Clone Name | bags9i24 |
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Clone Library Name | barley_pub |
>dbj|AK098870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A22, full insert sequence Length = 1728 Score = 270 bits (136), Expect = 6e-69 Identities = 297/350 (84%), Gaps = 3/350 (0%) Strand = Plus / Plus Query: 76 ggaactggtaccctgcctcccatgccgcccccctcatcatatattggttcacctgttttc 135 ||||| ||| |||| ||||||||||| ||||| || ||||| || ||||| ||||||||| Sbjct: 302 ggaacgggttccctacctcccatgccacccccatcgtcatacatcggttcgcctgttttc 361 Query: 136 tggattggcattggtgtagcattgtccgcggcattttccatggtctcttcgatggtaaag 195 |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 362 tggattggagttggtgtagcattgtccgcagcattttctatggtctcttcgatggtaaag 421 Query: 196 aaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacattt 255 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 422 aaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactttt 481 Query: 256 ggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaagt 315 || | |||||||| |||||||| |||||||||||||||||| | | | || || || Sbjct: 482 ggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctcctagc 541 Query: 316 agttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttgatgtt 372 ||||| ||||||||| ||||||||| ||| | || || ||||||||| |||||| Sbjct: 542 agttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatgtt 601 Query: 373 tcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422 ||||||| | | |||| |||||||||| ||| ||||| || |||||||| Sbjct: 602 tcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 651 Score = 119 bits (60), Expect = 1e-23 Identities = 200/246 (81%), Gaps = 3/246 (1%) Strand = Plus / Plus Query: 442 aagaaatttgcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaa 501 |||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||| Sbjct: 665 aagaaatttgcctttgttgacgtttctcctgaagagttgcagcaa---aaggaacttcaa 721 Query: 502 tcttcattggagacagtagatataagaagtgatagcactgggagtgaaacgaaggatgat 561 |||||| |||||||||| ||| ||| |||||| || | ||||||||| | ||| ||| Sbjct: 722 tcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggat 781 Query: 562 tccgaacaacaagttcctacaaatggtgctgcttttaagccaagtgaagattcctctacc 621 | || ||| ||| ||| |||||||| ||||||||||| | ||||| ||| ||| | Sbjct: 782 actgagcaaaaagctccaacaaatggaactgcttttaagatgaatgaaggttctgctagc 841 Query: 622 tggacaactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatg 681 ||||||||||||| || || ||||| |||||| | || |||||||||||||||||||| Sbjct: 842 gggacaactgaatctagcaattcagggcctatgttgtccgttgatacaattgagaaaatg 901 Query: 682 atggaa 687 |||||| Sbjct: 902 atggaa 907
>dbj|AK065119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O14, full insert sequence Length = 1938 Score = 268 bits (135), Expect = 2e-68 Identities = 287/337 (85%), Gaps = 3/337 (0%) Strand = Plus / Plus Query: 76 ggaactggtaccctgcctcccatgccgcccccctcatcatatattggttcacctgttttc 135 ||||| ||| |||| ||||||||||| ||||| || ||||| || ||||| ||||||||| Sbjct: 392 ggaacgggttccctacctcccatgccacccccatcgtcatacatcggttcgcctgttttc 451 Query: 136 tggattggcattggtgtagcattgtccgcggcattttccatggtctcttcgatggtaaag 195 |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 452 tggattggagttggtgtagcattgtccgcagcattttctatggtctcttcgatggtaaag 511 Query: 196 aaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacattt 255 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 512 aaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactttt 571 Query: 256 ggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaagt 315 || | |||||||| |||||||| |||||||||||||||||| | | | || || || Sbjct: 572 ggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctcctagc 631 Query: 316 agttatccatactcagggccaaggaaaaatacg---ccaaaaggtgcaactgttgatgtt 372 ||||| ||||||||| ||||||||| |||| || || ||||||||| |||||| Sbjct: 632 agttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatgtt 691 Query: 373 tcagctagtgatgtggcagcaactggatcttcggaag 409 ||||||| | | |||| |||||||||| ||| ||||| Sbjct: 692 tcagctactaaagtggaagcaactggaactttggaag 728 Score = 111 bits (56), Expect = 3e-21 Identities = 199/246 (80%), Gaps = 3/246 (1%) Strand = Plus / Plus Query: 442 aagaaatttgcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaa 501 |||||||||||||||||||| |||||||| |||||||||| | || ||||| |||||| Sbjct: 755 aagaaatttgcctttgttgacgtttctcctgaagagttgc---agcaaaaggaacttcaa 811 Query: 502 tcttcattggagacagtagatataagaagtgatagcactgggagtgaaacgaaggatgat 561 |||||| |||||||||| ||| ||| |||||| || | ||||||||| | ||| ||| Sbjct: 812 tcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggat 871 Query: 562 tccgaacaacaagttcctacaaatggtgctgcttttaagccaagtgaagattcctctacc 621 | || ||| ||| ||| |||||||| ||||||||||| | ||||| ||| ||| | Sbjct: 872 actgagcaaaaagctccaacaaatggaactgcttttaagatgaatgaaggttctgctagc 931 Query: 622 tggacaactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatg 681 ||||||||||||| || || ||||| |||||| | || ||||||||||||||||| || Sbjct: 932 gggacaactgaatctagcaattcagggcctatgttgtccgttgatacaattgagaaagtg 991 Query: 682 atggaa 687 |||||| Sbjct: 992 atggaa 997
>dbj|AK062578.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H07, full insert sequence Length = 1764 Score = 262 bits (132), Expect = 1e-66 Identities = 296/350 (84%), Gaps = 3/350 (0%) Strand = Plus / Plus Query: 76 ggaactggtaccctgcctcccatgccgcccccctcatcatatattggttcacctgttttc 135 ||||| ||| |||| ||||||||||| ||||| || ||||| || ||||| ||||||||| Sbjct: 338 ggaacgggttccctacctcccatgccacccccatcgtcatacatcggttcgcctgttttc 397 Query: 136 tggattggcattggtgtagcattgtccgcggcattttccatggtctcttcgatggtaaag 195 |||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||| Sbjct: 398 tggattggagttggtgtagcattgtccgcagcattttctatggtctctccgatggtaaag 457 Query: 196 aaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacattt 255 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 458 aaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactttt 517 Query: 256 ggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaagt 315 || | |||||||| |||||||| |||||||||||||||||| | | | || || || Sbjct: 518 ggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctcctagc 577 Query: 316 agttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttgatgtt 372 ||||| ||||||||| ||||||||| ||| | || || ||||||||| |||||| Sbjct: 578 agttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatgtt 637 Query: 373 tcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422 ||||||| | | |||| |||||||||| ||| ||||| || |||||||| Sbjct: 638 tcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 687 Score = 119 bits (60), Expect = 1e-23 Identities = 200/246 (81%), Gaps = 3/246 (1%) Strand = Plus / Plus Query: 442 aagaaatttgcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaa 501 |||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||| Sbjct: 701 aagaaatttgcctttgttgacgtttctcctgaagagttgcagcaa---aaggaacttcaa 757 Query: 502 tcttcattggagacagtagatataagaagtgatagcactgggagtgaaacgaaggatgat 561 |||||| |||||||||| ||| ||| |||||| || | ||||||||| | ||| ||| Sbjct: 758 tcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggat 817 Query: 562 tccgaacaacaagttcctacaaatggtgctgcttttaagccaagtgaagattcctctacc 621 | || ||| ||| ||| |||||||| ||||||||||| | ||||| ||| ||| | Sbjct: 818 actgagcaaaaagctccaacaaatggaactgcttttaagatgaatgaaggttctgctagc 877 Query: 622 tggacaactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatg 681 ||||||||||||| || || ||||| |||||| | || |||||||||||||||||||| Sbjct: 878 gggacaactgaatctagcaattcagggcctatgttgtccgttgatacaattgagaaaatg 937 Query: 682 atggaa 687 |||||| Sbjct: 938 atggaa 943
>gb|BT018512.1| Zea mays clone EL01N0430B11.d mRNA sequence Length = 1805 Score = 210 bits (106), Expect = 4e-51 Identities = 190/218 (87%) Strand = Plus / Plus Query: 78 aactggtaccctgcctcccatgccgcccccctcatcatatattggttcacctgttttctg 137 |||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| Sbjct: 331 aactggcaccctgcctcccatgcctcccccatcatcatacattggttcgcctgttttctg 390 Query: 138 gattggcattggtgtagcattgtccgcggcattttccatggtctcttcgatggtaaagaa 197 |||||| |||||| ||||||||| | ||| ||| ||| || ||||| ||| ||||||| Sbjct: 391 gattggagttggtggagcattgtctggggcgtttaccacgggttcttccatgctaaagaa 450 Query: 198 atatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacatttgg 257 |||||| |||||||||||||| ||||||||||||||||| |||||||||||| ||||||| Sbjct: 451 atatgccatggaacaagcatttaagtcaatgatgacccaagcaccaccaaactcatttgg 510 Query: 258 tgcgaactcgccattcccattctccatgccaccacagg 295 | |||||||| |||||||| |||||||||||||| Sbjct: 511 gtccaactcgcctttcccatttggcatgccaccacagg 548 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 626 caactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatgatgg 685 |||||||||||||| | |||||||||||||||||| |||| ||||||||||| ||||||| Sbjct: 879 caactgaatccagtcaatcaggacctatgctatctgttgagacaattgagaagatgatgg 938 Query: 686 aa 687 || Sbjct: 939 aa 940 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 436 ccttcaaagaaatttgcctttgttgatgtttctcccgaagagttgca 482 ||||| ||||| ||||| ||||||||||||||||||||||| ||||| Sbjct: 692 ccttctaagaattttgcatttgttgatgtttctcccgaagatttgca 738
>ref|XM_472609.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1131 Score = 145 bits (73), Expect = 2e-31 Identities = 195/235 (82%), Gaps = 3/235 (1%) Strand = Plus / Plus Query: 191 taaagaaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaaca 250 ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct: 308 taaagaaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaaca 367 Query: 251 catttggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcac 310 | ||||| | |||||||| |||||||| |||||||||||||||||| | | | || | Sbjct: 368 cttttggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctc 427 Query: 311 caagtagttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttg 367 | || ||||| ||||||||| ||||||||| ||| | || || ||||||||| | Sbjct: 428 ctagcagttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcg 487 Query: 368 atgtttcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422 |||||||||||| | | |||| |||||||||| ||| ||||| || |||||||| Sbjct: 488 atgtttcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 542 Score = 119 bits (60), Expect = 1e-23 Identities = 200/246 (81%), Gaps = 3/246 (1%) Strand = Plus / Plus Query: 442 aagaaatttgcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaa 501 |||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||| Sbjct: 556 aagaaatttgcctttgttgacgtttctcctgaagagttgcagcaa---aaggaacttcaa 612 Query: 502 tcttcattggagacagtagatataagaagtgatagcactgggagtgaaacgaaggatgat 561 |||||| |||||||||| ||| ||| |||||| || | ||||||||| | ||| ||| Sbjct: 613 tcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggat 672 Query: 562 tccgaacaacaagttcctacaaatggtgctgcttttaagccaagtgaagattcctctacc 621 | || ||| ||| ||| |||||||| ||||||||||| | ||||| ||| ||| | Sbjct: 673 actgagcaaaaagctccaacaaatggaactgcttttaagatgaatgaaggttctgctagc 732 Query: 622 tggacaactgaatccagtaagtcaggacctatgctatctattgatacaattgagaaaatg 681 ||||||||||||| || || ||||| |||||| | || |||||||||||||||||||| Sbjct: 733 gggacaactgaatctagcaattcagggcctatgttgtccgttgatacaattgagaaaatg 792 Query: 682 atggaa 687 |||||| Sbjct: 793 atggaa 798
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 139 bits (70), Expect = 1e-29 Identities = 192/232 (82%), Gaps = 3/232 (1%) Strand = Plus / Minus Query: 194 agaaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacat 253 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 21898688 agaaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactt 21898629 Query: 254 ttggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaa 313 |||| | |||||||| |||||||| |||||||||||||||||| | | | || || | Sbjct: 21898628 ttggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctccta 21898569 Query: 314 gtagttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttgatg 370 | ||||| ||||||||| ||||||||| ||| | || || ||||||||| |||| Sbjct: 21898568 gcagttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatg 21898509 Query: 371 tttcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422 ||||||||| | | |||| |||||||||| ||| ||||| || |||||||| Sbjct: 21898508 tttcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 21898457 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 121 ggttcacctgttttctggattggcattggtgtagcattgtccgcggcattttccatggt 179 ||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct: 21900157 ggttcgcctgttttctggattggagttggtgtagcattgtccgcagcattttctatggt 21900099 Score = 65.9 bits (33), Expect = 2e-07 Identities = 71/83 (85%), Gaps = 3/83 (3%) Strand = Plus / Minus Query: 451 gcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaatcttcattg 510 ||||||||||| |||||||| |||||||||| | || ||||| |||||||||||| || Sbjct: 21898295 gcctttgttgacgtttctcctgaagagttgc---agcaaaaggaacttcaatcttcactg 21898239 Query: 511 gagacagtagatataagaagtga 533 |||||||| ||| ||| |||||| Sbjct: 21898238 gagacagtggatgtaaaaagtga 21898216 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 662 ttgatacaattgagaaaatgatggaa 687 |||||||||||||||||||||||||| Sbjct: 21897892 ttgatacaattgagaaaatgatggaa 21897867
>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01, complete sequence Length = 127713 Score = 139 bits (70), Expect = 1e-29 Identities = 192/232 (82%), Gaps = 3/232 (1%) Strand = Plus / Minus Query: 194 agaaatatgcaatggaacaagcattcaagtcaatgatgacccaggcaccaccaaacacat 253 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 83389 agaaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacactt 83330 Query: 254 ttggtgcgaactcgccattcccattctccatgccaccacaggcaggttccacggcaccaa 313 |||| | |||||||| |||||||| |||||||||||||||||| | | | || || | Sbjct: 83329 ttggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctccta 83270 Query: 314 gtagttatccatactcagggccaaggaaaaata---cgccaaaaggtgcaactgttgatg 370 | ||||| ||||||||| ||||||||| ||| | || || ||||||||| |||| Sbjct: 83269 gcagttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatg 83210 Query: 371 tttcagctagtgatgtggcagcaactggatcttcggaagcagccgatgtggc 422 ||||||||| | | |||| |||||||||| ||| ||||| || |||||||| Sbjct: 83209 tttcagctactaaagtggaagcaactggaactttggaagaggctgatgtggc 83158 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 121 ggttcacctgttttctggattggcattggtgtagcattgtccgcggcattttccatggt 179 ||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct: 84858 ggttcgcctgttttctggattggagttggtgtagcattgtccgcagcattttctatggt 84800 Score = 65.9 bits (33), Expect = 2e-07 Identities = 71/83 (85%), Gaps = 3/83 (3%) Strand = Plus / Minus Query: 451 gcctttgttgatgtttctcccgaagagttgcaaaaacagaaggagcttcaatcttcattg 510 ||||||||||| |||||||| |||||||||| | || ||||| |||||||||||| || Sbjct: 82996 gcctttgttgacgtttctcctgaagagttgc---agcaaaaggaacttcaatcttcactg 82940 Query: 511 gagacagtagatataagaagtga 533 |||||||| ||| ||| |||||| Sbjct: 82939 gagacagtggatgtaaaaagtga 82917 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 662 ttgatacaattgagaaaatgatggaa 687 |||||||||||||||||||||||||| Sbjct: 82593 ttgatacaattgagaaaatgatggaa 82568
>gb|AY157668.1| Pisum sativum chloroplast protein translocon component Tic40 precursor (Tic40) mRNA, complete cds; nuclear gene for chloroplast product Length = 1311 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 190 gtaaagaaatatgcaatggaacaagcattcaagtcaatgatg 231 |||||||||||||||||| ||||||| |||||||| |||||| Sbjct: 367 gtaaagaaatatgcaatgcaacaagctttcaagtccatgatg 408
>emb|AJ243758.1|PSA243758 Pisum sativum mRNA for chloroplastic inner envelope protein translocon (Tic40 gene) Length = 1744 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 190 gtaaagaaatatgcaatggaacaagcattcaagtcaatgatg 231 |||||||||||||||||| ||||||| |||||||| |||||| Sbjct: 400 gtaaagaaatatgcaatgcaacaagctttcaagtccatgatg 441
>gb|AC011388.7| Homo sapiens chromosome 5 clone CTB-171P15, complete sequence Length = 73201 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 aaagaaatatgcaatggaacaa 213 |||||||||||||||||||||| Sbjct: 19305 aaagaaatatgcaatggaacaa 19326
>emb|AL162398.34| Human DNA sequence from clone RP11-29E9 on chromosome 1, complete sequence Length = 32932 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 tttgcctttgttgatgtttct 468 ||||||||||||||||||||| Sbjct: 10195 tttgcctttgttgatgtttct 10215
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 477 gttgcaaaaacagaaggagcttcaa 501 |||| |||||||||||||||||||| Sbjct: 520151 gttgaaaaaacagaaggagcttcaa 520127
>emb|AL133225.2|SPAC25B8 S.pombe chromosome I cosmid c25B8 Length = 39617 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 662 ttgatacaattgagaaaatga 682 ||||||||||||||||||||| Sbjct: 30558 ttgatacaattgagaaaatga 30538
>gb|DQ374087.1| Beta vulgaris chromosome 9 clone BAC33 genomic sequence Length = 99090 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 191 taaagaaatatgcaatggaacaagc 215 |||||||||||||| |||||||||| Sbjct: 77252 taaagaaatatgcactggaacaagc 77276
>gb|AC073427.7| Homo sapiens BAC clone RP11-746K19 from 4, complete sequence Length = 157152 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 aatgatgacccaggcaccacc 245 ||||||||||||||||||||| Sbjct: 145194 aatgatgacccaggcaccacc 145174
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 tgatgtttcagctagtgatgt 386 ||||||||||||||||||||| Sbjct: 645572 tgatgtttcagctagtgatgt 645592 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 ctatctattgatacaattga 674 |||||||||||||||||||| Sbjct: 687160 ctatctattgatacaattga 687179
>ref|NM_193791.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1758 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aggttccacggcaccaagta 316 |||||||||||||||||||| Sbjct: 1452 aggttccacggcaccaagta 1433
>gb|AF131215.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-306G11, complete sequence; and clones CTC-493P15, CTB-91N18, CTC-164D9, partial sequence Length = 186607 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 tacaaatggtgctgctttta 598 |||||||||||||||||||| Sbjct: 148465 tacaaatggtgctgctttta 148484
>emb|Z81538.1|CEF45H10 Caenorhabditis elegans Cosmid F45H10, complete sequence Length = 19104 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aacacatttggtgcgaactc 266 |||||||||||||||||||| Sbjct: 14894 aacacatttggtgcgaactc 14875
>emb|AL359750.16| Human DNA sequence from clone RP11-24A10 on chromosome 13, complete sequence Length = 8538 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 625 acaactgaatccagtaagtcagga 648 |||| ||||||||||||||||||| Sbjct: 2586 acaagtgaatccagtaagtcagga 2609
>gb|AC128681.6| Homo sapiens 12 BAC RP11-65M12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 60492 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 429 atctaagccttcaaagaaatttgc 452 ||||||||| |||||||||||||| Sbjct: 38513 atctaagccatcaaagaaatttgc 38536
>emb|BX571874.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 16/17 Length = 349907 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttctggattggcattggtgt 152 |||||||||||||||||||| Sbjct: 337634 ttctggattggcattggtgt 337615
>emb|AL133315.1|ATT8P19 Arabidopsis thaliana DNA chromosome 3, BAC clone T8P19 Length = 96679 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 354 aggtgcaactgttgatgtttcagctagtgatg 385 ||||| ||| |||||||||||| ||||||||| Sbjct: 16654 aggtggaacagttgatgtttcatctagtgatg 16623
>ref|XM_624461.1| PREDICTED: Apis mellifera similar to ENSANGP00000012399 (LOC552083), mRNA Length = 1059 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 taaagaaatatgcaatggaacaag 214 |||| ||||||||||||||||||| Sbjct: 158 taaaaaaatatgcaatggaacaag 181
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aggttccacggcaccaagta 316 |||||||||||||||||||| Sbjct: 18188377 aggttccacggcaccaagta 18188358
>gb|AC007462.3| Homo sapiens BAC clone RP11-85C4 from 2, complete sequence Length = 163464 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 ttgcaaaaacagaaggagct 497 |||||||||||||||||||| Sbjct: 147691 ttgcaaaaacagaaggagct 147672
>gb|AC100809.9| Homo sapiens chromosome 8, clone CTC-493P15, complete sequence Length = 184851 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 tacaaatggtgctgctttta 598 |||||||||||||||||||| Sbjct: 110172 tacaaatggtgctgctttta 110153
>dbj|AP003202.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1075D06 Length = 130528 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aggttccacggcaccaagta 316 |||||||||||||||||||| Sbjct: 39822 aggttccacggcaccaagta 39803
>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22 Length = 82035 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 663 tgatacaattgagaaaatga 682 |||||||||||||||||||| Sbjct: 54233 tgatacaattgagaaaatga 54252
>dbj|AK119316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-H05, full insert sequence Length = 2536 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aggttccacggcaccaagta 316 |||||||||||||||||||| Sbjct: 1938 aggttccacggcaccaagta 1919
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gatggtaaagaaatatgcaa 205 |||||||||||||||||||| Sbjct: 3687177 gatggtaaagaaatatgcaa 3687158 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,283,383 Number of Sequences: 3902068 Number of extensions: 6283383 Number of successful extensions: 120382 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120133 Number of HSP's gapped (non-prelim): 235 length of query: 687 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 664 effective length of database: 17,143,297,704 effective search space: 11383149675456 effective search space used: 11383149675456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)