ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9i24 |
|---|---|
| Clone Library Name | barley_pub |
>NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)| Length = 720 Score = 38.9 bits (89), Expect = 0.015 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 3/143 (2%) Frame = +1 Query: 163 AAFSMVSSMVKKYAMEQAFKSMMTQAPPNTFGANSPFPFSMPPQ--AGSTAPS-SYPYSG 333 ++F+ S+ ++K E + + + ++ +N F FS+P + ++ PS S+ Sbjct: 316 SSFTFGSTTIEKKNDENSTSNSKPEKSSDSNDSNPSFSFSIPSKNTPDASKPSFSFGVPN 375 Query: 334 PRKNTPKXXXXXXXXXXXXXXXXXEAADVAETSKPSKKFAFVDVSPEELQKQKELQSSLE 513 KN + D KPS K AF +S +K+KE + + Sbjct: 376 SSKNETSKPVFSFGAATPSAKEASQEDDNNNVEKPSSKPAFNLISNAGTEKEKESKKDSK 435 Query: 514 TVDIRSDSTGSETKDDSEQQVPT 582 S GSE+KD + +P+ Sbjct: 436 PAFSFGISNGSESKDSDKPSLPS 458
>NPBL_CAEEL (Q95XZ5) Nipped-B-like protein pqn-85| (Prion-like-(Q/n-rich)-domain-bearing protein 85) (SCC2 homolog) Length = 2203 Score = 34.7 bits (78), Expect = 0.28 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Frame = +2 Query: 236 RHHQTHLVRTRHSHSPCHHRQVPRHQVVIHTQGQ-GKIRQKVQLLMFQLVMWQQLDLRKQ 412 + Q +L++ + HH+Q +HQ + Q Q ++ Q M QL+ QQ ++Q Sbjct: 77 QQQQQYLMQQQQQQQQLHHQQQQQHQNIAQPQAQHHQMNMFTQHQMLQLMQQQQQQQQQQ 136 Query: 413 PMWPKHLSLQRNLPLLMFLPK 475 P+ +QR P+ +P+ Sbjct: 137 PV----QQIQRQQPIAQPIPQ 153
>MAD4_MOUSE (Q60948) Max-interacting transcriptional repressor MAD4| (Max-associated protein 4) (MAX dimerization protein 4) Length = 209 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%) Frame = +1 Query: 484 KQKELQSSLETVD-IRSDSTGSE-TKDDSEQQVPTNGAAFKP 603 K++ Q S+++V+ +R+DSTGS + DDSEQ+V G F P Sbjct: 127 KRRLEQLSVQSVERVRTDSTGSAVSTDDSEQEVDIEGMEFGP 168
>MAD4_HUMAN (Q14582) Max-interacting transcriptional repressor MAD4| (Max-associated protein 4) (MAX dimerization protein 4) Length = 209 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%) Frame = +1 Query: 484 KQKELQSSLETVD-IRSDSTGSE-TKDDSEQQVPTNGAAFKP 603 K++ Q S+++V+ +R+DSTGS + DDSEQ+V G F P Sbjct: 127 KRRLEQLSVQSVERVRTDSTGSAVSTDDSEQEVDIEGMEFGP 168
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 32.0 bits (71), Expect = 1.8 Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Frame = +2 Query: 68 HRRELVPCLPCRPPHHILVHLFSGLALV*HCPRHFPWSLRW*RNMQWNKHSSQ**PRHHQ 247 H E++ + PHH HL S P H P+ Q H P H Q Sbjct: 102 HMMEMMGSRQDQTPHH---HLHSHPHQHQTLPPHHPYP----HQHQHPAHHPHPQPHHQQ 154 Query: 248 THLVRTRHSH---SPCHHRQVPRHQVVIHTQGQGKIRQKVQ 361 H HSH P HH+ P +HT Q ++ Q Sbjct: 155 NHPHHHSHSHLHAHPAHHQTSPHPP--LHTGNQAQVSPATQ 193
>ANXA7_XENLA (Q92125) Annexin A7 (Annexin VII) (Synexin)| Length = 512 Score = 31.6 bits (70), Expect = 2.4 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 16/121 (13%) Frame = +1 Query: 232 TQAPPNTFGANSP--FPFSMPPQAGSTAPSSYPYS-GPRKNTPKXXXXXXXXXXXXXXXX 402 +Q ++GA P P MP Q APS YP P + TP Sbjct: 149 SQPSSQSYGAGGPGQMPGQMPGQMPGQAPSGYPSGPAPAQPTPYAAAMTATQGTIKAAPN 208 Query: 403 XEAADVAETSKPSKKFAFVDVSPEEL------QKQKELQSSLETV-------DIRSDSTG 543 +A AE + + K D P ++ +++++Q++ +T D++S+ +G Sbjct: 209 FDALSDAEKLRKAMKGFGTDEKPIDVVANRSNDQRQKIQAAFKTAYGKDLIKDLKSELSG 268 Query: 544 S 546 + Sbjct: 269 N 269
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 31.2 bits (69), Expect = 3.1 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Frame = +2 Query: 68 HRRELVPCLPCRPPHHILVHLFSGLALV*HCPRHFPWSLRW*RNMQWNKHSSQ**PRHHQ 247 H E++ + PHH H+ S P H P+ Q H P H Q Sbjct: 257 HMMEMMGSRQDQTPHH---HMHSHPHQHQTLPPHHPYP----HQHQHPAHHPHPQPHHQQ 309 Query: 248 THLVRTRHSH---SPCHHRQVPRHQVVIHTQGQGKIRQKVQ 361 H HSH P HH+ P +HT Q ++ Q Sbjct: 310 NHPHHHSHSHLHAHPAHHQTSPHPP--LHTGNQAQVSPATQ 348
>PMPC_CHLMU (Q9PJY1) Probable outer membrane protein pmpC precursor| (Polymorphic membrane protein C) Length = 1460 Score = 31.2 bits (69), Expect = 3.1 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 496 LQSSLETVDIRSDSTGSETKDDSEQQVPTNGAAFK 600 ++S +ET D+ S TGS + + +P NGA ++ Sbjct: 23 VESQIETKDLNSSRTGSSSSQSFTEIIPENGAEYR 57
>US6NL_HUMAN (Q92738) USP6 N-terminal-like protein (Related to the N-terminus of| tre) (RN-tre) Length = 828 Score = 30.8 bits (68), Expect = 4.1 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 262 NSPFPFSMPPQAGSTAPSSYPYSGP 336 +SP + P A +PS YPYSGP Sbjct: 783 DSPVRYKASPAAEDASPSGYPYSGP 807
>SH2D3_HUMAN (Q8N5H7) SH2 domain-containing protein 3C (Novel SH2-containing| protein 3) Length = 860 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +1 Query: 433 KPSKKFAFVDVSPEELQKQKELQSSLETVDIRSDS--TGSETKDDSEQQVPTNG 588 K SK+ +D SPE+L K+ E + L + D+RS + G ++ SE V NG Sbjct: 185 KFSKEKYILDSSPEKLHKELEEELKLSSTDLRSHAWYHGRIPREVSETLVQRNG 238
>SH2D3_MOUSE (Q9QZS8) SH2 domain-containing protein 3C (SH2 domain-containing| Eph receptor-binding protein 1) (Cas/HEF1-associated signal transducer) Length = 854 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +1 Query: 433 KPSKKFAFVDVSPEELQKQKELQSSLETVDIRSDS--TGSETKDDSEQQVPTNG 588 K SK+ +D SPE+L K+ E + L + D+RS + G ++ SE V NG Sbjct: 180 KFSKEKYILDSSPEKLHKELEEELKLSSTDLRSHAWYHGRIPREVSETLVQRNG 233
>ALDH_AGABI (O74187) Aldehyde dehydrogenase (EC 1.2.1.3) (ALDDH)| Length = 500 Score = 30.0 bits (66), Expect = 6.9 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Frame = -3 Query: 313 LVPWNLPVV--AWRMGMASSHQMCLVVPGSSLT 221 ++PWN P++ AW++G A + C+V+ S T Sbjct: 166 IIPWNFPLLMLAWKIGPALATGNCIVLKPSEFT 198
>MSX2_RAT (P52953) Homeobox protein MSX-2 (Hox-8.1) (Fragment)| Length = 139 Score = 30.0 bits (66), Expect = 6.9 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +1 Query: 220 KSMMTQAPPNTFGANSPFPFSMPPQAGSTAPSSYPYSGP 336 K M P G + PFP + P QA S +SYP+ P Sbjct: 79 KLKMAAKPMLPSGFSLPFPINSPLQAASIYSASYPFHRP 117
>HRP3_PLAFS (P14586) Histidine-rich protein| Length = 82 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Frame = +2 Query: 236 RHHQT--HLVRTRHSHSPCHHRQVPRHQVVIHTQGQ 337 RHH HL H H HHR RHQ++ + Q Sbjct: 12 RHHHLNHHLYHRHHHHRHHHHRHHHRHQILHQNRHQ 47
>MSX2_CHICK (P28362) Homeobox protein MSX-2 (CHOX-8) (GHox-8)| Length = 259 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +1 Query: 220 KSMMTQAPPNTFGANSPFPFSMPPQAGSTAPSSYPYSGP 336 K M P G + PFP + P QA S +SYP+ P Sbjct: 199 KLKMAAKPMLPSGFSLPFPINSPIQAASLYGTSYPFHRP 237
>ALDB_ECOLI (P37685) Aldehyde dehydrogenase B (EC 1.2.1.-)| Length = 512 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 346 YFSLALSMDNYLVPWNLPVV--AWRMGMASSHQMCLVVPGSSLT*MLVPL 203 +F L + ++PWN P++ +W+M A + C+V+ + LT + V L Sbjct: 156 HFHEPLGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLL 205
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 244 PNTFGANSPFPFSMPPQAGSTAPSSYPYSGPRKNTP 351 P+T A +PFPF +P Q + APS P++N P Sbjct: 280 PSTQSATNPFPFPVPQQQFNQAPS---MGIPQQNRP 312
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = +1 Query: 244 PNTFGANSPFPFSMP-PQAGSTAPSSYPYSGPRKN 345 P G N P P SMP PQ G P P GPR N Sbjct: 270 PQAPGGNRPSPGSMPRPQGGGAGPR--PGGGPRPN 302
>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) Length = 5085 Score = 29.6 bits (65), Expect = 9.0 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%) Frame = +1 Query: 433 KPSKKFAFVDVSPEELQKQKELQSSLETVDI--------RSDSTGSETKDDSEQQVPT 582 K KK +SPE+ Q Q++ Q++ ET+DI S K DSEQ P+ Sbjct: 1379 KAEKKTQPQKISPEKPQDQQKTQTASETLDITISEEEIKESQEKKVSPKKDSEQGFPS 1436
>MSX2_MOUSE (Q03358) Homeobox protein MSX-2 (Hox-8.1)| Length = 267 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +1 Query: 220 KSMMTQAPPNTFGANSPFPFSMPPQAGSTAPSSYPYSGP 336 K M P G + PFP + P QA S +SYP+ P Sbjct: 207 KLKMAAKPMLPSGFSLPFPINSPLQAASIYGASYPFHRP 245
>MSX2_CANFA (Q9GK08) Homeobox protein MSX-2 (Hox-8)| Length = 267 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +1 Query: 220 KSMMTQAPPNTFGANSPFPFSMPPQAGSTAPSSYPYSGP 336 K M P G + PFP + P QA S +SYP+ P Sbjct: 207 KLKMAAKPMLPSGFSLPFPINSPLQAASIYGASYPFHRP 245 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.309 0.124 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,381,086 Number of Sequences: 219361 Number of extensions: 2210283 Number of successful extensions: 5358 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5065 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5336 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
