLNISNKSNTQENKRYCESLYQAARIAGGSIASGRVTSF 120



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>SYFA_CLOAB (Q97GK9) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 339

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 204 NDTLSILLNLMFLAISCQSVA*DTLNFQMQNVPENH---SEQDDFKFSD 341
           N   +I  ++ F+      V  D  NF+M N+P+NH    EQD F  +D
Sbjct: 115 NKVENIFRDMGFVIEEGPEVEYDKYNFEMLNIPKNHPARGEQDTFYIND 163



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>VGLB_GPCMV (Q69024) Glycoprotein B precursor|
          Length = 901

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 144 RPKKGITHSGIISTFWGGKKNDTLSILLNLMFLAISCQSVA*DTLNFQMQNVPE-NHSE 317
           RP +GI  S I+S  W G    T +  L +++L + C+S        +   V   NHS+
Sbjct: 2   RPVRGIARSRILSCSWRG----TWTSALTILYLGVYCESTTVTPTTVEDTTVSNGNHSD 56



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>SYFA_CLOTE (Q891T7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 339

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 219 ILLNLMFLAISCQSVA*DTLNFQMQNVPENH---SEQDDFKFSD 341
           I +N+ F       +  D  NF+  N+P+NH    EQD F  +D
Sbjct: 120 IFINMGFTVEEGPEIELDYYNFEALNIPKNHPARGEQDTFYIND 163



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>SRD46_CAEEL (Q19508) Serpentine receptor class delta-46 (Protein srd-46)|
          Length = 317

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 447 IYIFTSQF--VFILIWFPPDVFSGPVVLFAVIFWNILHLKI*SRLVRCD 307
           ++IF S F  +F LI FP  +    ++L+ +IF +  HLK   R+  C+
Sbjct: 2   LHIFLSYFYIIFFLIVFPTQL----LLLYVIIFHSPKHLKTLKRIFLCN 46



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>ALG12_DROME (Q9VH78) Probable|
           dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,
           6-mannosyltransferase (EC 2.4.1.-) (Mannosyltransferase
           ALG12 homolog)
          Length = 678

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 450 SIYIFTSQFVFILIWFPPDVFSGPVVLFAVIFW 352
           +I I    F+F +    P++F+ P+VLFA+ +W
Sbjct: 120 AITITQFHFMFYMTRPLPNIFALPIVLFAIAYW 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,028,149
Number of Sequences: 219361
Number of extensions: 1385737
Number of successful extensions: 3100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3098
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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