ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9i18 |
|---|---|
| Clone Library Name | barley_pub |
>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)| (NY-REN-2 antigen) (CLL-associated antigen KW-14) Length = 579 Score = 89.4 bits (220), Expect = 8e-18 Identities = 43/89 (48%), Positives = 57/89 (64%) Frame = +3 Query: 354 PSSENKNADDVADKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKK 533 PS + + + +N +DF + F+IKSYSEDDIH+SIKYN+W ST +GNK+ Sbjct: 382 PSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKR 441 Query: 534 LDAAYQEAQAKGSSCPIFLFFSVNTSGQF 620 LDAAY+ KG P++L FSVN SG F Sbjct: 442 LDAAYRSMNGKG---PVYLLFSVNGSGHF 467
>YTHD3_PONPY (Q5RFL8) YTH domain protein 3| Length = 585 Score = 87.0 bits (214), Expect = 4e-17 Identities = 40/73 (54%), Positives = 53/73 (72%) Frame = +3 Query: 402 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 581 +N +DF + + F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY+ KG P Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460 Query: 582 IFLFFSVNTSGQF 620 ++L FSVN SG F Sbjct: 461 LYLLFSVNGSGHF 473
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 87.0 bits (214), Expect = 4e-17 Identities = 40/73 (54%), Positives = 53/73 (72%) Frame = +3 Query: 402 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 581 +N +DF + + F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY+ KG P Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460 Query: 582 IFLFFSVNTSGQF 620 ++L FSVN SG F Sbjct: 461 LYLLFSVNGSGHF 473
>YTHD3_HUMAN (Q7Z739) YTH domain protein 3| Length = 585 Score = 87.0 bits (214), Expect = 4e-17 Identities = 40/73 (54%), Positives = 53/73 (72%) Frame = +3 Query: 402 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 581 +N +DF + + F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY+ KG P Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460 Query: 582 IFLFFSVNTSGQF 620 ++L FSVN SG F Sbjct: 461 LYLLFSVNGSGHF 473
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 82.8 bits (203), Expect = 8e-16 Identities = 37/73 (50%), Positives = 52/73 (71%) Frame = +3 Query: 402 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 581 +N ++F + F+IKSYSEDDIH+SIKY++W ST +GNK+LD A++ +KG P Sbjct: 377 YNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---P 433 Query: 582 IFLFFSVNTSGQF 620 ++L FSVN SG F Sbjct: 434 VYLLFSVNGSGHF 446
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 81.6 bits (200), Expect = 2e-15 Identities = 37/73 (50%), Positives = 53/73 (72%) Frame = +3 Query: 402 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 581 +N ++F + F+IKSYSEDDIH+SIKY++W ST +GNK+LD+A++ +KG P Sbjct: 377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG---P 433 Query: 582 IFLFFSVNTSGQF 620 ++L FSVN SG F Sbjct: 434 VYLLFSVNGSGHF 446
>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor| YT521) Length = 727 Score = 42.7 bits (99), Expect = 0.001 Identities = 28/94 (29%), Positives = 48/94 (51%) Frame = +3 Query: 339 KGQTLPSSENKNADDVADKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTT 518 K + L SS D K ++ L+D A+FF+IKS + +++ + VW++ Sbjct: 329 KHEKLSSSVRAVRKDQTSKLKYVLQD-------ARFFLIKSNNHENVSLAKAKGVWSTLP 381 Query: 519 NGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQF 620 KKL+ A++ A++ + L FSV SG+F Sbjct: 382 VNEKKLNLAFRSARS------VILIFSVRESGKF 409
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 41.2 bits (95), Expect = 0.003 Identities = 21/62 (33%), Positives = 37/62 (59%) Frame = +3 Query: 435 DAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSG 614 DA+FF+IKS + +++ + VW++ KKL+ A++ A++ + L FSV SG Sbjct: 357 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 410 Query: 615 QF 620 +F Sbjct: 411 KF 412
>VIF_SIVVG (P27983) Virion infectivity factor (Vif) (SOR protein) (Q protein)| Length = 232 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 9/79 (11%) Frame = +2 Query: 47 KQWL----WK--QRLRKHWLRKQRLWKQWLRKQRL-WKQRV*FQVVWSVGCFYGYQIQQA 205 K+W+ WK + L W Q + + W+R ++L WK R+ +Q+ W+ Y+I Sbjct: 5 KEWVMRVTWKVPEELITKW---QGIVRYWMRTRKLDWKYRMHYQITWAWYTMSRYEIPLG 61 Query: 206 QRTWQRILWFWQ--*ESGW 256 Q + +W E GW Sbjct: 62 QHGSIHVDLYWHLTPEKGW 80
>ZFY16_MOUSE (Q80U44) Zinc finger FYVE domain-containing protein 16 (Endofin)| (Endosomal-associated FYVE domain protein) Length = 1528 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = +3 Query: 315 GHTVTIAVKGQTLPSSENKNADDVADKAQ-FNLEDFPVQYDDAKFFVIKSYSEDDIHKSI 491 G + TIA+ + LP +E + D A K + F L DFP+Q + F+ ++ ED + + Sbjct: 292 GGSNTIAMPCK-LPENEGISPSDPASKDENFKLPDFPLQENRTSVFMKQTVKEDSRNLDL 350 Query: 492 KYN 500 K N Sbjct: 351 KDN 353
>IME1_YEAST (P21190) Meiosis-inducing protein 1| Length = 360 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Frame = +3 Query: 363 ENKNADDVADKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDA 542 E+ N+ + +Q+ + FP D+ F + YS HKS N + +T+N N D Sbjct: 218 ESINSKNTDSYSQYQ-DQFPPHTDNIHSFNNRHYSN---HKSTNCNYYNNTSNNNNASDN 273 Query: 543 AYQ------EAQAKGSSCPIFLFFSVNTS 611 Y+ E Q P+ + F V S Sbjct: 274 VYEADPFIDEPQVPSYYYPLEIAFDVEKS 302
>RPOC2_PROMT (Q46J24) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1369 Score = 30.0 bits (66), Expect = 6.1 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +1 Query: 169 GGVFLWIPDTTGPEDVATDIMVLAMRVRMERLSSTEVLGQVVSRT 303 GG LWIP T ++ DI +L ++ R + TEV+ + S+T Sbjct: 651 GGTLLWIPQET--HEINKDISLLMIKDRQWIEAGTEVVKDIFSQT 693
>LP61_EIMTE (P15714) Antigen LPMC-61 (Fragment)| Length = 255 Score = 30.0 bits (66), Expect = 6.1 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Frame = +2 Query: 47 KQWLWKQRLRKHWLRKQRLWKQWLRKQRLWKQRV*FQVVWSVGCFYGYQIQQAQRTW--- 217 +QW +Q R+H ++Q + Q +Q +Q+ Q WS Q QQ Q+ W Sbjct: 102 QQWPQQQHRRQHGQQQQCMNSQQQLQQCGQQQQQQLQQQWS-----EQQQQQQQQQWPEQ 156 Query: 218 ----QRILWFWQ*ESGWND*AQQRS*VRSFQEPESIWP 319 Q+ W Q + W+D QQ+ + + + WP Sbjct: 157 PEQQQQQQWPEQQQQQWSDQNQQQQAQQWQAQQQQQWP 194
>SYE2_EHRRW (Q5HB98) Glutamyl-tRNA synthetase 2 (EC 6.1.1.17) (Glutamate--tRNA| ligase 2) (GluRS 2) Length = 470 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = +3 Query: 303 QKAFGHTVTIAVKGQTLPS-----SENKNADDVADKAQFNLEDFPVQYDDAKFFVIKS 461 +K G+ V G L KN ++A+++ F +ED P+ +D +IKS Sbjct: 329 EKTIGYKVNTEKIGYLLNGINELKKRTKNLVNLANESLFYVEDIPISFDQESLIIIKS 386
>SYE2_EHRRG (Q5FGW4) Glutamyl-tRNA synthetase 2 (EC 6.1.1.17) (Glutamate--tRNA| ligase 2) (GluRS 2) Length = 470 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = +3 Query: 303 QKAFGHTVTIAVKGQTLPS-----SENKNADDVADKAQFNLEDFPVQYDDAKFFVIKS 461 +K G+ V G L KN ++A+++ F +ED P+ +D +IKS Sbjct: 329 EKTIGYKVNTEKIGYLLNGINELKKRTKNLVNLANESLFYVEDIPISFDQESLIIIKS 386
>Y926_STRP8 (Q8P1E4) Hypothetical UPF0230 protein spyM18_0926| Length = 282 Score = 29.6 bits (65), Expect = 8.0 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +3 Query: 390 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 563 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSQNLPKTSQPSLSELDNLLGLLSS 78 Query: 564 KGSSCPIFLFFSVNTSG 614 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95
>Y865_STRP1 (Q9A0A6) Hypothetical UPF0230 protein SPy0865/M5005_Spy0672| Length = 282 Score = 29.6 bits (65), Expect = 8.0 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +3 Query: 390 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 563 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSQNLPKTSQPSLSELDNLLGLLSS 78 Query: 564 KGSSCPIFLFFSVNTSG 614 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95
>Y690_STRP6 (Q5XCN8) Hypothetical UPF0230 protein M6_Spy0690| Length = 282 Score = 29.6 bits (65), Expect = 8.0 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +3 Query: 390 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 563 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSQNLPKTSQPSLSELDNLLGLLSS 78 Query: 564 KGSSCPIFLFFSVNTSG 614 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,966,380 Number of Sequences: 219361 Number of extensions: 1634401 Number of successful extensions: 4722 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4555 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4712 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
