ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9j03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191424.1| Oryza sativa (japonica cultivar-group), predic... 141 3e-30
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
3dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
4dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
5gb|AY104649.1| Zea mays PCO133877 mRNA sequence 62 2e-06
6gb|AY104905.1| Zea mays PCO064124 mRNA sequence 62 2e-06
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
8gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubi... 60 9e-06
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 60 9e-06
10emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 60 9e-06
11dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
12ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidas... 52 0.002
13gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence 52 0.002
14gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiqu... 52 0.002
15emb|AL590453.10| Human DNA sequence from clone RP11-294K17 on ch... 48 0.035
16gb|AC087243.7| Homo sapiens 12p BAC RP11-549J13 (Roswell Park Ca... 48 0.035
17gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.035
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.035
19gb|AC026310.24|AC026310 Homo sapiens 12 BAC RP11-662I13 (Roswell... 48 0.035
20gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.035
21ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
22gb|AY524977.1| Synodus variegatus mitochondrion, complete genome 46 0.14
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
24dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
25ref|XM_534972.2| PREDICTED: Canis familiaris similar to CG1234-P... 44 0.55
26emb|AL356390.24| Human DNA sequence from clone RP11-344H11 on ch... 44 0.55
27gb|AC004873.3| Homo sapiens PAC clone RP4-742P4 from 1, complete... 44 0.55
28gb|AC068724.7|AC068724 Homo sapiens chromosome 15 clone RP11-473... 44 0.55
29gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.5... 44 0.55
30ref|XM_507934.1| PREDICTED: Pan troglodytes similar to chromosom... 42 2.2
31ref|NM_022451.9| Homo sapiens nucleolar complex associated 3 hom... 42 2.2
32gb|BC049850.1| Homo sapiens nucleolar complex associated 3 homol... 42 2.2
33gb|BC030999.1| Homo sapiens nucleolar complex associated 3 homol... 42 2.2
34emb|AL627107.32| Human DNA sequence from clone XXyac-R12DG2 on c... 42 2.2
35emb|AL606514.3| Human DNA sequence from clone RP11-38J6 on chrom... 42 2.2
36emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on ch... 42 2.2
37emb|BX571690.6| Zebrafish DNA sequence from clone CH211-149N12 i... 42 2.2
38dbj|AK091246.1| Homo sapiens cDNA FLJ33927 fis, clone CTONG2017429 42 2.2
39dbj|AK022882.1| Homo sapiens cDNA FLJ12820 fis, clone NT2RP2002736 42 2.2
40gb|AC006055.1| Homo sapiens 3p22 Contig 7 PAC RPCI4-672N11 (Rosw... 42 2.2
41dbj|AB077992.1| Homo sapiens mRNA for AD24, complete cds 42 2.2
42dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.2
43dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 2.2
44ref|NM_120743.2| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC ... 40 8.6
45ref|NM_180452.1| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC ... 40 8.6
46gb|AF467260.1| Ostrinia furnacalis mitochondrion, complete genome 40 8.6
47gb|AY546093.1| Taxus cuspidata taxadiene synthase-like gene, par... 40 8.6
48gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, comp... 40 8.6
49gb|AY364469.1| Taxus canadensis clone Tc3003 taxa-4(5),11(12)-di... 40 8.6
50gb|DQ353394.1| Liometopum luctuosum voucher CS0214 cytochrome ox... 40 8.6
51gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 8.6
52emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, co... 40 8.6
53gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosom... 40 8.6
54gb|AC092920.7| Homo sapiens 3 BAC RP11-255G21 (Roswell Park Canc... 40 8.6
55gb|AC126264.3| Mus musculus BAC clone RP23-376F13 from chromosom... 40 8.6
56gb|AY424738.1| Taxus baccata taxadiene synthase (TXS) mRNA, comp... 40 8.6
57ref|XM_721647.1| Plasmodium yoelii yoelii str. 17XNL helicase (P... 40 8.6
58gb|BC059042.1| Mus musculus cDNA clone IMAGE:6815954, partial cds 40 8.6
59gb|AC111137.10| Mus musculus chromosome 5, clone RP23-357C4, com... 40 8.6
60gb|AY931015.1| Taxus wallichiana var. mairei taxadiene synthase ... 40 8.6
61emb|AL158153.10| Human DNA sequence from clone RP11-373A9 on chr... 40 8.6
62emb|AL137182.9| Human DNA sequence from clone RP1-257A15 on chro... 40 8.6
63emb|AL035531.17|HS483L3 Human DNA sequence from clone RP3-483L3 ... 40 8.6
64emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23... 40 8.6
65gb|AY142616.1| Arabidopsis thaliana putative ubiquitin-specific ... 40 8.6
66gb|AF360198.1| Arabidopsis thaliana putative ubiquitin-specific ... 40 8.6
67emb|AJ320538.1|TBA320538 Taxus baccata tasy gene for taxadiene s... 40 8.6
68gb|AF444065.1| Coccotrypes litoralis cytochrome oxidase subunit ... 40 8.6
69gb|AF444058.1| Coccotrypes cyperi cytochrome oxidase subunit I (... 40 8.6
70gb|AC093502.2| Drosophila melanogaster 3L BAC RP98-48C4 (Roswell... 40 8.6
71gb|AC104703.3| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell... 40 8.6
72gb|AY007207.1| Taxus chinensis taxadiene synthase mRNA, complete... 40 8.6
73gb|AC106899.5| Homo sapiens BAC clone RP11-734N2 from 2, complet... 40 8.6
74ref|NM_168571.2| Drosophila melanogaster CG32133-RA (CG32133), mRNA 40 8.6
75dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 40 8.6
76gb|AF187135.1| Xylosandrus cf. zimmermanni SCY05 cytochrome oxid... 40 8.6
77gb|AF375309.1| Coccotrypes cyperi cytochrome oxidase I (CO1) gen... 40 8.6
78gb|AC087367.3| Homo sapiens chromosome 8, clone RP11-680O8, comp... 40 8.6
79gb|AC026991.9| Homo sapiens, clone RP11-279L11, complete sequence 40 8.6
80gb|AF326519.1|AF326519 Taxus brevifolia taxadiene synthase gene,... 40 8.6
81gb|AF195750.1|AF195750 Plathemis lydia cytochrome oxidase I (COI... 40 8.6
82gb|AF302663.1|AF302663 Arabidopsis thaliana ubiquitin-specific p... 40 8.6
83gb|AY365032.2| Taxus chinensis var. mairei taxadiene synthase mR... 40 8.6
84emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-6... 40 8.6
85gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49... 40 8.6
86gb|AC111107.18| Mus musculus chromosome 5, clone RP23-195P3, com... 40 8.6
87gb|BC084278.1| Xenopus laevis hypothetical LOC495105, mRNA (cDNA... 40 8.6
88gb|U48796.1|TBU48796 Taxus brevifolia taxadiene synthase (TDC1) ... 40 8.6
89gb|AY461450.1| Taxus x media taxadiene synthase (txs) mRNA, comp... 40 8.6
90gb|DQ305407.1| Taxus cuspidata taxadiene synthase (tasy) gene, c... 40 8.6
91gb|AC130474.12| Mus musculus chromosome 7, clone RP23-178C20, co... 40 8.6
92gb|AC122767.16| Mus musculus chromosome 7, clone RP24-143L4, com... 40 8.6
93emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chr... 40 8.6
94dbj|AP002936.1| Danacetichthys galathenus mitochondrial DNA, com... 40 8.6 
>ref|NM_191424.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3327

 Score =  141 bits (71), Expect = 3e-30
 Identities = 230/283 (81%)
 Strand = Plus / Plus

                                                                        
Query: 76   aagacaaaggatgatattttacttttcttcaagctctatgaccctgaaaaagaagaacta 135
            |||||||||||||| || ||| | ||||||||||| ||||| |||||||| ||||| |||
Sbjct: 2041 aagacaaaggatgacatattaatattcttcaagctgtatgatcctgaaaaggaagagcta 2100

                                                                        
Query: 136  agatatgttggaagtcttttcttgaaagcctcatataaggcatctgatatagtgccaaaa 195
            |||||||||||||  ||| |  ||||||| |||   ||| || |||||||||||| ||||
Sbjct: 2101 agatatgttggaaaacttcttgtgaaagcatcagggaagccagctgatatagtgcaaaaa 2160

                                                                        
Query: 196  ttgaatgagatagcaggatttcagcctgatgaagatattgagttgtatgaggaaataaaa 255
            ||| | ||||| ||||| |||||| | ||||||||||||||  ||||||||||| |||  
Sbjct: 2161 ttgcaagagatggcagggtttcagtcagatgaagatattgaactgtatgaggaagtaatg 2220

                                                                        
Query: 256  tttgagccaaatattatgtgcgaacaaattgactatgatgtttccttcagtttgaaccag 315
            || ||||||| | | ||||| ||||  ||| ||  | ||| |||||||  ||  | ||||
Sbjct: 2221 ttcgagccaagtgtaatgtgtgaacctattaacattaatgattccttcctttcaagccag 2280

                                                       
Query: 316  cttgtagatggagacatattgtgctaccaaaaacgttgttctc 358
            |||| |||||| |||||  | ||||||||||||||||||||||
Sbjct: 2281 cttgaagatggtgacattatatgctaccaaaaacgttgttctc 2323



 Score =  117 bits (59), Expect = 5e-23
 Identities = 191/235 (81%)
 Strand = Plus / Plus

                                                                        
Query: 397  tctttctttgaatatgtccataatagacaggttgtgcatttcagattgcttgataagcca 456
            ||||||||||||||| |||| |||||||||||||| || |||||||| ||||| || |||
Sbjct: 2362 tctttctttgaatatatccaaaatagacaggttgtccacttcagattacttgagaatcca 2421

                                                                        
Query: 457  aaacaagacgatttctccctagaactatcaaaacgttccacatacgatgatgttgttgag 516
            ||| | || || ||| |  | || || ||||| |||| ||| || |||||||||||||| 
Sbjct: 2422 aaagatgatgacttcactttggagctttcaaagcgtttcacgtatgatgatgttgttgaa 2481

                                                                        
Query: 517  aaagttgcacaacatcttggtatggatgatccttcaaaactccgccttacacagcacatc 576
            ||||||||  | || |||||  | ||||||||||| ||||||||||||||||| ||| ||
Sbjct: 2482 aaagttgctaatcaacttggactcgatgatccttccaaactccgccttacacaacacctc 2541

                                                                   
Query: 577  ccgcatttacagcaaccgaaacatcaatacatcaagtatagaagtattgatcatc 631
            ||| ||| ||||   || |||  ||| ||||| ||||||||| || |||||||||
Sbjct: 2542 ccgtattcacagatgcccaaatctcactacattaagtatagaggtcttgatcatc 2596
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 121/148 (81%)
 Strand = Plus / Minus

                                                                            
Query: 484      tcaaaacgttccacatacgatgatgttgttgagaaagttgcacaacatcttggtatggat 543
                ||||| |||| ||| || |||||||||||||| ||||||||  | || |||||  | |||
Sbjct: 32549764 tcaaagcgtttcacgtatgatgatgttgttgaaaaagttgctaatcaacttggactcgat 32549705

                                                                            
Query: 544      gatccttcaaaactccgccttacacagcacatcccgcatttacagcaaccgaaacatcaa 603
                |||||||| ||||||||||||||||| ||| ||||| ||| ||||   || |||  ||| 
Sbjct: 32549704 gatccttccaaactccgccttacacaacacctcccgtattcacagatgcccaaatctcac 32549645

                                            
Query: 604      tacatcaagtatagaagtattgatcatc 631
                ||||| ||||||||| || |||||||||
Sbjct: 32549644 tacattaagtatagaggtcttgatcatc 32549617



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 179      ctgatatagtgccaaaattgaatgagatagcaggatttcagcctgatgaagatattgagt 238
                |||||||||||| ||||||| | ||||| ||||| |||||| | ||||||||||||||  
Sbjct: 32552027 ctgatatagtgcaaaaattgcaagagatggcagggtttcagtcagatgaagatattgaac 32551968

                         
Query: 239      tgtatgagg 247
                |||||||||
Sbjct: 32551967 tgtatgagg 32551959



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                            
Query: 76       aagacaaaggatgatattttacttttcttcaagctctatgaccctgaaaaagaagaacta 135
                |||||||||||||| || ||| | ||||||||||| ||||| |||||||| ||||| |||
Sbjct: 32552237 aagacaaaggatgacatattaatattcttcaagctgtatgatcctgaaaaggaagagcta 32552178

                  
Query: 136      ag 137
                ||
Sbjct: 32552177 ag 32552176



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 314      agcttgtagatggagacatattgtgctaccaaaaacgttgttctc 358
                |||||| |||||| |||||  | ||||||||||||||||||||||
Sbjct: 32551690 agcttgaagatggtgacattatatgctaccaaaaacgttgttctc 32551646



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 397      tctttctttgaatatgtccataatagacaggt 428
                ||||||||||||||| |||| |||||||||||
Sbjct: 32551607 tctttctttgaatatatccaaaatagacaggt 32551576
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>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0695H10
          Length = 136883

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 121/148 (81%)
 Strand = Plus / Minus

                                                                         
Query: 484   tcaaaacgttccacatacgatgatgttgttgagaaagttgcacaacatcttggtatggat 543
             ||||| |||| ||| || |||||||||||||| ||||||||  | || |||||  | |||
Sbjct: 12559 tcaaagcgtttcacgtatgatgatgttgttgaaaaagttgctaatcaacttggactcgat 12500

                                                                         
Query: 544   gatccttcaaaactccgccttacacagcacatcccgcatttacagcaaccgaaacatcaa 603
             |||||||| ||||||||||||||||| ||| ||||| ||| ||||   || |||  ||| 
Sbjct: 12499 gatccttccaaactccgccttacacaacacctcccgtattcacagatgcccaaatctcac 12440

                                         
Query: 604   tacatcaagtatagaagtattgatcatc 631
             ||||| ||||||||| || |||||||||
Sbjct: 12439 tacattaagtatagaggtcttgatcatc 12412



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                         
Query: 179   ctgatatagtgccaaaattgaatgagatagcaggatttcagcctgatgaagatattgagt 238
             |||||||||||| ||||||| | ||||| ||||| |||||| | ||||||||||||||  
Sbjct: 14822 ctgatatagtgcaaaaattgcaagagatggcagggtttcagtcagatgaagatattgaac 14763

                      
Query: 239   tgtatgagg 247
             |||||||||
Sbjct: 14762 tgtatgagg 14754



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 76    aagacaaaggatgatattttacttttcttcaagctctatgaccctgaaaaagaagaacta 135
             |||||||||||||| || ||| | ||||||||||| ||||| |||||||| ||||| |||
Sbjct: 15032 aagacaaaggatgacatattaatattcttcaagctgtatgatcctgaaaaggaagagcta 14973

               
Query: 136   ag 137
             ||
Sbjct: 14972 ag 14971



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 314   agcttgtagatggagacatattgtgctaccaaaaacgttgttctc 358
             |||||| |||||| |||||  | ||||||||||||||||||||||
Sbjct: 14485 agcttgaagatggtgacattatatgctaccaaaaacgttgttctc 14441



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 397   tctttctttgaatatgtccataatagacaggt 428
             ||||||||||||||| |||| |||||||||||
Sbjct: 14402 tctttctttgaatatatccaaaatagacaggt 14371
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0665A11
          Length = 166421

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 121/148 (81%)
 Strand = Plus / Minus

                                                                          
Query: 484    tcaaaacgttccacatacgatgatgttgttgagaaagttgcacaacatcttggtatggat 543
              ||||| |||| ||| || |||||||||||||| ||||||||  | || |||||  | |||
Sbjct: 137285 tcaaagcgtttcacgtatgatgatgttgttgaaaaagttgctaatcaacttggactcgat 137226

                                                                          
Query: 544    gatccttcaaaactccgccttacacagcacatcccgcatttacagcaaccgaaacatcaa 603
              |||||||| ||||||||||||||||| ||| ||||| ||| ||||   || |||  ||| 
Sbjct: 137225 gatccttccaaactccgccttacacaacacctcccgtattcacagatgcccaaatctcac 137166

                                          
Query: 604    tacatcaagtatagaagtattgatcatc 631
              ||||| ||||||||| || |||||||||
Sbjct: 137165 tacattaagtatagaggtcttgatcatc 137138



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                          
Query: 179    ctgatatagtgccaaaattgaatgagatagcaggatttcagcctgatgaagatattgagt 238
              |||||||||||| ||||||| | ||||| ||||| |||||| | ||||||||||||||  
Sbjct: 139548 ctgatatagtgcaaaaattgcaagagatggcagggtttcagtcagatgaagatattgaac 139489

                       
Query: 239    tgtatgagg 247
              |||||||||
Sbjct: 139488 tgtatgagg 139480



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                          
Query: 76     aagacaaaggatgatattttacttttcttcaagctctatgaccctgaaaaagaagaacta 135
              |||||||||||||| || ||| | ||||||||||| ||||| |||||||| ||||| |||
Sbjct: 139758 aagacaaaggatgacatattaatattcttcaagctgtatgatcctgaaaaggaagagcta 139699

                
Query: 136    ag 137
              ||
Sbjct: 139698 ag 139697



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 314    agcttgtagatggagacatattgtgctaccaaaaacgttgttctc 358
              |||||| |||||| |||||  | ||||||||||||||||||||||
Sbjct: 139211 agcttgaagatggtgacattatatgctaccaaaaacgttgttctc 139167



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 397    tctttctttgaatatgtccataatagacaggt 428
              ||||||||||||||| |||| |||||||||||
Sbjct: 139128 tctttctttgaatatatccaaaatagacaggt 139097
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>gb|AY104649.1| Zea mays PCO133877 mRNA sequence
          Length = 927

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 496 acatacgatgatgttgttgagaaagttgcacaacatcttggtatggatgatccttcaaa 554
           ||||| |||||||||||||||| ||||||||| || |||||  |||||||||| |||||
Sbjct: 266 acatatgatgatgttgttgagagagttgcacatcaacttgggttggatgatccatcaaa 324



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 232 attgagttgtatgaggaaataaaatttgagccaaatattatgtgcgaacaaattgac 288
           |||||| |||| |||||||| || |||||||||||| | ||||||||||| ||||||
Sbjct: 2   attgagctgtacgaggaaattaagtttgagccaaatgtgatgtgcgaacatattgac 58
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>gb|AY104905.1| Zea mays PCO064124 mRNA sequence
          Length = 781

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                       
Query: 484 tcaaaacgttccacatacgatgatgttgttgagaaagttgcacaacatcttggtatggat 543
           |||||||| |||||||| ||||||||||||||||| |||||  | || ||  ||||||||
Sbjct: 30  tcaaaacgctccacatatgatgatgttgttgagaaggttgctaagcaactacgtatggat 89

                                  
Query: 544 gatccttcaaaactccgccttac 566
           || ||||| ||| |||| |||||
Sbjct: 90  gacccttctaaaatccggcttac 112
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                            
Query: 502      gatgatgttgttgagaaagttgcacaacatcttggtatggatgatccttcaaaactccgc 561
                |||||||||||||||| ||||||||  || |||||  |||||||||| |||||| | |||
Sbjct: 18385827 gatgatgttgttgagagagttgcacgccaacttggcttggatgatccatcaaaaattcgc 18385886

                      
Query: 562      cttaca 567
                ||||||
Sbjct: 18385887 cttaca 18385892



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 245      aggaaataaaatttgagccaaatattatgtgcgaacaaattgac 288
                ||||||| || |||||||||||| | ||||||||||| ||||||
Sbjct: 18385016 aggaaattaagtttgagccaaatgtgatgtgcgaacacattgac 18385059
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>gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubiquitin protease
           mRNA, partial cds
          Length = 1593

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 502 gatgatgttgttgagaaagttgcacaacatcttggtatggatgatccttcaaaactccgc 561
           |||||||||||||||| ||||||||  || |||||  |||||||||| |||||| | |||
Sbjct: 184 gatgatgttgttgagagagttgcacgccaacttggcttggatgatccatcaaaaattcgc 243

                 
Query: 562 cttaca 567
           ||||||
Sbjct: 244 cttaca 249
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                            
Query: 502      gatgatgttgttgagaaagttgcacaacatcttggtatggatgatccttcaaaactccgc 561
                |||||||||||||||| ||||||||  || |||||  |||||||||| |||||| | |||
Sbjct: 18312053 gatgatgttgttgagagagttgcacgccaacttggcttggatgatccatcaaaaattcgc 18312112

                      
Query: 562      cttaca 567
                ||||||
Sbjct: 18312113 cttaca 18312118



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 245      aggaaataaaatttgagccaaatattatgtgcgaacaaattgac 288
                ||||||| || |||||||||||| | ||||||||||| ||||||
Sbjct: 18311242 aggaaattaagtttgagccaaatgtgatgtgcgaacacattgac 18311285
to top
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 502   gatgatgttgttgagaaagttgcacaacatcttggtatggatgatccttcaaaactccgc 561
             |||||||||||||||| ||||||||  || |||||  |||||||||| |||||| | |||
Sbjct: 37726 gatgatgttgttgagagagttgcacgccaacttggcttggatgatccatcaaaaattcgc 37785

                   
Query: 562   cttaca 567
             ||||||
Sbjct: 37786 cttaca 37791



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 245   aggaaataaaatttgagccaaatattatgtgcgaacaaattgac 288
             ||||||| || |||||||||||| | ||||||||||| ||||||
Sbjct: 36915 aggaaattaagtttgagccaaatgtgatgtgcgaacacattgac 36958
to top
>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full
            insert sequence
          Length = 3975

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                        
Query: 224  atgaagatattgagttgtatgaggaaataaaatttgagccaaatattatgtgcgaacaaa 283
            ||||||| |||||| | || |||||||| ||||||||||||||| | ||||| ||||| |
Sbjct: 2201 atgaagaaattgagctctacgaggaaattaaatttgagccaaatgtgatgtgtgaacata 2260

                 
Query: 284  ttgac 288
            |||||
Sbjct: 2261 ttgac 2265



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 502  gatgatgttgttgagaaagttgcacaacatcttggtatggatgatcc 548
            |||||||||||||||| |||||| |  || |||||| ||||||||||
Sbjct: 2479 gatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcc 2525
to top
>ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidase/ double-stranded DNA
            binding / ubiquitin thiolesterase/ ubiquitin-specific
            protease AT3G11910 mRNA, complete cds
          Length = 3813

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 97   cttttcttcaagctctatgaccctgaaaaagaagaactaagatatgttgg 146
            |||||||| || |||||||||||||| || | || |||||||||||||||
Sbjct: 2172 cttttctttaaactctatgaccctgagaacgcagtactaagatatgttgg 2221
to top
>gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence
          Length = 4231

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 97   cttttcttcaagctctatgaccctgaaaaagaagaactaagatatgttgg 146
            |||||||| || |||||||||||||| || | || |||||||||||||||
Sbjct: 2587 cttttctttaaactctatgaccctgagaacgcagtactaagatatgttgg 2636
to top
>gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiquitin
            carboxyl-terminal hydrolase (At3g11910) mRNA, complete
            cds
          Length = 3379

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 97   cttttcttcaagctctatgaccctgaaaaagaagaactaagatatgttgg 146
            |||||||| || |||||||||||||| || | || |||||||||||||||
Sbjct: 2077 cttttctttaaactctatgaccctgagaacgcagtactaagatatgttgg 2126
to top
>emb|AL590453.10| Human DNA sequence from clone RP11-294K17 on chromosome 1 Contains the
             3' end of a novel gene, complete sequence
          Length = 187461

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 389   atgtatcttctttctttgaatatgtcca 416
             |||||||||||||| |||||||||||||
Sbjct: 78004 atgtatcttctttccttgaatatgtcca 77977
to top
>gb|AC087243.7| Homo sapiens 12p BAC RP11-549J13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 22050

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 84    ggatgatattttacttttcttcaa 107
             ||||||||||||||||||||||||
Sbjct: 17335 ggatgatattttacttttcttcaa 17312
to top
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0077M24, complete sequence
          Length = 128920

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 245   aggaaataaaatttgagccaaatattatgtgcgaacaaattgac 288
             ||||||| ||||||||||||||| | ||||| ||||| ||||||
Sbjct: 88432 aggaaattaaatttgagccaaatgtgatgtgtgaacatattgac 88389



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 502   gatgatgttgttgagaaagttgcacaacatcttggtatggatgatcc 548
             |||||||||||||||| |||||| |  || |||||| ||||||||||
Sbjct: 85594 gatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcc 85548
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 245      aggaaataaaatttgagccaaatattatgtgcgaacaaattgac 288
                ||||||| ||||||||||||||| | ||||| ||||| ||||||
Sbjct: 20653424 aggaaattaaatttgagccaaatgtgatgtgtgaacatattgac 20653381



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 502      gatgatgttgttgagaaagttgcacaacatcttggtatggatgatcc 548
                |||||||||||||||| |||||| |  || |||||| ||||||||||
Sbjct: 20650586 gatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcc 20650540
to top
>gb|AC026310.24|AC026310 Homo sapiens 12 BAC RP11-662I13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 124000

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 84     ggatgatattttacttttcttcaa 107
              ||||||||||||||||||||||||
Sbjct: 119086 ggatgatattttacttttcttcaa 119063
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 245      aggaaataaaatttgagccaaatattatgtgcgaacaaattgac 288
                ||||||| ||||||||||||||| | ||||| ||||| ||||||
Sbjct: 20963659 aggaaattaaatttgagccaaatgtgatgtgtgaacatattgac 20963616



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 502      gatgatgttgttgagaaagttgcacaacatcttggtatggatgatcc 548
                |||||||||||||||| |||||| |  || |||||| ||||||||||
Sbjct: 20960821 gatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcc 20960775
to top
>ref|XM_476711.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3351

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 88   gatattttacttttcttcaagctctatgaccctgaaaaagaagaact 134
            ||||| || ||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 2083 gatatattgcttttcttcaaactctatgatcctgaaaaggaacaact 2129
to top
>gb|AY524977.1| Synodus variegatus mitochondrion, complete genome
          Length = 16448

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 90   tattttacttttcttcaagctct 112
            |||||||||||||||||||||||
Sbjct: 9268 tattttacttttcttcaagctct 9290
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 88      gatattttacttttcttcaagctctatgaccctgaaaaagaagaact 134
               ||||| || ||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 3451625 gatatattgcttttcttcaaactctatgatcctgaaaaggaacaact 3451671
to top
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 88    gatattttacttttcttcaagctctatgaccctgaaaaagaagaact 134
             ||||| || ||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 91445 gatatattgcttttcttcaaactctatgatcctgaaaaggaacaact 91491
to top
>ref|XM_534972.2| PREDICTED: Canis familiaris similar to CG1234-PA (LOC477778), mRNA
          Length = 3213

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 498  atacgatgatgttgttgagaaagttg 523
            ||||||||||||||||| ||||||||
Sbjct: 1798 atacgatgatgttgttgtgaaagttg 1773
to top
>emb|AL356390.24| Human DNA sequence from clone RP11-344H11 on chromosome 1 Contains the
              NR0B2 gene for nuclear receptor subfamily 0 (group B,
              member 2), the 5' end of a novel gene (FLJ12455), the NUDC
              gene fornuclear distribution gene C homolog (A. nidulans),
              a novel gene (FLJ34633), a ribosomal protein L12 (RPL12)
              pseudogene, a ribosomal protein L32 (RPL32) pseudogene, a
              novel pseudogene (DC2), two novel genes and two CpG
              islands, complete sequence
          Length = 140207

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 39     ggaggttgtgcaggagaatcatttga 64
              |||||||| |||||||||||||||||
Sbjct: 128265 ggaggttgggcaggagaatcatttga 128240
to top
>gb|AC004873.3| Homo sapiens PAC clone RP4-742P4 from 1, complete sequence
          Length = 131329

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 39    ggaggttgtgcaggagaatcatttga 64
             |||||||| |||||||||||||||||
Sbjct: 92241 ggaggttgggcaggagaatcatttga 92266
to top
>gb|AC068724.7|AC068724 Homo sapiens chromosome 15 clone RP11-473C18 map 15q15, complete
             sequence
          Length = 190727

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 507   tgttgttgagaaagttgcacaa 528
             ||||||||||||||||||||||
Sbjct: 79620 tgttgttgagaaagttgcacaa 79641
to top
>gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.58_E_17, complete sequence
          Length = 286758

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 235    gagttgtatgaggaaataaaat 256
              ||||||||||||||||||||||
Sbjct: 178102 gagttgtatgaggaaataaaat 178081
to top
>ref|XM_507934.1| PREDICTED: Pan troglodytes similar to chromosome 10 open reading
           frame 117; AD24 protein (LOC450621), mRNA
          Length = 2763

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 498 atacgatgatgttgttgagaaagtt 522
           ||||||||||||||||| |||||||
Sbjct: 587 atacgatgatgttgttgtgaaagtt 563
to top
>ref|NM_022451.9| Homo sapiens nucleolar complex associated 3 homolog (S. cerevisiae)
            (NOC3L), mRNA
          Length = 3475

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 498  atacgatgatgttgttgagaaagtt 522
            ||||||||||||||||| |||||||
Sbjct: 1181 atacgatgatgttgttgtgaaagtt 1157
to top
>gb|BC049850.1| Homo sapiens nucleolar complex associated 3 homolog (S. cerevisiae),
            mRNA (cDNA clone MGC:52005 IMAGE:5549517), complete cds
          Length = 3475

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 498  atacgatgatgttgttgagaaagtt 522
            ||||||||||||||||| |||||||
Sbjct: 1181 atacgatgatgttgttgtgaaagtt 1157
to top
>gb|BC030999.1| Homo sapiens nucleolar complex associated 3 homolog (S. cerevisiae),
            mRNA (cDNA clone IMAGE:4722101), with apparent retained
            intron
          Length = 2213

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 498  atacgatgatgttgttgagaaagtt 522
            ||||||||||||||||| |||||||
Sbjct: 1945 atacgatgatgttgttgtgaaagtt 1921
to top
>emb|AL627107.32| Human DNA sequence from clone XXyac-R12DG2 on chromosome 13 Contains 2
             novel genes, a calumenin (CALU) pseudogene, a novel gene
             (possible ortholog of RIKEN cDNA 4933433D23 gene) and a
             CpG island, complete sequence
          Length = 79018

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    gcaggagaatcatttgactct 68
             |||||||||||||||||||||
Sbjct: 78658 gcaggagaatcatttgactct 78678
to top
>emb|AL606514.3| Human DNA sequence from clone RP11-38J6 on chromosome 13 Contains a
            cyclophilin pseudogene, the 5' end of the COG3 gene for
            component of oligomeric golgi complex 3 and a CpG island,
            complete sequence
          Length = 39372

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   gcaggagaatcatttgactct 68
            |||||||||||||||||||||
Sbjct: 2303 gcaggagaatcatttgactct 2323
to top
>emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on chromosome 10 Contains the
             3'end of the PLCE1 gene for phospholipase C, epsilon 1
             (PLCE, KIAA1516), the gene for AD24 protein (FLJ12820),
             the 5'end  of a novel gene (KIAA0608) and a CpG island,
             complete sequence
          Length = 153449

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 498   atacgatgatgttgttgagaaagtt 522
             ||||||||||||||||| |||||||
Sbjct: 22467 atacgatgatgttgttgtgaaagtt 22491
to top
>emb|BX571690.6| Zebrafish DNA sequence from clone CH211-149N12 in linkage group 24,
             complete sequence
          Length = 53216

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   aagaactaagatatgttggaa 148
             |||||||||||||||||||||
Sbjct: 25253 aagaactaagatatgttggaa 25233
to top
>dbj|AK091246.1| Homo sapiens cDNA FLJ33927 fis, clone CTONG2017429
          Length = 2990

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 498  atacgatgatgttgttgagaaagtt 522
            ||||||||||||||||| |||||||
Sbjct: 1188 atacgatgatgttgttgtgaaagtt 1164
to top
>dbj|AK022882.1| Homo sapiens cDNA FLJ12820 fis, clone NT2RP2002736
          Length = 2401

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 498 atacgatgatgttgttgagaaagtt 522
           ||||||||||||||||| |||||||
Sbjct: 142 atacgatgatgttgttgtgaaagtt 118
to top
>gb|AC006055.1| Homo sapiens 3p22 Contig 7 PAC RPCI4-672N11 (Roswell Park Cancer
             Institute Human PAC Library) complete sequence
          Length = 91885

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   aaaaagaagaactaagatatg 142
             |||||||||||||||||||||
Sbjct: 33537 aaaaagaagaactaagatatg 33517
to top
>dbj|AB077992.1| Homo sapiens mRNA for AD24, complete cds
          Length = 2450

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 498  atacgatgatgttgttgagaaagtt 522
            ||||||||||||||||| |||||||
Sbjct: 1118 atacgatgatgttgttgtgaaagtt 1094
to top
>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7
          Length = 74350

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 404   ttgaatatgtccataatagacaggt 428
             ||||||||||||| |||||||||||
Sbjct: 46640 ttgaatatgtccagaatagacaggt 46616



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 88    gatattttacttttcttcaagctctatgaccc 119
             |||||| | |||||||||||||| ||||||||
Sbjct: 47325 gatattcttcttttcttcaagctttatgaccc 47294
to top
>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546,
             complete sequence
          Length = 107979

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 76    aagacaaaggatgatattttacttttcttcaagctctatgaccctgaaaaaga 128
             ||||||||||| |||||  | ||||| |||||| | ||||| |||||||||||
Sbjct: 80197 aagacaaaggacgatatacttctttttttcaagttatatgatcctgaaaaaga 80145
to top
>ref|NM_120743.2| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12);
            cysteine-type endopeptidase/ double-stranded DNA binding
            / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12)
            transcript variant AT5G06600.1 mRNA, complete cds
          Length = 3898

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 88   gatattttacttttcttcaagctctatgaccc 119
            |||||| | |||||||||||||| ||||||||
Sbjct: 2180 gatattcttcttttcttcaagctttatgaccc 2211
to top
>ref|NM_180452.1| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12);
            cysteine-type endopeptidase/ double-stranded DNA binding
            / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12)
            transcript variant AT5G06600.2 mRNA, complete cds
          Length = 3897

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 88   gatattttacttttcttcaagctctatgaccc 119
            |||||| | |||||||||||||| ||||||||
Sbjct: 2179 gatattcttcttttcttcaagctttatgaccc 2210
to top
>gb|AF467260.1| Ostrinia furnacalis mitochondrion, complete genome
          Length = 14536

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   tattttacttttcttcaagc 109
            ||||||||||||||||||||
Sbjct: 5209 tattttacttttcttcaagc 5228
to top
>gb|AY546093.1| Taxus cuspidata taxadiene synthase-like gene, partial sequence
          Length = 877

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 502 gatgatgttgttgagaaagt 521
           ||||||||||||||||||||
Sbjct: 555 gatgatgttgttgagaaagt 574
to top
>gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, complete sequence
          Length = 199094

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    ctttgaatatgtccataata 421
              ||||||||||||||||||||
Sbjct: 175007 ctttgaatatgtccataata 175026
to top
>gb|AY364469.1| Taxus canadensis clone Tc3003 taxa-4(5),11(12)-diene synthase mRNA,
            complete cds
          Length = 2589

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 2197 gatgatgttgttgagaaagt 2216
to top
>gb|DQ353394.1| Liometopum luctuosum voucher CS0214 cytochrome oxidase subunit I
           (COI) gene, partial cds; mitochondrial
          Length = 1026

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 591 accgaaacatcaatacatca 610
           ||||||||||||||||||||
Sbjct: 569 accgaaacatcaatacatca 588
to top
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    tatgatgtttccttcagttt 308
              ||||||||||||||||||||
Sbjct: 460567 tatgatgtttccttcagttt 460586
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>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence
          Length = 205764

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   aaattgactatgatgtttcc 300
             ||||||||||||||||||||
Sbjct: 11386 aaattgactatgatgtttcc 11367
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>gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosome 8, complete sequence
          Length = 178416

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   tctatgaccctgaaaaagaa 129
             ||||||||||||||||||||
Sbjct: 17275 tctatgaccctgaaaaagaa 17294
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>gb|AC092920.7| Homo sapiens 3 BAC RP11-255G21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164878

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ggaggttgtgcaggagaatc 58
             ||||||||||||||||||||
Sbjct: 20023 ggaggttgtgcaggagaatc 20004
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>gb|AC126264.3| Mus musculus BAC clone RP23-376F13 from chromosome 14, complete
             sequence
          Length = 169909

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    gaatcatttgactcttgctt 73
             ||||||||||||||||||||
Sbjct: 82316 gaatcatttgactcttgctt 82335
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>gb|AY424738.1| Taxus baccata taxadiene synthase (TXS) mRNA, complete cds
          Length = 2643

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 2197 gatgatgttgttgagaaagt 2216
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>ref|XM_721647.1| Plasmodium yoelii yoelii str. 17XNL helicase (PY06148) partial mRNA
          Length = 4421

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  aagccaaaacaagacgattt 470
            ||||||||||||||||||||
Sbjct: 2662 aagccaaaacaagacgattt 2681
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>gb|BC059042.1| Mus musculus cDNA clone IMAGE:6815954, partial cds
          Length = 3249

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  tctatgaccctgaaaaagaa 129
            ||||||||||||||||||||
Sbjct: 1167 tctatgaccctgaaaaagaa 1148
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>gb|AC111137.10| Mus musculus chromosome 5, clone RP23-357C4, complete sequence
          Length = 197271

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   tcttttcttgaaagcctcat 169
             ||||||||||||||||||||
Sbjct: 41987 tcttttcttgaaagcctcat 41968
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>gb|AY931015.1| Taxus wallichiana var. mairei taxadiene synthase gene, complete cds
          Length = 3987

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 3497 gatgatgttgttgagaaagt 3516
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>emb|AL158153.10| Human DNA sequence from clone RP11-373A9 on chromosome 9q13-21.2
             Contains a ribosomal protein L30  (RPL30) pseudogene and
             the 3' end of a novel gene (MGC21981), complete sequence
          Length = 45111

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   tctatgaccctgaaaaagaa 129
             ||||||||||||||||||||
Sbjct: 29489 tctatgaccctgaaaaagaa 29470
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>emb|AL137182.9| Human DNA sequence from clone RP1-257A15 on chromosome 6 Contains
            part of a novel gene, part of the gene for a novel
            protein (FLJ32724) and a CpG island, complete sequence
          Length = 120988

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  tgaggaaataaaatttgagccaaa 266
            |||||||| |||||||||||||||
Sbjct: 3690 tgaggaaaaaaaatttgagccaaa 3667
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>emb|AL035531.17|HS483L3 Human DNA sequence from clone RP3-483L3 on chromosome 6p25.1-25.3,
             complete sequence
          Length = 74513

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   tgtatcttctttctttgaat 409
             ||||||||||||||||||||
Sbjct: 29250 tgtatcttctttctttgaat 29231
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>emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23 on chromosome Xq13.1-21.1
             Contains the TBX22 gene for T-box 22, complete sequence
          Length = 132029

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   aaattgactatgatgtttcc 300
             ||||||||||||||||||||
Sbjct: 16273 aaattgactatgatgtttcc 16254
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>gb|AY142616.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12
            (At5g06600) mRNA, complete cds
          Length = 3379

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 88   gatattttacttttcttcaagctctatgaccc 119
            |||||| | |||||||||||||| ||||||||
Sbjct: 2068 gatattcttcttttcttcaagctttatgaccc 2099
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>gb|AF360198.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12
            (At5g06600) mRNA, complete cds
          Length = 3890

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 88   gatattttacttttcttcaagctctatgaccc 119
            |||||| | |||||||||||||| ||||||||
Sbjct: 2179 gatattcttcttttcttcaagctttatgaccc 2210
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>emb|AJ320538.1|TBA320538 Taxus baccata tasy gene for taxadiene synthase, exons 1-13
          Length = 3980

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 3488 gatgatgttgttgagaaagt 3507
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>gb|AF444065.1| Coccotrypes litoralis cytochrome oxidase subunit I (CO1) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1194

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 591 accgaaacatcaatacatca 610
           ||||||||||||||||||||
Sbjct: 353 accgaaacatcaatacatca 372
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>gb|AF444058.1| Coccotrypes cyperi cytochrome oxidase subunit I (CO1) gene, partial
           cds; mitochondrial gene for mitochondrial product
          Length = 1206

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 591 accgaaacatcaatacatca 610
           ||||||||||||||||||||
Sbjct: 365 accgaaacatcaatacatca 384
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>gb|AC093502.2| Drosophila melanogaster 3L BAC RP98-48C4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 166249

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   gatgttgttgagaaagttgc 524
             ||||||||||||||||||||
Sbjct: 40790 gatgttgttgagaaagttgc 40771
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>gb|AC104703.3| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 185404

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   gatgttgttgagaaagttgc 524
             ||||||||||||||||||||
Sbjct: 89245 gatgttgttgagaaagttgc 89226
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>gb|AY007207.1| Taxus chinensis taxadiene synthase mRNA, complete cds
          Length = 2706

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 2204 gatgatgttgttgagaaagt 2223
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>gb|AC106899.5| Homo sapiens BAC clone RP11-734N2 from 2, complete sequence
          Length = 132562

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    ctttctttgaatatgtccat 417
              ||||||||||||||||||||
Sbjct: 103318 ctttctttgaatatgtccat 103299
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>ref|NM_168571.2| Drosophila melanogaster CG32133-RA (CG32133), mRNA
          Length = 6885

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 505  gatgttgttgagaaagttgc 524
            ||||||||||||||||||||
Sbjct: 1315 gatgttgttgagaaagttgc 1296
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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 502     gatgatgttgttgagaaagt 521
               ||||||||||||||||||||
Sbjct: 1495795 gatgatgttgttgagaaagt 1495814
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>gb|AF187135.1| Xylosandrus cf. zimmermanni SCY05 cytochrome oxidase I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1179

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 591 accgaaacatcaatacatca 610
           ||||||||||||||||||||
Sbjct: 362 accgaaacatcaatacatca 381
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>gb|AF375309.1| Coccotrypes cyperi cytochrome oxidase I (CO1) gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1105

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 591 accgaaacatcaatacatca 610
           ||||||||||||||||||||
Sbjct: 353 accgaaacatcaatacatca 372
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>gb|AC087367.3| Homo sapiens chromosome 8, clone RP11-680O8, complete sequence
          Length = 133139

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    atgatattttacttttcttc 105
             ||||||||||||||||||||
Sbjct: 33148 atgatattttacttttcttc 33167
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>gb|AC026991.9| Homo sapiens, clone RP11-279L11, complete sequence
          Length = 169196

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    atgatattttacttttcttc 105
             ||||||||||||||||||||
Sbjct: 26846 atgatattttacttttcttc 26827
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>gb|AF326519.1|AF326519 Taxus brevifolia taxadiene synthase gene, partial cds
          Length = 4082

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 3536 gatgatgttgttgagaaagt 3555
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>gb|AF195750.1|AF195750 Plathemis lydia cytochrome oxidase I (COI) gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 716

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 591 accgaaacatcaatacatca 610
           ||||||||||||||||||||
Sbjct: 326 accgaaacatcaatacatca 345
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>gb|AF302663.1|AF302663 Arabidopsis thaliana ubiquitin-specific protease 12 (UBP12) mRNA,
            complete cds
          Length = 3427

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 88   gatattttacttttcttcaagctctatgaccc 119
            |||||| | |||||||||||||| ||||||||
Sbjct: 2107 gatattcttcttttcttcaagctttatgaccc 2138
to top
>gb|AY365032.2| Taxus chinensis var. mairei taxadiene synthase mRNA, complete cds
          Length = 2743

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 2277 gatgatgttgttgagaaagt 2296
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>emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-689J19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170588

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     cttcgaagacaaaggatgatattt 94
              |||||||||||| |||||||||||
Sbjct: 105784 cttcgaagacaagggatgatattt 105761
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>gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49 of 83 of the complete
              sequence
          Length = 350428

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    gatgttgttgagaaagttgc 524
              ||||||||||||||||||||
Sbjct: 287321 gatgttgttgagaaagttgc 287340
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>gb|AC111107.18| Mus musculus chromosome 5, clone RP23-195P3, complete sequence
          Length = 203785

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    tcttttcttgaaagcctcat 169
              ||||||||||||||||||||
Sbjct: 192009 tcttttcttgaaagcctcat 191990
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>gb|BC084278.1| Xenopus laevis hypothetical LOC495105, mRNA (cDNA clone MGC:82357
            IMAGE:4202612), complete cds
          Length = 3733

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 500  acgatgatgttgttgagaaagttg 523
            ||||||||||||||| ||||||||
Sbjct: 1146 acgatgatgttgttgtgaaagttg 1123
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>gb|U48796.1|TBU48796 Taxus brevifolia taxadiene synthase (TDC1) mRNA, complete cds
          Length = 2700

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 2218 gatgatgttgttgagaaagt 2237
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>gb|AY461450.1| Taxus x media taxadiene synthase (txs) mRNA, complete cds
          Length = 2771

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 2309 gatgatgttgttgagaaagt 2328
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>gb|DQ305407.1| Taxus cuspidata taxadiene synthase (tasy) gene, complete cds
          Length = 3990

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  gatgatgttgttgagaaagt 521
            ||||||||||||||||||||
Sbjct: 3497 gatgatgttgttgagaaagt 3516
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>gb|AC130474.12| Mus musculus chromosome 7, clone RP23-178C20, complete sequence
          Length = 232792

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    cggttctgagttgaggttgt 34
             ||||||||||||||||||||
Sbjct: 17823 cggttctgagttgaggttgt 17804
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>gb|AC122767.16| Mus musculus chromosome 7, clone RP24-143L4, complete sequence
          Length = 192484

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    cggttctgagttgaggttgt 34
             ||||||||||||||||||||
Sbjct: 20708 cggttctgagttgaggttgt 20727
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>emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chromosome X, complete
              sequence
          Length = 213401

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 247    gaaataaaatttgagccaaatatt 270
              |||| |||||||||||||||||||
Sbjct: 133423 gaaagaaaatttgagccaaatatt 133400
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>dbj|AP002936.1| Danacetichthys galathenus mitochondrial DNA, complete genome
          Length = 16555

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   tattttacttttcttcaagc 109
            ||||||||||||||||||||
Sbjct: 9281 tattttacttttcttcaagc 9300


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,254,785
Number of Sequences: 3902068
Number of extensions: 7254785
Number of successful extensions: 148849
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148359
Number of HSP's gapped (non-prelim): 485
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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