>Y1773_SYNY3 (P73623) Hypothetical protein sll1773|
          Length = 232

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 188 SFSFFSYYAPCHQNHLCANITNDDHTTIGDALTARARAGLAIIS 57
           SFSF  YY P H N     + N+D+   G          + I++
Sbjct: 23  SFSFSHYYDPAHMNFSNLRVINEDYIAPGQGFATHGHKDMEIVT 66

>VGLM_NYV (Q83887) Envelope polyprotein precursor [Contains: Glycoprotein 1|
           (G1); Glycoprotein 2 (G2)]
          Length = 1140

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
 Frame = -3

Query: 457 DTSSKILCVKITNNY-LTTIEDALRASSTVRMFNRWYKCPHQQPTTHHTSSSMECMLI-- 287
           +  +K + +K T N  +TT E A ++  TV  ++      H  PT H  +    CM +  
Sbjct: 101 EAKTKEVSLKGTCNIPVTTFEAAYKSRKTVICYDLACNQTHCLPTVHLIAPVQTCMSVRS 160

Query: 286 --VCKITKRVH*TWKK*SCLPRSLCVNRCFKFIRFHSLSSLIMRHVIKIIYVPILPTMII 113
             +  ++ R+   ++K  C+   L    C  FI  H+++     H    + +PI   ++ 
Sbjct: 161 CMIGLLSSRIQVIYEKTYCVTGQLVEGLC--FIPTHTIALTQPGHTYDTMTLPITCFLVA 218

Query: 112 QPL 104
           + L
Sbjct: 219 KKL 221

>RNR_CHLMU (Q9PK00) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 692

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -1

Query: 480 LSFLIYCLTHHQKSYVSKLPTTILQPLKMPLEHLQQSVCSIVGISVHINNQQHIIQALQW 301
           LSF++  L H      +KLP   +   K+ LE L + +   + ISV + +   + QA++W
Sbjct: 586 LSFVLPELCHEGFIPAAKLPKKYVIKTKLGLEELPEHLLPGIPISVQLASVTLLTQAIEW 645

Query: 300 SV 295
           ++
Sbjct: 646 TL 647

>Y114_MYCPN (P75448) Putative acetyltransferase MPN114 (EC 2.3.1.-)|
           (C09_orf600)
          Length = 600

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 472 PHLLLDTSSKILCVKITNNYLTTIEDALRASSTVRMFNRWY 350
           P +LLD  +    V + N  LTT    LR S+    FNRW+
Sbjct: 263 PEMLLDIYNSAFIVNLDNVELTTPLQLLRNSTWTPNFNRWH 303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,208,968
Number of Sequences: 219361
Number of extensions: 1531313
Number of successful extensions: 3453
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3453
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)