ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9i24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK098870.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 6e-69
2dbj|AK065119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
3dbj|AK062578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
4gb|BT018512.1| Zea mays clone EL01N0430B11.d mRNA sequence 210 4e-51
5ref|XM_472609.1| Oryza sativa (japonica cultivar-group), predic... 145 2e-31
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
7emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4,... 139 1e-29
8gb|AY157668.1| Pisum sativum chloroplast protein translocon comp... 60 1e-05
9emb|AJ243758.1|PSA243758 Pisum sativum mRNA for chloroplastic in... 60 1e-05
10gb|AC011388.7| Homo sapiens chromosome 5 clone CTB-171P15, compl... 44 0.60
11emb|AL162398.34| Human DNA sequence from clone RP11-29E9 on chro... 42 2.4
12gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 42 2.4
13emb|AL133225.2|SPAC25B8 S.pombe chromosome I cosmid c25B8 42 2.4
14gb|DQ374087.1| Beta vulgaris chromosome 9 clone BAC33 genomic se... 42 2.4
15gb|AC073427.7| Homo sapiens BAC clone RP11-746K19 from 4, comple... 42 2.4
16gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 42 2.4
17ref|NM_193791.1| Oryza sativa (japonica cultivar-group), predic... 40 9.4
18gb|AF131215.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-... 40 9.4
19emb|Z81538.1|CEF45H10 Caenorhabditis elegans Cosmid F45H10, comp... 40 9.4
20emb|AL359750.16| Human DNA sequence from clone RP11-24A10 on chr... 40 9.4
21gb|AC128681.6| Homo sapiens 12 BAC RP11-65M12 (Roswell Park Canc... 40 9.4
22emb|BX571874.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 9.4
23emb|AL133315.1|ATT8P19 Arabidopsis thaliana DNA chromosome 3, BA... 40 9.4
24ref|XM_624461.1| PREDICTED: Apis mellifera similar to ENSANGP000... 40 9.4
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
26gb|AC007462.3| Homo sapiens BAC clone RP11-85C4 from 2, complete... 40 9.4
27gb|AC100809.9| Homo sapiens chromosome 8, clone CTC-493P15, comp... 40 9.4
28dbj|AP003202.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
29dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 9.4
30dbj|AK119316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.4
31gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 9.4

>dbj|AK098870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A22, full
           insert sequence
          Length = 1728

 Score =  270 bits (136), Expect = 6e-69
 Identities = 297/350 (84%), Gaps = 3/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 76  ggaactggtaccctgcctcccatgccgcccccctcatcatatattggttcacctgttttc 135
           ||||| ||| |||| ||||||||||| ||||| || ||||| || ||||| |||||||||
Sbjct: 302 ggaacgggttccctacctcccatgccacccccatcgtcatacatcggttcgcctgttttc 361

                                                                       
Query: 136 tggattggcattggtgtagcattgtccgcggcattttccatggtctcttcgatggtaaag 195
           ||||||||  ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 362 tggattggagttggtgtagcattgtccgcagcattttctatggtctcttcgatggtaaag 421

                                                                       
Query: 196 aaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacattt 255
           |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 422 aaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactttt 481

                                                                       
Query: 256 ggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaagt 315
           ||  | |||||||| ||||||||  |||||||||||||||||| | |  | || || || 
Sbjct: 482 ggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctcctagc 541

                                                                       
Query: 316 agttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttgatgtt 372
           ||||| |||||||||   ||||||||| |||   | ||  ||  ||||||||| ||||||
Sbjct: 542 agttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatgtt 601

                                                             
Query: 373 tcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422
           ||||||| | | |||| |||||||||| ||| |||||  || ||||||||
Sbjct: 602 tcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 651



 Score =  119 bits (60), Expect = 1e-23
 Identities = 200/246 (81%), Gaps = 3/246 (1%)
 Strand = Plus / Plus

                                                                       
Query: 442 aagaaatttgcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaa 501
           |||||||||||||||||||| |||||||| |||||||||||  ||   ||||| ||||||
Sbjct: 665 aagaaatttgcctttgttgacgtttctcctgaagagttgcagcaa---aaggaacttcaa 721

                                                                       
Query: 502 tcttcattggagacagtagatataagaagtgatagcactgggagtgaaacgaaggatgat 561
           |||||| |||||||||| ||| ||| |||||| || |    ||||||||| | ||| |||
Sbjct: 722 tcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggat 781

                                                                       
Query: 562 tccgaacaacaagttcctacaaatggtgctgcttttaagccaagtgaagattcctctacc 621
            | || ||| ||| ||| ||||||||  |||||||||||   | ||||| |||  ||| |
Sbjct: 782 actgagcaaaaagctccaacaaatggaactgcttttaagatgaatgaaggttctgctagc 841

                                                                       
Query: 622 tggacaactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatg 681
            ||||||||||||| || || ||||| |||||| | ||  ||||||||||||||||||||
Sbjct: 842 gggacaactgaatctagcaattcagggcctatgttgtccgttgatacaattgagaaaatg 901

                 
Query: 682 atggaa 687
           ||||||
Sbjct: 902 atggaa 907



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>dbj|AK065119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O14, full
           insert sequence
          Length = 1938

 Score =  268 bits (135), Expect = 2e-68
 Identities = 287/337 (85%), Gaps = 3/337 (0%)
 Strand = Plus / Plus

                                                                       
Query: 76  ggaactggtaccctgcctcccatgccgcccccctcatcatatattggttcacctgttttc 135
           ||||| ||| |||| ||||||||||| ||||| || ||||| || ||||| |||||||||
Sbjct: 392 ggaacgggttccctacctcccatgccacccccatcgtcatacatcggttcgcctgttttc 451

                                                                       
Query: 136 tggattggcattggtgtagcattgtccgcggcattttccatggtctcttcgatggtaaag 195
           ||||||||  ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 452 tggattggagttggtgtagcattgtccgcagcattttctatggtctcttcgatggtaaag 511

                                                                       
Query: 196 aaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacattt 255
           |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 512 aaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactttt 571

                                                                       
Query: 256 ggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaagt 315
           ||  | |||||||| ||||||||  |||||||||||||||||| | |  | || || || 
Sbjct: 572 ggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctcctagc 631

                                                                       
Query: 316 agttatccatactcagggccaaggaaaaatacg---ccaaaaggtgcaactgttgatgtt 372
           ||||| |||||||||   ||||||||| ||||    ||  ||  ||||||||| ||||||
Sbjct: 632 agttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatgtt 691

                                                
Query: 373 tcagctagtgatgtggcagcaactggatcttcggaag 409
           ||||||| | | |||| |||||||||| ||| |||||
Sbjct: 692 tcagctactaaagtggaagcaactggaactttggaag 728



 Score =  111 bits (56), Expect = 3e-21
 Identities = 199/246 (80%), Gaps = 3/246 (1%)
 Strand = Plus / Plus

                                                                       
Query: 442 aagaaatttgcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaa 501
           |||||||||||||||||||| |||||||| ||||||||||   | || ||||| ||||||
Sbjct: 755 aagaaatttgcctttgttgacgtttctcctgaagagttgc---agcaaaaggaacttcaa 811

                                                                       
Query: 502 tcttcattggagacagtagatataagaagtgatagcactgggagtgaaacgaaggatgat 561
           |||||| |||||||||| ||| ||| |||||| || |    ||||||||| | ||| |||
Sbjct: 812 tcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggat 871

                                                                       
Query: 562 tccgaacaacaagttcctacaaatggtgctgcttttaagccaagtgaagattcctctacc 621
            | || ||| ||| ||| ||||||||  |||||||||||   | ||||| |||  ||| |
Sbjct: 872 actgagcaaaaagctccaacaaatggaactgcttttaagatgaatgaaggttctgctagc 931

                                                                       
Query: 622 tggacaactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatg 681
            ||||||||||||| || || ||||| |||||| | ||  ||||||||||||||||| ||
Sbjct: 932 gggacaactgaatctagcaattcagggcctatgttgtccgttgatacaattgagaaagtg 991

                 
Query: 682 atggaa 687
           ||||||
Sbjct: 992 atggaa 997



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>dbj|AK062578.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H07, full
           insert sequence
          Length = 1764

 Score =  262 bits (132), Expect = 1e-66
 Identities = 296/350 (84%), Gaps = 3/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 76  ggaactggtaccctgcctcccatgccgcccccctcatcatatattggttcacctgttttc 135
           ||||| ||| |||| ||||||||||| ||||| || ||||| || ||||| |||||||||
Sbjct: 338 ggaacgggttccctacctcccatgccacccccatcgtcatacatcggttcgcctgttttc 397

                                                                       
Query: 136 tggattggcattggtgtagcattgtccgcggcattttccatggtctcttcgatggtaaag 195
           ||||||||  ||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 398 tggattggagttggtgtagcattgtccgcagcattttctatggtctctccgatggtaaag 457

                                                                       
Query: 196 aaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacattt 255
           |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 458 aaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactttt 517

                                                                       
Query: 256 ggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaagt 315
           ||  | |||||||| ||||||||  |||||||||||||||||| | |  | || || || 
Sbjct: 518 ggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctcctagc 577

                                                                       
Query: 316 agttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttgatgtt 372
           ||||| |||||||||   ||||||||| |||   | ||  ||  ||||||||| ||||||
Sbjct: 578 agttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatgtt 637

                                                             
Query: 373 tcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422
           ||||||| | | |||| |||||||||| ||| |||||  || ||||||||
Sbjct: 638 tcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 687



 Score =  119 bits (60), Expect = 1e-23
 Identities = 200/246 (81%), Gaps = 3/246 (1%)
 Strand = Plus / Plus

                                                                       
Query: 442 aagaaatttgcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaa 501
           |||||||||||||||||||| |||||||| |||||||||||  ||   ||||| ||||||
Sbjct: 701 aagaaatttgcctttgttgacgtttctcctgaagagttgcagcaa---aaggaacttcaa 757

                                                                       
Query: 502 tcttcattggagacagtagatataagaagtgatagcactgggagtgaaacgaaggatgat 561
           |||||| |||||||||| ||| ||| |||||| || |    ||||||||| | ||| |||
Sbjct: 758 tcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggat 817

                                                                       
Query: 562 tccgaacaacaagttcctacaaatggtgctgcttttaagccaagtgaagattcctctacc 621
            | || ||| ||| ||| ||||||||  |||||||||||   | ||||| |||  ||| |
Sbjct: 818 actgagcaaaaagctccaacaaatggaactgcttttaagatgaatgaaggttctgctagc 877

                                                                       
Query: 622 tggacaactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatg 681
            ||||||||||||| || || ||||| |||||| | ||  ||||||||||||||||||||
Sbjct: 878 gggacaactgaatctagcaattcagggcctatgttgtccgttgatacaattgagaaaatg 937

                 
Query: 682 atggaa 687
           ||||||
Sbjct: 938 atggaa 943



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>gb|BT018512.1| Zea mays clone EL01N0430B11.d mRNA sequence
          Length = 1805

 Score =  210 bits (106), Expect = 4e-51
 Identities = 190/218 (87%)
 Strand = Plus / Plus

                                                                       
Query: 78  aactggtaccctgcctcccatgccgcccccctcatcatatattggttcacctgttttctg 137
           |||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 331 aactggcaccctgcctcccatgcctcccccatcatcatacattggttcgcctgttttctg 390

                                                                       
Query: 138 gattggcattggtgtagcattgtccgcggcattttccatggtctcttcgatggtaaagaa 197
           ||||||  |||||| ||||||||| | ||| ||| ||| ||  ||||| ||| |||||||
Sbjct: 391 gattggagttggtggagcattgtctggggcgtttaccacgggttcttccatgctaaagaa 450

                                                                       
Query: 198 atatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacatttgg 257
           |||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct: 451 atatgccatggaacaagcatttaagtcaatgatgacccaagcaccaccaaactcatttgg 510

                                                 
Query: 258 tgcgaactcgccattcccattctccatgccaccacagg 295
             | |||||||| ||||||||   ||||||||||||||
Sbjct: 511 gtccaactcgcctttcccatttggcatgccaccacagg 548



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                       
Query: 626 caactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatgatgg 685
           |||||||||||||| | |||||||||||||||||| |||| ||||||||||| |||||||
Sbjct: 879 caactgaatccagtcaatcaggacctatgctatctgttgagacaattgagaagatgatgg 938

             
Query: 686 aa 687
           ||
Sbjct: 939 aa 940



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 436 ccttcaaagaaatttgcctttgttgatgtttctcccgaagagttgca 482
           ||||| ||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 692 ccttctaagaattttgcatttgttgatgtttctcccgaagatttgca 738



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>ref|XM_472609.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1131

 Score =  145 bits (73), Expect = 2e-31
 Identities = 195/235 (82%), Gaps = 3/235 (1%)
 Strand = Plus / Plus

                                                                       
Query: 191 taaagaaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaaca 250
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 308 taaagaaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaaca 367

                                                                       
Query: 251 catttggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcac 310
           | |||||  | |||||||| ||||||||  |||||||||||||||||| | |  | || |
Sbjct: 368 cttttggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctc 427

                                                                       
Query: 311 caagtagttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttg 367
           | || ||||| |||||||||   ||||||||| |||   | ||  ||  ||||||||| |
Sbjct: 428 ctagcagttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcg 487

                                                                  
Query: 368 atgtttcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422
           |||||||||||| | | |||| |||||||||| ||| |||||  || ||||||||
Sbjct: 488 atgtttcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 542



 Score =  119 bits (60), Expect = 1e-23
 Identities = 200/246 (81%), Gaps = 3/246 (1%)
 Strand = Plus / Plus

                                                                       
Query: 442 aagaaatttgcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaa 501
           |||||||||||||||||||| |||||||| |||||||||||  ||   ||||| ||||||
Sbjct: 556 aagaaatttgcctttgttgacgtttctcctgaagagttgcagcaa---aaggaacttcaa 612

                                                                       
Query: 502 tcttcattggagacagtagatataagaagtgatagcactgggagtgaaacgaaggatgat 561
           |||||| |||||||||| ||| ||| |||||| || |    ||||||||| | ||| |||
Sbjct: 613 tcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggat 672

                                                                       
Query: 562 tccgaacaacaagttcctacaaatggtgctgcttttaagccaagtgaagattcctctacc 621
            | || ||| ||| ||| ||||||||  |||||||||||   | ||||| |||  ||| |
Sbjct: 673 actgagcaaaaagctccaacaaatggaactgcttttaagatgaatgaaggttctgctagc 732

                                                                       
Query: 622 tggacaactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatg 681
            ||||||||||||| || || ||||| |||||| | ||  ||||||||||||||||||||
Sbjct: 733 gggacaactgaatctagcaattcagggcctatgttgtccgttgatacaattgagaaaatg 792

                 
Query: 682 atggaa 687
           ||||||
Sbjct: 793 atggaa 798



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  139 bits (70), Expect = 1e-29
 Identities = 192/232 (82%), Gaps = 3/232 (1%)
 Strand = Plus / Minus

                                                                            
Query: 194      agaaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacat 253
                |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 21898688 agaaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactt 21898629

                                                                            
Query: 254      ttggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaa 313
                ||||  | |||||||| ||||||||  |||||||||||||||||| | |  | || || |
Sbjct: 21898628 ttggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctccta 21898569

                                                                            
Query: 314      gtagttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttgatg 370
                | ||||| |||||||||   ||||||||| |||   | ||  ||  ||||||||| ||||
Sbjct: 21898568 gcagttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatg 21898509

                                                                    
Query: 371      tttcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422
                ||||||||| | | |||| |||||||||| ||| |||||  || ||||||||
Sbjct: 21898508 tttcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 21898457



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                           
Query: 121      ggttcacctgttttctggattggcattggtgtagcattgtccgcggcattttccatggt 179
                ||||| |||||||||||||||||  ||||||||||||||||||| |||||||| |||||
Sbjct: 21900157 ggttcgcctgttttctggattggagttggtgtagcattgtccgcagcattttctatggt 21900099



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 71/83 (85%), Gaps = 3/83 (3%)
 Strand = Plus / Minus

                                                                            
Query: 451      gcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaatcttcattg 510
                ||||||||||| |||||||| ||||||||||   | || ||||| |||||||||||| ||
Sbjct: 21898295 gcctttgttgacgtttctcctgaagagttgc---agcaaaaggaacttcaatcttcactg 21898239

                                       
Query: 511      gagacagtagatataagaagtga 533
                |||||||| ||| ||| ||||||
Sbjct: 21898238 gagacagtggatgtaaaaagtga 21898216



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 662      ttgatacaattgagaaaatgatggaa 687
                ||||||||||||||||||||||||||
Sbjct: 21897892 ttgatacaattgagaaaatgatggaa 21897867



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>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01,
             complete sequence
          Length = 127713

 Score =  139 bits (70), Expect = 1e-29
 Identities = 192/232 (82%), Gaps = 3/232 (1%)
 Strand = Plus / Minus

                                                                         
Query: 194   agaaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacat 253
             |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 83389 agaaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactt 83330

                                                                         
Query: 254   ttggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaa 313
             ||||  | |||||||| ||||||||  |||||||||||||||||| | |  | || || |
Sbjct: 83329 ttggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctccta 83270

                                                                         
Query: 314   gtagttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttgatg 370
             | ||||| |||||||||   ||||||||| |||   | ||  ||  ||||||||| ||||
Sbjct: 83269 gcagttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatg 83210

                                                                 
Query: 371   tttcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422
             ||||||||| | | |||| |||||||||| ||| |||||  || ||||||||
Sbjct: 83209 tttcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 83158



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 121   ggttcacctgttttctggattggcattggtgtagcattgtccgcggcattttccatggt 179
             ||||| |||||||||||||||||  ||||||||||||||||||| |||||||| |||||
Sbjct: 84858 ggttcgcctgttttctggattggagttggtgtagcattgtccgcagcattttctatggt 84800



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 71/83 (85%), Gaps = 3/83 (3%)
 Strand = Plus / Minus

                                                                         
Query: 451   gcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaatcttcattg 510
             ||||||||||| |||||||| ||||||||||   | || ||||| |||||||||||| ||
Sbjct: 82996 gcctttgttgacgtttctcctgaagagttgc---agcaaaaggaacttcaatcttcactg 82940

                                    
Query: 511   gagacagtagatataagaagtga 533
             |||||||| ||| ||| ||||||
Sbjct: 82939 gagacagtggatgtaaaaagtga 82917



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 662   ttgatacaattgagaaaatgatggaa 687
             ||||||||||||||||||||||||||
Sbjct: 82593 ttgatacaattgagaaaatgatggaa 82568



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>gb|AY157668.1| Pisum sativum chloroplast protein translocon component Tic40
           precursor (Tic40) mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1311

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 190 gtaaagaaatatgcaatggaacaagcattcaagtcaatgatg 231
           |||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 367 gtaaagaaatatgcaatgcaacaagctttcaagtccatgatg 408



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>emb|AJ243758.1|PSA243758 Pisum sativum mRNA for chloroplastic inner envelope protein
           translocon (Tic40 gene)
          Length = 1744

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 190 gtaaagaaatatgcaatggaacaagcattcaagtcaatgatg 231
           |||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 400 gtaaagaaatatgcaatgcaacaagctttcaagtccatgatg 441



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>gb|AC011388.7| Homo sapiens chromosome 5 clone CTB-171P15, complete sequence
          Length = 73201

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 192   aaagaaatatgcaatggaacaa 213
             ||||||||||||||||||||||
Sbjct: 19305 aaagaaatatgcaatggaacaa 19326



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>emb|AL162398.34| Human DNA sequence from clone RP11-29E9 on chromosome 1, complete
             sequence
          Length = 32932

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 448   tttgcctttgttgatgtttct 468
             |||||||||||||||||||||
Sbjct: 10195 tttgcctttgttgatgtttct 10215



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 477    gttgcaaaaacagaaggagcttcaa 501
              |||| ||||||||||||||||||||
Sbjct: 520151 gttgaaaaaacagaaggagcttcaa 520127



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>emb|AL133225.2|SPAC25B8 S.pombe chromosome I cosmid c25B8
          Length = 39617

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 662   ttgatacaattgagaaaatga 682
             |||||||||||||||||||||
Sbjct: 30558 ttgatacaattgagaaaatga 30538



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>gb|DQ374087.1| Beta vulgaris chromosome 9 clone BAC33 genomic sequence
          Length = 99090

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 191   taaagaaatatgcaatggaacaagc 215
             |||||||||||||| ||||||||||
Sbjct: 77252 taaagaaatatgcactggaacaagc 77276



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>gb|AC073427.7| Homo sapiens BAC clone RP11-746K19 from 4, complete sequence
          Length = 157152

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    aatgatgacccaggcaccacc 245
              |||||||||||||||||||||
Sbjct: 145194 aatgatgacccaggcaccacc 145174



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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 366    tgatgtttcagctagtgatgt 386
              |||||||||||||||||||||
Sbjct: 645572 tgatgtttcagctagtgatgt 645592



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 655    ctatctattgatacaattga 674
              ||||||||||||||||||||
Sbjct: 687160 ctatctattgatacaattga 687179



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>ref|NM_193791.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1758

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  aggttccacggcaccaagta 316
            ||||||||||||||||||||
Sbjct: 1452 aggttccacggcaccaagta 1433



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>gb|AF131215.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-306G11, complete
              sequence; and clones CTC-493P15, CTB-91N18, CTC-164D9,
              partial sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 579    tacaaatggtgctgctttta 598
              ||||||||||||||||||||
Sbjct: 148465 tacaaatggtgctgctttta 148484



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>emb|Z81538.1|CEF45H10 Caenorhabditis elegans Cosmid F45H10, complete sequence
          Length = 19104

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   aacacatttggtgcgaactc 266
             ||||||||||||||||||||
Sbjct: 14894 aacacatttggtgcgaactc 14875



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>emb|AL359750.16| Human DNA sequence from clone RP11-24A10 on chromosome 13, complete
            sequence
          Length = 8538

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 625  acaactgaatccagtaagtcagga 648
            |||| |||||||||||||||||||
Sbjct: 2586 acaagtgaatccagtaagtcagga 2609



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>gb|AC128681.6| Homo sapiens 12 BAC RP11-65M12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 60492

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 429   atctaagccttcaaagaaatttgc 452
             ||||||||| ||||||||||||||
Sbjct: 38513 atctaagccatcaaagaaatttgc 38536



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>emb|BX571874.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              16/17
          Length = 349907

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    ttctggattggcattggtgt 152
              ||||||||||||||||||||
Sbjct: 337634 ttctggattggcattggtgt 337615



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>emb|AL133315.1|ATT8P19 Arabidopsis thaliana DNA chromosome 3, BAC clone T8P19
          Length = 96679

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 354   aggtgcaactgttgatgtttcagctagtgatg 385
             ||||| ||| |||||||||||| |||||||||
Sbjct: 16654 aggtggaacagttgatgtttcatctagtgatg 16623



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>ref|XM_624461.1| PREDICTED: Apis mellifera similar to ENSANGP00000012399
           (LOC552083), mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 191 taaagaaatatgcaatggaacaag 214
           |||| |||||||||||||||||||
Sbjct: 158 taaaaaaatatgcaatggaacaag 181



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 297      aggttccacggcaccaagta 316
                ||||||||||||||||||||
Sbjct: 18188377 aggttccacggcaccaagta 18188358



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>gb|AC007462.3| Homo sapiens BAC clone RP11-85C4 from 2, complete sequence
          Length = 163464

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 478    ttgcaaaaacagaaggagct 497
              ||||||||||||||||||||
Sbjct: 147691 ttgcaaaaacagaaggagct 147672



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>gb|AC100809.9| Homo sapiens chromosome 8, clone CTC-493P15, complete sequence
          Length = 184851

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 579    tacaaatggtgctgctttta 598
              ||||||||||||||||||||
Sbjct: 110172 tacaaatggtgctgctttta 110153



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>dbj|AP003202.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1075D06
          Length = 130528

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   aggttccacggcaccaagta 316
             ||||||||||||||||||||
Sbjct: 39822 aggttccacggcaccaagta 39803



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>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22
          Length = 82035

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 663   tgatacaattgagaaaatga 682
             ||||||||||||||||||||
Sbjct: 54233 tgatacaattgagaaaatga 54252



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>dbj|AK119316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-H05, full
            insert sequence
          Length = 2536

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  aggttccacggcaccaagta 316
            ||||||||||||||||||||
Sbjct: 1938 aggttccacggcaccaagta 1919



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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 186     gatggtaaagaaatatgcaa 205
               ||||||||||||||||||||
Sbjct: 3687177 gatggtaaagaaatatgcaa 3687158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,283,383
Number of Sequences: 3902068
Number of extensions: 6283383
Number of successful extensions: 120382
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120133
Number of HSP's gapped (non-prelim): 235
length of query: 687
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 664
effective length of database: 17,143,297,704
effective search space: 11383149675456
effective search space used: 11383149675456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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