ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9i19 |
|---|---|
| Clone Library Name | barley_pub |
>XYLA_HORVU (Q40082) Xylose isomerase (EC 5.3.1.5)| Length = 479 Score = 62.0 bits (149), Expect = 5e-10 Identities = 27/28 (96%), Positives = 27/28 (96%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ETNIKPLWGTAQLFMHPR MHGAATSPE Sbjct: 175 ETNIKPLWGTAQLFMHPRYMHGAATSPE 202
>XYLA_ARATH (Q9FKK7) Xylose isomerase (EC 5.3.1.5)| Length = 472 Score = 50.4 bits (119), Expect = 1e-06 Identities = 21/27 (77%), Positives = 23/27 (85%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATSPE 86 + IKPLWGTAQLF+HPR MHG ATS E Sbjct: 174 SKIKPLWGTAQLFLHPRYMHGGATSSE 200
>XYLA_THENE (P45687) Xylose isomerase (EC 5.3.1.5)| Length = 444 Score = 45.1 bits (105), Expect = 6e-05 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATS 80 ++N+K LWGTA LF HPR MHGAAT+ Sbjct: 132 DSNVKLLWGTANLFSHPRYMHGAATT 157
>XYLA_THEMA (Q9X1Z5) Xylose isomerase (EC 5.3.1.5)| Length = 444 Score = 45.1 bits (105), Expect = 6e-05 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATS 80 ++N+K LWGTA LF HPR MHGAAT+ Sbjct: 132 DSNVKLLWGTANLFSHPRYMHGAATT 157
>XYLA1_XANAC (Q8PLL9) Xylose isomerase 1 (EC 5.3.1.5)| Length = 441 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/28 (64%), Positives = 23/28 (82%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 +T IK LWGTA LF HPR M+GA+T+P+ Sbjct: 136 DTGIKLLWGTANLFSHPRYMNGASTNPD 163
>XYLA2_XANAC (Q8PEW5) Xylose isomerase 2 (EC 5.3.1.5)| Length = 445 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/28 (64%), Positives = 23/28 (82%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 +T IK LWGTA LF HPR M+GA+T+P+ Sbjct: 140 DTGIKLLWGTANLFSHPRYMNGASTNPD 167
>XYLA2_XANCP (Q8P3H1) Xylose isomerase 2 (EC 5.3.1.5)| Length = 446 Score = 43.9 bits (102), Expect = 1e-04 Identities = 17/28 (60%), Positives = 23/28 (82%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 +T +K LWGTA LF HPR M+GA+T+P+ Sbjct: 140 DTGVKLLWGTANLFSHPRYMNGASTNPD 167
>XYLA1_XANCP (Q8P9T9) Xylose isomerase 1 (EC 5.3.1.5)| Length = 446 Score = 43.9 bits (102), Expect = 1e-04 Identities = 17/28 (60%), Positives = 23/28 (82%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 +T +K LWGTA LF HPR M+GA+T+P+ Sbjct: 140 DTGVKLLWGTANLFSHPRYMNGASTNPD 167
>XYLA_FERGO (Q6T6K9) Xylose isomerase (EC 5.3.1.5)| Length = 433 Score = 42.7 bits (99), Expect = 3e-04 Identities = 18/26 (69%), Positives = 20/26 (76%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATSP 83 +N+K LWGTA LF HPR GAATSP Sbjct: 129 SNVKLLWGTANLFSHPRYAQGAATSP 154
>XYLA_BACTN (Q8A9M2) Xylose isomerase (EC 5.3.1.5)| Length = 438 Score = 41.6 bits (96), Expect = 6e-04 Identities = 18/28 (64%), Positives = 22/28 (78%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ET IK LWGTA +F H R M+GAAT+P+ Sbjct: 134 ETGIKLLWGTANVFGHARYMNGAATNPD 161
>XYLA_RHOBA (Q7UVG2) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 41.2 bits (95), Expect = 8e-04 Identities = 17/25 (68%), Positives = 20/25 (80%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATS 80 T +K LWGTA +F +PR MHGAATS Sbjct: 132 TGVKLLWGTANMFSNPRFMHGAATS 156
>XYLA_RHILO (Q98CR8) Xylose isomerase (EC 5.3.1.5)| Length = 441 Score = 40.8 bits (94), Expect = 0.001 Identities = 17/28 (60%), Positives = 21/28 (75%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 +T +K LWGTA LF H R M GAAT+P+ Sbjct: 136 QTGVKLLWGTANLFSHRRFMSGAATNPD 163
>XYLA_THEYO (Q9KGU2) Xylose isomerase (EC 5.3.1.5)| Length = 438 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/22 (77%), Positives = 18/22 (81%) Frame = +3 Query: 15 KPLWGTAQLFMHPRXMHGAATS 80 K LWGTA LF HPR +HGAATS Sbjct: 135 KVLWGTANLFSHPRYVHGAATS 156
>XYLA_RUMFL (Q9S306) Xylose isomerase (EC 5.3.1.5)| Length = 438 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/23 (73%), Positives = 18/23 (78%) Frame = +3 Query: 15 KPLWGTAQLFMHPRXMHGAATSP 83 K LWGTA+ F HPR MHGA TSP Sbjct: 133 KCLWGTAKCFDHPRFMHGAGTSP 155
>XYLA_HAEIN (P44398) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 40.0 bits (92), Expect = 0.002 Identities = 17/27 (62%), Positives = 20/27 (74%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSP 83 ET +K LWGTA F +PR M GAAT+P Sbjct: 132 ETGVKLLWGTANCFTNPRYMSGAATNP 158
>XYLA_PHOLL (Q7N4P7) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ET +K LWGTA F HPR GA+T+P+ Sbjct: 132 ETGVKLLWGTANCFTHPRYAAGASTNPD 159
>XYLA_BACHD (Q9K993) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = +3 Query: 15 KPLWGTAQLFMHPRXMHGAATSP 83 K LW TA +F HPR +HGAATSP Sbjct: 134 KLLWNTANMFTHPRWIHGAATSP 156
>XYLA_RHIME (Q92LW9) Xylose isomerase (EC 5.3.1.5)| Length = 436 Score = 38.9 bits (89), Expect = 0.004 Identities = 17/28 (60%), Positives = 21/28 (75%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ET +K LWGTA LF + R M GAAT+P+ Sbjct: 131 ETGVKLLWGTANLFSNRRFMAGAATNPD 158
>XYLA_PHOPR (Q6LUY7) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 38.9 bits (89), Expect = 0.004 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ET +K LWGTA F +PR M GA T+P+ Sbjct: 132 ETGLKLLWGTANAFSNPRYMSGAGTNPD 159
>XYLA_AGRT5 (Q8U7G6) Xylose isomerase (EC 5.3.1.5)| Length = 436 Score = 38.1 bits (87), Expect = 0.007 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 +T +K LWGTA LF + R M GAAT+P+ Sbjct: 131 DTGVKLLWGTANLFSNRRFMSGAATNPD 158
>XYLA_BRUSU (Q8G204) Xylose isomerase (EC 5.3.1.5)| Length = 435 Score = 38.1 bits (87), Expect = 0.007 Identities = 17/28 (60%), Positives = 21/28 (75%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ET +K LWGTA LF + R M GAAT+P+ Sbjct: 131 ETGMKLLWGTANLFSNRRYMAGAATNPD 158
>XYLA_BRUME (Q8YFX5) Xylose isomerase (EC 5.3.1.5)| Length = 435 Score = 38.1 bits (87), Expect = 0.007 Identities = 17/28 (60%), Positives = 21/28 (75%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ET +K LWGTA LF + R M GAAT+P+ Sbjct: 131 ETGMKLLWGTANLFSNRRYMAGAATNPD 158
>XYLA_BACME (O08325) Xylose isomerase (EC 5.3.1.5)| Length = 445 Score = 38.1 bits (87), Expect = 0.007 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATS 80 +N+K LW TA +F +PR +HGAATS Sbjct: 139 SNVKLLWNTANMFTNPRFVHGAATS 163
>XYLA_BACC1 (Q739D2) Xylose isomerase (EC 5.3.1.5)| Length = 445 Score = 38.1 bits (87), Expect = 0.007 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATS 80 +N+K LW TA +F +PR +HGAATS Sbjct: 139 SNVKLLWNTANMFTNPRFVHGAATS 163
>XYLA_BACSW (P54272) Xylose isomerase (EC 5.3.1.5)| Length = 441 Score = 37.7 bits (86), Expect = 0.009 Identities = 16/22 (72%), Positives = 17/22 (77%) Frame = +3 Query: 15 KPLWGTAQLFMHPRXMHGAATS 80 K LW TA LF HPR +HGAATS Sbjct: 134 KLLWNTANLFTHPRFVHGAATS 155
>XYLA_BACST (P54273) Xylose isomerase (EC 5.3.1.5)| Length = 441 Score = 37.7 bits (86), Expect = 0.009 Identities = 16/22 (72%), Positives = 17/22 (77%) Frame = +3 Query: 15 KPLWGTAQLFMHPRXMHGAATS 80 K LW TA LF HPR +HGAATS Sbjct: 134 KLLWNTANLFTHPRFVHGAATS 155
>XYLA_THEET (P22842) Xylose isomerase (EC 5.3.1.5)| Length = 438 Score = 37.7 bits (86), Expect = 0.009 Identities = 16/22 (72%), Positives = 18/22 (81%) Frame = +3 Query: 15 KPLWGTAQLFMHPRXMHGAATS 80 K LWGTA LF +PR +HGAATS Sbjct: 135 KVLWGTANLFSNPRFVHGAATS 156
>XYLA_BACLD (P77832) Xylose isomerase (EC 5.3.1.5)| Length = 448 Score = 37.4 bits (85), Expect = 0.012 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATS 80 ++++ LW TA +F HPR +HGAATS Sbjct: 131 SHVQLLWNTANMFTHPRYVHGAATS 155
>XYLA_BRAJA (Q89VC7) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 36.6 bits (83), Expect = 0.021 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = +3 Query: 12 IKPLWGTAQLFMHPRXMHGAATSPE 86 ++ LWGTA LF H R M GAAT+P+ Sbjct: 138 VRLLWGTANLFTHRRYMAGAATNPD 162
>XYLA_YERPE (Q8Z9Z1) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 36.6 bits (83), Expect = 0.021 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATSPE 86 + +K LWGTA F HPR GAAT+P+ Sbjct: 133 SGVKLLWGTANCFTHPRYGAGAATNPD 159
>XYLA_THETU (P19148) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 36.6 bits (83), Expect = 0.021 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = +3 Query: 15 KPLWGTAQLFMHPRXMHGAATS 80 K LWGTA LF +PR +HGA+TS Sbjct: 136 KVLWGTANLFSNPRFVHGASTS 157
>XYLA_THESA (P30435) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 36.6 bits (83), Expect = 0.021 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = +3 Query: 15 KPLWGTAQLFMHPRXMHGAATS 80 K LWGTA LF +PR +HGA+TS Sbjct: 136 KVLWGTANLFSNPRFVHGASTS 157
>XYLA_CLOTS (P29441) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 36.6 bits (83), Expect = 0.021 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = +3 Query: 15 KPLWGTAQLFMHPRXMHGAATS 80 K LWGTA LF +PR +HGA+TS Sbjct: 136 KVLWGTANLFSNPRFVHGASTS 157
>XYLA_LACPE (P21938) Xylose isomerase (EC 5.3.1.5)| Length = 449 Score = 36.2 bits (82), Expect = 0.027 Identities = 14/28 (50%), Positives = 21/28 (75%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 +T +K LW T+ +F +PR + GAATSP+ Sbjct: 134 QTGMKVLWNTSNMFTNPRFVAGAATSPD 161
>XYLA_BIFLO (Q8G3Q1) Xylose isomerase (EC 5.3.1.5)| Length = 449 Score = 36.2 bits (82), Expect = 0.027 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATSP 83 T +K LW T+ LF +PR + GAATSP Sbjct: 133 TGVKLLWNTSSLFTNPRFVSGAATSP 158
>XYLA_ECOLI (P00944) Xylose isomerase (EC 5.3.1.5) (D-xylulose keto-isomerase)| Length = 440 Score = 35.8 bits (81), Expect = 0.035 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 E+ +K LWGTA F +PR GAAT+P+ Sbjct: 132 ESGVKLLWGTANCFTNPRYGAGAATNPD 159
>XYLA_ECOL6 (Q8FCE3) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 35.8 bits (81), Expect = 0.035 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 E+ +K LWGTA F +PR GAAT+P+ Sbjct: 132 ESGVKLLWGTANCFTNPRYGAGAATNPD 159
>XYLA_ECO57 (Q7A9X4) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 35.8 bits (81), Expect = 0.035 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 E+ +K LWGTA F +PR GAAT+P+ Sbjct: 132 ESGVKLLWGTANCFTNPRYGAGAATNPD 159
>XYLA_BACSU (P04788) Xylose isomerase (EC 5.3.1.5)| Length = 445 Score = 35.8 bits (81), Expect = 0.035 Identities = 14/25 (56%), Positives = 19/25 (76%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATS 80 + +K LW TA +F +PR +HGAATS Sbjct: 139 SGVKLLWNTANMFTNPRFVHGAATS 163
>XYLA_SALTY (Q8ZL90) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 34.7 bits (78), Expect = 0.079 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ++ +K LWGTA F +PR GAAT+P+ Sbjct: 132 QSGVKLLWGTANCFTNPRYGAGAATNPD 159
>XYLA_SALTI (Q7C637) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 34.7 bits (78), Expect = 0.079 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ++ +K LWGTA F +PR GAAT+P+ Sbjct: 132 QSGVKLLWGTANCFTNPRYGAGAATNPD 159
>XYLA_KLEPN (P29442) Xylose isomerase (EC 5.3.1.5) (XI)| Length = 440 Score = 34.7 bits (78), Expect = 0.079 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ++ +K LWGTA F +PR GAAT+P+ Sbjct: 132 QSGVKLLWGTANCFTNPRYGAGAATNPD 159
>XYLA_TETHA (O82845) Xylose isomerase (EC 5.3.1.5)| Length = 435 Score = 34.3 bits (77), Expect = 0.10 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATS 80 +T +K LW TA +F HP ++GAAT+ Sbjct: 130 KTGVKLLWNTANMFTHPTFVNGAATT 155
>XYLA_ENTFA (Q7C3R3) Xylose isomerase (EC 5.3.1.5)| Length = 435 Score = 34.3 bits (77), Expect = 0.10 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATS 80 ET IK LW TA +F +PR ++GAA++ Sbjct: 130 ETGIKLLWNTANMFSNPRYVNGAAST 155
>XYLA_PSESM (Q880Z4) Xylose isomerase (EC 5.3.1.5)| Length = 438 Score = 34.3 bits (77), Expect = 0.10 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATSPE 86 ++ IK LWGTA F +PR GAA++P+ Sbjct: 131 QSGIKLLWGTANCFSNPRFAAGAASNPD 158
>XYLA_LACBR (P29443) Xylose isomerase (EC 5.3.1.5)| Length = 449 Score = 33.9 bits (76), Expect = 0.13 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATSP 83 + +K LW T+ +F +PR + GAATSP Sbjct: 135 SGMKVLWNTSNMFTNPRFVEGAATSP 160
>XYLA_LACLA (Q9CFG7) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 33.9 bits (76), Expect = 0.13 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +3 Query: 6 TNIKPLWGTAQLFMHPRXMHGAATS 80 T IK LW TA +F +PR M+G +TS Sbjct: 133 TGIKLLWNTANMFSNPRYMNGVSTS 157
>XYLA_OCEIH (Q8ELU7) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 32.7 bits (73), Expect = 0.30 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATS 80 ++ K LW T F HPR +HGAA+S Sbjct: 130 DSKTKLLWNTVNNFTHPRFVHGAASS 155
>XYLA_STAXY (P27157) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 32.0 bits (71), Expect = 0.51 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +3 Query: 3 ETNIKPLWGTAQLFMHPRXMHGAATS 80 +T K LW T F H R +HGAATS Sbjct: 129 QTGKKLLWNTTNNFTHERFVHGAATS 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,405,275 Number of Sequences: 219361 Number of extensions: 76592 Number of successful extensions: 194 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 192 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 194 length of database: 80,573,946 effective HSP length: 4 effective length of database: 79,696,502 effective search space used: 1912716048 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
