ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9i06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase Length = 1710 Score = 1261 bits (636), Expect = 0.0 Identities = 656/660 (99%), Gaps = 2/660 (0%) Strand = Plus / Plus Query: 1 tggttgcggttcagcgtggcattttggcatacgttccggggtactggnaggagatccctt 60 ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 328 tggtttcggttcagcgtggcgttttggcatacgttccggggtactgg-aggagatccctt 386 Query: 61 tggtgcacctacgaagaactggccttgggaggatggcaccaattccttggccatggctaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 tggtgcacctacgaagaactggccttgggaggatggcaccaattccttggccatggctaa 446 Query: 121 gagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaaggtggtgctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 gagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaaggtggtgctt 506 Query: 181 ccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgctaacttgga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 ccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgctaacttgga 566 Query: 241 tgagatagttgagctggcaaagcaactccagagtgagaccaatataaagccattatgggg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 tgagatagttgagctggcaaagcaactccagagtgagaccaatataaagccattatgggg 626 Query: 301 aactgcacaacttttcatgcatccacgttacatgcacggagctgctactagcccagaggt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 aactgcacaacttttcatgcatccacgttacatgcacggagctgctactagcccagaggt 686 Query: 361 caaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttactcactacct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 caaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttactcactacct 746 Query: 421 aggcggtgagaactacgtattctggggtggaagagagggttaccaaactcttctcaatac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747 aggcggtgagaactacgtattctggggtggaagagagggttaccaaactcttctcaatac 806 Query: 481 cgatatgaagagggaacttgaacatttggctaactttcttcaagctgctgttaaccacaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 cgatatgaagagggaacttgaacatttggctaactttcttcaagctgctgttaaccacaa 866 Query: 541 gaagaagatcggctttaacggaacattgttgatagagcctaagccacaagaaccaacaaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 gaagaagatcggctttaacggaacattgttgatagagcctaagccacaagaaccaacaaa 926 Query: 601 gcatcagtatgactggggatgttgcaactacattctctttcctacagaagtttggtctta 660 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 gcatcagtatgact-gggatgttgcaactacattctctttcctacagaagtttggtctta 985
>ref|XM_479446.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1760 Score = 710 bits (358), Expect = 0.0 Identities = 582/654 (88%), Gaps = 2/654 (0%) Strand = Plus / Plus Query: 5 tgcggttcagcgtggcattttggcatacgttccggggtactggnaggagatccctttggt 64 |||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||| Sbjct: 360 tgcggttcagcgtggccttttggcatacgttccgtggtactgg-aggagatccttttggt 418 Query: 65 gcacctacgaagaactggccttgggaggatggcaccaattccttggccatggctaagaga 124 || ||||| ||| |||||||||||||||||||| ||||| |||| ||||||||||||| Sbjct: 419 gcccctacaaagtcttggccttgggaggatggcacaaattcgttggacatggctaagaga 478 Query: 125 agaatgaaagctcacttcgagttcatggagaagcttggagttgaaaggtggtgcttccat 184 ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 479 agaatgagagctcactttgagttcatggagaagcttggagttgacaggtggtgcttccat 538 Query: 185 gacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgctaacttggatgag 244 |||||||| || ||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 539 gacagggatattgcccctgatggcaaaacactcacggaaacaaataaaaatttggatgag 598 Query: 245 atagttgagctggcaaagcaactccagagtgagaccaatataaagccattatggggaact 304 |||||||| ||||||||| |||||||| |||||||||||||| ||| | ||||| ||| Sbjct: 599 atagttgaactggcaaagaaactccaggaggagaccaatataaaaccactgtgggggact 658 Query: 305 gcacaacttttcatgcatccacgttacatgcacggagctgctactagcccagaggtcaag 364 ||||| ||||||||||| || || ||||||||||| |||||||||||||||||||| || Sbjct: 659 gcacagcttttcatgcacccgcgctacatgcacggtgctgctactagcccagaggttaaa 718 Query: 365 gtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttactcactacctaggc 424 ||||||||||||| |||||||||||| ||||||||||| ||||| || |||||||||||| Sbjct: 719 gtgtatgcttatggtgctgctcaagttaagaaagctttagaggtcacccactacctaggc 778 Query: 425 ggtgagaactacgtattctggggtggaagagagggttaccaaactcttctcaataccgat 484 ||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||| || Sbjct: 779 ggtgaaaactatgttttctggggaggaagagagggttaccaaactcttcttaatactgac 838 Query: 485 atgaagagggaacttgaacatttggctaactttcttcaagctgctgttaaccacaagaag 544 |||||||| |||||||| |||||||||| |||||||||||||| ||| || |||||||| Sbjct: 839 atgaagagagaacttgaccatttggctagttttcttcaagctgcagttgactacaagaag 898 Query: 545 aagatcggctttaacggaacattgttgatagagcctaagccacaagaaccaacaaagcat 604 ||||| || ||||| |||||| | |||||||||||||| ||||||||||| ||||| || Sbjct: 899 aagattggatttaatggaacactcttgatagagcctaaaccacaagaacccacaaaacac 958 Query: 605 cagtatgactggggatgttgcaactacattctctttcctacagaagtttggtct 658 ||||| || | ||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 959 cagtacga-ttgggatgttgcaaccacattctctttcctacagaaatatggtct 1011
>dbj|AK072249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001E09, full insert sequence Length = 1760 Score = 710 bits (358), Expect = 0.0 Identities = 582/654 (88%), Gaps = 2/654 (0%) Strand = Plus / Plus Query: 5 tgcggttcagcgtggcattttggcatacgttccggggtactggnaggagatccctttggt 64 |||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||| Sbjct: 360 tgcggttcagcgtggccttttggcatacgttccgtggtactgg-aggagatccttttggt 418 Query: 65 gcacctacgaagaactggccttgggaggatggcaccaattccttggccatggctaagaga 124 || ||||| ||| |||||||||||||||||||| ||||| |||| ||||||||||||| Sbjct: 419 gcccctacaaagtcttggccttgggaggatggcacaaattcgttggacatggctaagaga 478 Query: 125 agaatgaaagctcacttcgagttcatggagaagcttggagttgaaaggtggtgcttccat 184 ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 479 agaatgagagctcactttgagttcatggagaagcttggagttgacaggtggtgcttccat 538 Query: 185 gacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgctaacttggatgag 244 |||||||| || ||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 539 gacagggatattgcccctgatggcaaaacactcacggaaacaaataaaaatttggatgag 598 Query: 245 atagttgagctggcaaagcaactccagagtgagaccaatataaagccattatggggaact 304 |||||||| ||||||||| |||||||| |||||||||||||| ||| | ||||| ||| Sbjct: 599 atagttgaactggcaaagaaactccaggaggagaccaatataaaaccactgtgggggact 658 Query: 305 gcacaacttttcatgcatccacgttacatgcacggagctgctactagcccagaggtcaag 364 ||||| ||||||||||| || || ||||||||||| |||||||||||||||||||| || Sbjct: 659 gcacagcttttcatgcacccgcgctacatgcacggtgctgctactagcccagaggttaaa 718 Query: 365 gtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttactcactacctaggc 424 ||||||||||||| |||||||||||| ||||||||||| ||||| || |||||||||||| Sbjct: 719 gtgtatgcttatggtgctgctcaagttaagaaagctttagaggtcacccactacctaggc 778 Query: 425 ggtgagaactacgtattctggggtggaagagagggttaccaaactcttctcaataccgat 484 ||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||| || Sbjct: 779 ggtgaaaactatgttttctggggaggaagagagggttaccaaactcttcttaatactgac 838 Query: 485 atgaagagggaacttgaacatttggctaactttcttcaagctgctgttaaccacaagaag 544 |||||||| |||||||| |||||||||| |||||||||||||| ||| || |||||||| Sbjct: 839 atgaagagagaacttgaccatttggctagttttcttcaagctgcagttgactacaagaag 898 Query: 545 aagatcggctttaacggaacattgttgatagagcctaagccacaagaaccaacaaagcat 604 ||||| || ||||| |||||| | |||||||||||||| ||||||||||| ||||| || Sbjct: 899 aagattggatttaatggaacactcttgatagagcctaaaccacaagaacccacaaaacac 958 Query: 605 cagtatgactggggatgttgcaactacattctctttcctacagaagtttggtct 658 ||||| || | ||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 959 cagtacga-ttgggatgttgcaaccacattctctttcctacagaaatatggtct 1011
>gb|BT018392.1| Zea mays clone EL01N0319D07.d mRNA sequence Length = 1548 Score = 613 bits (309), Expect = e-172 Identities = 556/636 (87%), Gaps = 2/636 (0%) Strand = Plus / Plus Query: 25 tggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactggcc 84 ||||| |||||||| |||||||| | ||||| || ||||| ||||| |||| ||||| Sbjct: 107 tggcacacgttccgcggtactggc-gctgatcctttcggtgctcctacaaagacttggcc 165 Query: 85 ttgggaggatggcaccaattccttggccatggctaagagaagaatgaaagctcacttcga 144 ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| || Sbjct: 166 ttgggaggatggcacaaattcgttggccatggctaagagaagaatgagagctcactttga 225 Query: 145 gttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccctga 204 ||||||||||||| | |||||||| | |||||||||||||||||||| || ||||| || Sbjct: 226 gttcatggagaagttgggagttgacaaatggtgcttccatgacagggatattgccccgga 285 Query: 205 tggcaaaacactcgcggaaacaaatgctaacttggatgagatagttgagctggcaaagca 264 ||| || || || | ||||||||| ||||||||||||||||||| ||||||||||||| Sbjct: 286 tgggaagactcttgaagaaacaaattctaacttggatgagatagtccagctggcaaagca 345 Query: 265 actccagagtgagaccaatataaagccattatggggaactgcacaacttttcatgcatcc 324 || ||| |||||||||||||||||||||| ||||| || ||||| || || |||||||| Sbjct: 346 gctgcagggtgagaccaatataaagccattgtggggtaccgcacagctctttatgcatcc 405 Query: 325 acgttacatgcacggagctgctactagcccagaggtcaaggtgtatgcttatgctgctgc 384 |||||||||||| || |||||||| ||||||||||| || || ||||||||||| ||||| Sbjct: 406 acgttacatgcatggcgctgctacgagcccagaggttaaagtatatgcttatgcggctgc 465 Query: 385 tcaagtgaagaaagctttggaggttactcactacctaggcggtgagaactacgtattctg 444 ||||| ||||||||||||||||| |||||||||||||| ||||| ||||| || ||||| Sbjct: 466 acaagttaagaaagctttggaggtcactcactacctaggtggtgaaaactatgtgttctg 525 Query: 445 gggtggaagagagggttaccaaactcttctcaataccgatatgaagagggaacttgaaca 504 |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || Sbjct: 526 gggtggaagagagggttaccaaactcttctgaatactgatatgaagagagaacttgacca 585 Query: 505 tttggctaactttcttcaagctgctgttaaccacaagaagaagatcggctttaacggaac 564 | |||||||||||||||||||||||||| || ||||||||||||| || || |||||||| Sbjct: 586 tctggctaactttcttcaagctgctgttgactacaagaagaagattggattcaacggaac 645 Query: 565 attgttgatagagcctaagccacaagaaccaacaaagcatcagtatgactggggatgttg 624 | | |||||||||||||| ||||| ||||||||||| || |||||||||| ||||||||| Sbjct: 646 actattgatagagcctaaaccacaggaaccaacaaaacaccagtatgact-gggatgttg 704 Query: 625 caactacattctctttcctacagaagtttggtctta 660 | ||||| || |||| |||||||||| ||||||| Sbjct: 705 cgactacgtttgcttttctacagaagtacggtctta 740
>gb|AY104014.1| Zea mays PCO103489 mRNA sequence Length = 2135 Score = 613 bits (309), Expect = e-172 Identities = 571/656 (87%), Gaps = 2/656 (0%) Strand = Plus / Plus Query: 5 tgcggttcagcgtggcattttggcatacgttccggggtactggnaggagatccctttggt 64 |||| ||||| || ||||| ||||| |||||||| |||||||| | ||||| || ||| Sbjct: 665 tgcgcttcagtgttgcattctggcacacgttccgtggtactggc-gctgatcctttcggt 723 Query: 65 gcacctacgaagaactggccttgggaggatggcaccaattccttggccatggctaagaga 124 || ||||| |||| |||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 724 gctcctacaaagacttggccttgggaggacggcacaaattctttggccatggctaagaga 783 Query: 125 agaatgaaagctcacttcgagttcatggagaagcttggagttgaaaggtggtgcttccat 184 ||||||| ||||||||| ||||||||||||||| | |||||||| | |||||||||||| Sbjct: 784 agaatgagagctcactttgagttcatggagaagttgggagttgacaaatggtgcttccat 843 Query: 185 gacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgctaacttggatgag 244 |||||||| || ||||| ||||| || || || | ||||||||| |||||||||||||| Sbjct: 844 gacagggatattgccccggatgggaagactcttgaagaaacaaattctaacttggatgag 903 Query: 245 atagttgagctggcaaagcaactccagagtgagaccaatataaagccattatggggaact 304 ||||| ||||||||||||| || ||| |||||||||||||||||||||| ||||| || Sbjct: 904 atagtccagctggcaaagcagctgcagggtgagaccaatataaagccattgtggggtacc 963 Query: 305 gcacaacttttcatgcatccacgttacatgcacggagctgctactagcccagaggtcaag 364 ||||| || || |||||||||||||||||||| || |||||||| ||||||||||| || Sbjct: 964 gcacagctctttatgcatccacgttacatgcatggcgctgctacgagcccagaggttaaa 1023 Query: 365 gtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttactcactacctaggc 424 || ||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct: 1024 gtatatgcttatgcggctgcacaagttaagaaagctttggaggtcactcactacctaggt 1083 Query: 425 ggtgagaactacgtattctggggtggaagagagggttaccaaactcttctcaataccgat 484 ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1084 ggtgaaaactatgtgttctggggtggaagagagggttaccaaactcttctgaatactgat 1143 Query: 485 atgaagagggaacttgaacatttggctaactttcttcaagctgctgttaaccacaagaag 544 |||||||| |||||||| ||| |||||||||||||||||||||||||| || |||||||| Sbjct: 1144 atgaagagagaacttgaccatctggctaactttcttcaagctgctgttgactacaagaag 1203 Query: 545 aagatcggctttaacggaacattgttgatagagcctaagccacaagaaccaacaaagcat 604 ||||| || || ||||||||| | |||||||||||||| ||||| ||||||||||| || Sbjct: 1204 aagattggattcaacggaacactattgatagagcctaaaccacaggaaccaacaaaacac 1263 Query: 605 cagtatgactggggatgttgcaactacattctctttcctacagaagtttggtctta 660 |||||||||| |||||||||| ||||| || |||| |||||||||| ||||||| Sbjct: 1264 cagtatgact-gggatgttgcgactacgtttgcttttctacagaagtacggtctta 1318
>gb|AF140230.1|AF140230 Oryza sativa xylose isomerase mRNA, partial cds Length = 510 Score = 539 bits (272), Expect = e-150 Identities = 443/500 (88%) Strand = Plus / Plus Query: 101 aattccttggccatggctaagagaagaatgaaagctcacttcgagttcatggagaagctt 160 ||||| |||| ||||| |||||||||||||| ||||||||| ||||||||| |||||||| Sbjct: 3 aattcgttggacatgggtaagagaagaatgagagctcactttgagttcatgaagaagctt 62 Query: 161 ggagttgaaaggtggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcg 220 | |||||| ||||||||||||||||||||||| || ||||||||||||||||||||| || Sbjct: 63 gaagttgacaggtggtgcttccatgacagggatattgcccctgatggcaaaacactcacg 122 Query: 221 gaaacaaatgctaacttggatgagatagttgagctggcaaagcaactccagagtgagacc 280 ||||||||| || ||||||||||||||||| ||||||||| |||||||| |||||| Sbjct: 123 gaaacaaataaaaatttggatgagatagttgaactggcaaagaaactccaggaggagacc 182 Query: 281 aatataaagccattatggggaactgcacaacttttcatgcatccacgttacatgcacgga 340 |||||||| ||| | ||||| |||||||| ||||||||||| || || ||||||||||| Sbjct: 183 aatataaaaccactgtgggggactgcacagcttttcatgcacccgcgctacatgcacggt 242 Query: 341 gctgctactagcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagct 400 |||||||||||||||||||| || ||||||||||||| |||||||||||| ||||||||| Sbjct: 243 gctgctactagcccagaggttaaagtgtatgcttatggtgctgctcaagttaagaaagct 302 Query: 401 ttggaggttactcactacctaggcggtgagaactacgtattctggggtggaagagagggt 460 || ||||| || ||||||||||||||||| ||||| || |||||||| |||||||||||| Sbjct: 303 ttagaggtcacccactacctaggcggtgaaaactatgttttctggggaggaagagagggt 362 Query: 461 taccaaactcttctcaataccgatatgaagagggaacttgaacatttggctaactttctt 520 |||||||||||||| ||||| || |||||||| |||||||| |||||||||| |||||| Sbjct: 363 taccaaactcttcttaatactgacatgaagagagaacttgaccatttggctagttttctt 422 Query: 521 caagctgctgttaaccacaagaagaagatcggctttaacggaacattgttgatagagcct 580 |||||||| ||| || ||||||||||||| || ||||| |||||| | |||||||||||| Sbjct: 423 caagctgcagttgactacaagaagaagattggatttaatggaacactcttgatagagcct 482 Query: 581 aagccacaagaaccaacaaa 600 || ||||||||||| ||||| Sbjct: 483 aaaccacaagaacccacaaa 502
>dbj|AK104085.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F02, full insert sequence Length = 1177 Score = 432 bits (218), Expect = e-118 Identities = 372/422 (88%), Gaps = 1/422 (0%) Strand = Plus / Plus Query: 237 tggatgagatagttgagctggcaaagcaactccagagtgagaccaatataaagccattat 296 |||||||||||||||| ||||||||| |||||||| |||||||||||||| ||| | | Sbjct: 1 tggatgagatagttgaactggcaaagaaactccaggaggagaccaatataaaaccactgt 60 Query: 297 ggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctactagcccag 356 |||| |||||||| ||||||||||| || || ||||||||||| |||||||||||||||| Sbjct: 61 gggggactgcacagcttttcatgcacccgcgctacatgcacggtgctgctactagcccag 120 Query: 357 aggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttactcact 416 |||| || ||||||||||||| |||||||||||| ||||||||||| ||||| || |||| Sbjct: 121 aggttaaagtgtatgcttatggtgctgctcaagttaagaaagctttagaggtcacccact 180 Query: 417 acctaggcggtgagaactacgtattctggggtggaagagagggttaccaaactcttctca 476 ||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| | Sbjct: 181 acctaggcggtgaaaactatgttttctggggaggaagagagggttaccaaactcttctta 240 Query: 477 ataccgatatgaagagggaacttgaacatttggctaactttcttcaagctgctgttaacc 536 |||| || |||||||| |||||||| |||||||||| |||||||||||||| ||| || Sbjct: 241 atactgacatgaagagagaacttgaccatttggctagttttcttcaagctgcagttgact 300 Query: 537 acaagaagaagatcggctttaacggaacattgttgatagagcctaagccacaagaaccaa 596 ||||||||||||| || ||||| |||||| | |||||||||||||| ||||||||||| | Sbjct: 301 acaagaagaagattggatttaatggaacactcttgatagagcctaaaccacaagaaccca 360 Query: 597 caaagcatcagtatgactggggatgttgcaactacattctctttcctacagaagtttggt 656 |||| || ||||| || | ||||||||||||| |||||||||||||||||||| | |||| Sbjct: 361 caaaacaccagtacga-ttgggatgttgcaaccacattctctttcctacagaaatatggt 419 Query: 657 ct 658 || Sbjct: 420 ct 421
>emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene Length = 4473 Score = 222 bits (112), Expect = 1e-54 Identities = 125/128 (97%), Gaps = 1/128 (0%) Strand = Plus / Plus Query: 1 tggttgcggttcagcgtggcattttggcatacgttccggggtactggnaggagatccctt 60 ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 1038 tggtttcggttcagcgtggcgttttggcatacgttccggggtactgg-aggagatccctt 1096 Query: 61 tggtgcacctacgaagaactggccttgggaggatggcaccaattccttggccatggctaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1097 tggtgcacctacgaagaactggccttgggaggatggcaccaattccttggccatggctaa 1156 Query: 121 gagaagaa 128 |||||||| Sbjct: 1157 gagaagaa 1164 Score = 208 bits (105), Expect = 2e-50 Identities = 105/105 (100%) Strand = Plus / Plus Query: 405 aggttactcactacctaggcggtgagaactacgtattctggggtggaagagagggttacc 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2317 aggttactcactacctaggcggtgagaactacgtattctggggtggaagagagggttacc 2376 Query: 465 aaactcttctcaataccgatatgaagagggaacttgaacatttgg 509 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2377 aaactcttctcaataccgatatgaagagggaacttgaacatttgg 2421 Score = 184 bits (93), Expect = 2e-43 Identities = 93/93 (100%) Strand = Plus / Plus Query: 129 tgaaagctcacttcgagttcatggagaagcttggagttgaaaggtggtgcttccatgaca 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1264 tgaaagctcacttcgagttcatggagaagcttggagttgaaaggtggtgcttccatgaca 1323 Query: 189 gggacatcgcccctgatggcaaaacactcgcgg 221 ||||||||||||||||||||||||||||||||| Sbjct: 1324 gggacatcgcccctgatggcaaaacactcgcgg 1356 Score = 163 bits (82), Expect = 9e-37 Identities = 82/82 (100%) Strand = Plus / Plus Query: 270 agagtgagaccaatataaagccattatggggaactgcacaacttttcatgcatccacgtt 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2031 agagtgagaccaatataaagccattatggggaactgcacaacttttcatgcatccacgtt 2090 Query: 330 acatgcacggagctgctactag 351 |||||||||||||||||||||| Sbjct: 2091 acatgcacggagctgctactag 2112 Score = 117 bits (59), Expect = 5e-23 Identities = 59/59 (100%) Strand = Plus / Plus Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggt 408 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2188 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggt 2246 Score = 107 bits (54), Expect = 5e-20 Identities = 54/54 (100%) Strand = Plus / Plus Query: 508 ggctaactttcttcaagctgctgttaaccacaagaagaagatcggctttaacgg 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2520 ggctaactttcttcaagctgctgttaaccacaagaagaagatcggctttaacgg 2573 Score = 103 bits (52), Expect = 7e-19 Identities = 52/52 (100%) Strand = Plus / Plus Query: 220 ggaaacaaatgctaacttggatgagatagttgagctggcaaagcaactccag 271 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1883 ggaaacaaatgctaacttggatgagatagttgagctggcaaagcaactccag 1934 Score = 99.6 bits (50), Expect = 1e-17 Identities = 50/50 (100%) Strand = Plus / Plus Query: 560 ggaacattgttgatagagcctaagccacaagaaccaacaaagcatcagta 609 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2710 ggaacattgttgatagagcctaagccacaagaaccaacaaagcatcagta 2759 Score = 91.7 bits (46), Expect = 3e-15 Identities = 53/54 (98%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 607 gtatgactggggatgttgcaactacattctctttcctacagaagtttggtctta 660 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2836 gtatgactggg-atgttgcaactacattctctttcctacagaagtttggtctta 2888
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 143 bits (72), Expect = 8e-31 Identities = 112/124 (90%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 5 tgcggttcagcgtggcattttggcatacgttccggggtactggnaggagatccctttggt 64 |||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||| Sbjct: 28222050 tgcggttcagcgtggccttttggcatacgttccgtggtactgg-aggagatccttttggt 28221992 Query: 65 gcacctacgaagaactggccttgggaggatggcaccaattccttggccatggctaagaga 124 || ||||| ||| |||||||||||||||||||| ||||| |||| ||||||||||||| Sbjct: 28221991 gcccctacaaagtcttggccttgggaggatggcacaaattcgttggacatggctaagaga 28221932 Query: 125 agaa 128 |||| Sbjct: 28221931 agaa 28221928 Score = 137 bits (69), Expect = 5e-29 Identities = 81/85 (95%) Strand = Plus / Minus Query: 133 agctcacttcgagttcatggagaagcttggagttgaaaggtggtgcttccatgacaggga 192 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 28221829 agctcactttgagttcatggagaagcttggagttgacaggtggtgcttccatgacaggga 28221770 Query: 193 catcgcccctgatggcaaaacactc 217 || ||||||||||||||||||||| Sbjct: 28221769 tattgcccctgatggcaaaacactc 28221745 Score = 121 bits (61), Expect = 3e-24 Identities = 88/97 (90%) Strand = Plus / Minus Query: 413 cactacctaggcggtgagaactacgtattctggggtggaagagagggttaccaaactctt 472 ||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| Sbjct: 28220882 cactacctaggcggtgaaaactatgttttctggggaggaagagagggttaccaaactctt 28220823 Query: 473 ctcaataccgatatgaagagggaacttgaacatttgg 509 || ||||| || |||||||| |||||||| ||||||| Sbjct: 28220822 cttaatactgacatgaagagagaacttgaccatttgg 28220786 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 275 gagaccaatataaagccattatggggaactgcacaacttttcatgcatccacgttacatg 334 |||||||||||||| ||| | ||||| |||||||| ||||||||||| || || |||||| Sbjct: 28221177 gagaccaatataaaaccactgtgggggactgcacagcttttcatgcacccgcgctacatg 28221118 Query: 335 cacggagctgctactag 351 ||||| ||||||||||| Sbjct: 28221117 cacggtgctgctactag 28221101 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggt 408 ||||||||||| || ||||||||||||| |||||||||||| ||||||||||| ||||| Sbjct: 28221023 agcccagaggttaaagtgtatgcttatggtgctgctcaagttaagaaagctttagaggt 28220965 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 616 gggatgttgcaactacattctctttcctacagaagtttggtct 658 ||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 28220423 gggatgttgcaaccacattctctttcctacagaaatatggtct 28220381 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 236 ttggatgagatagttgagctggcaaagcaactccag 271 ||||||||||||||||| ||||||||| |||||||| Sbjct: 28221306 ttggatgagatagttgaactggcaaagaaactccag 28221271 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 560 ggaacattgttgatagagcctaagccacaagaaccaacaaagcatcagtatg 611 |||||| | |||||||||||||| ||||||||||| ||||| || ||||||| Sbjct: 28220552 ggaacactcttgatagagcctaaaccacaagaacccacaaaacaccagtatg 28220501 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Minus Query: 515 tttcttcaagctgctgttaaccacaagaagaagatcggctttaa 558 |||||||||||||| ||| || ||||||||||||| || ||||| Sbjct: 28220676 tttcttcaagctgcagttgactacaagaagaagattggatttaa 28220633
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 143 bits (72), Expect = 8e-31 Identities = 112/124 (90%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 5 tgcggttcagcgtggcattttggcatacgttccggggtactggnaggagatccctttggt 64 |||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||| Sbjct: 77595 tgcggttcagcgtggccttttggcatacgttccgtggtactgg-aggagatccttttggt 77537 Query: 65 gcacctacgaagaactggccttgggaggatggcaccaattccttggccatggctaagaga 124 || ||||| ||| |||||||||||||||||||| ||||| |||| ||||||||||||| Sbjct: 77536 gcccctacaaagtcttggccttgggaggatggcacaaattcgttggacatggctaagaga 77477 Query: 125 agaa 128 |||| Sbjct: 77476 agaa 77473 Score = 137 bits (69), Expect = 5e-29 Identities = 81/85 (95%) Strand = Plus / Minus Query: 133 agctcacttcgagttcatggagaagcttggagttgaaaggtggtgcttccatgacaggga 192 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 77374 agctcactttgagttcatggagaagcttggagttgacaggtggtgcttccatgacaggga 77315 Query: 193 catcgcccctgatggcaaaacactc 217 || ||||||||||||||||||||| Sbjct: 77314 tattgcccctgatggcaaaacactc 77290 Score = 121 bits (61), Expect = 3e-24 Identities = 88/97 (90%) Strand = Plus / Minus Query: 413 cactacctaggcggtgagaactacgtattctggggtggaagagagggttaccaaactctt 472 ||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| Sbjct: 76427 cactacctaggcggtgaaaactatgttttctggggaggaagagagggttaccaaactctt 76368 Query: 473 ctcaataccgatatgaagagggaacttgaacatttgg 509 || ||||| || |||||||| |||||||| ||||||| Sbjct: 76367 cttaatactgacatgaagagagaacttgaccatttgg 76331 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 275 gagaccaatataaagccattatggggaactgcacaacttttcatgcatccacgttacatg 334 |||||||||||||| ||| | ||||| |||||||| ||||||||||| || || |||||| Sbjct: 76722 gagaccaatataaaaccactgtgggggactgcacagcttttcatgcacccgcgctacatg 76663 Query: 335 cacggagctgctactag 351 ||||| ||||||||||| Sbjct: 76662 cacggtgctgctactag 76646 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggt 408 ||||||||||| || ||||||||||||| |||||||||||| ||||||||||| ||||| Sbjct: 76568 agcccagaggttaaagtgtatgcttatggtgctgctcaagttaagaaagctttagaggt 76510 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 616 gggatgttgcaactacattctctttcctacagaagtttggtct 658 ||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 75968 gggatgttgcaaccacattctctttcctacagaaatatggtct 75926 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 236 ttggatgagatagttgagctggcaaagcaactccag 271 ||||||||||||||||| ||||||||| |||||||| Sbjct: 76851 ttggatgagatagttgaactggcaaagaaactccag 76816 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 560 ggaacattgttgatagagcctaagccacaagaaccaacaaagcatcagtatg 611 |||||| | |||||||||||||| ||||||||||| ||||| || ||||||| Sbjct: 76097 ggaacactcttgatagagcctaaaccacaagaacccacaaaacaccagtatg 76046 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Minus Query: 515 tttcttcaagctgctgttaaccacaagaagaagatcggctttaa 558 |||||||||||||| ||| || ||||||||||||| || ||||| Sbjct: 76221 tttcttcaagctgcagttgactacaagaagaagattggatttaa 76178
>ref|NM_180872.1| Arabidopsis thaliana xylose isomerase AT5G57655 transcript variant AT5G57655.1 mRNA, complete cds Length = 1863 Score = 111 bits (56), Expect = 3e-21 Identities = 156/188 (82%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 22 ttttggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactg 81 ||||||||||| ||||| || ||||| ||| ||||| |||||||| |||| ||| | || Sbjct: 419 ttttggcatactttccgtgggactgg-aggtgatccatttggtgctgctactaagtattg 477 Query: 82 gccttgggaggatggcaccaattccttggccatggctaagagaagaatgaaagctcactt 141 ||||||||| ||||| || || || || | ||||||||||||||||||| |||| |||| Sbjct: 478 gccttgggaagatggtactaactctgtgtctatggctaagagaagaatgagagctaactt 537 Query: 142 cgagttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccc 201 |||||| || |||| ||||||||||| ||||||| || |||||||| ||||| || || Sbjct: 538 tgagttcttgaagaaacttggagttgattggtggtgttttcatgacagagacatagcacc 597 Query: 202 tgatggca 209 |||||||| Sbjct: 598 tgatggca 605 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Plus Query: 290 ccattatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctact 349 ||||| |||||||| || || |||||| ||||||| ||||| |||||||||| || || Sbjct: 686 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 745 Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggtt 409 ||| | || || ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 746 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 805 Query: 410 actcactacctaggcggtgagaactacgtattctggggtgg 450 || || ||| |||| ||||| |||||||| || |||||||| Sbjct: 806 acacattacttaggtggtgaaaactacgttttttggggtgg 846 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 1048 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 1090
>ref|NM_125147.3| Arabidopsis thaliana xylose isomerase AT5G57655 transcript variant AT5G57655.2 mRNA, complete cds Length = 1902 Score = 111 bits (56), Expect = 3e-21 Identities = 156/188 (82%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 22 ttttggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactg 81 ||||||||||| ||||| || ||||| ||| ||||| |||||||| |||| ||| | || Sbjct: 534 ttttggcatactttccgtgggactgg-aggtgatccatttggtgctgctactaagtattg 592 Query: 82 gccttgggaggatggcaccaattccttggccatggctaagagaagaatgaaagctcactt 141 ||||||||| ||||| || || || || | ||||||||||||||||||| |||| |||| Sbjct: 593 gccttgggaagatggtactaactctgtgtctatggctaagagaagaatgagagctaactt 652 Query: 142 cgagttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccc 201 |||||| || |||| ||||||||||| ||||||| || |||||||| ||||| || || Sbjct: 653 tgagttcttgaagaaacttggagttgattggtggtgttttcatgacagagacatagcacc 712 Query: 202 tgatggca 209 |||||||| Sbjct: 713 tgatggca 720 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Plus Query: 290 ccattatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctact 349 ||||| |||||||| || || |||||| ||||||| ||||| |||||||||| || || Sbjct: 801 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 860 Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggtt 409 ||| | || || ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 861 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 920 Query: 410 actcactacctaggcggtgagaactacgtattctggggtgg 450 || || ||| |||| ||||| |||||||| || |||||||| Sbjct: 921 acacattacttaggtggtgaaaactacgttttttggggtgg 961 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 1086 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 1128
>gb|AY136469.1| Arabidopsis thaliana expressed protein; supported by full length cDNA: Ceres: 122798 (At5g57655) mRNA, complete cds Length = 1823 Score = 111 bits (56), Expect = 3e-21 Identities = 156/188 (82%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 22 ttttggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactg 81 ||||||||||| ||||| || ||||| ||| ||||| |||||||| |||| ||| | || Sbjct: 532 ttttggcatactttccgtgggactgg-aggtgatccatttggtgctgctactaagtattg 590 Query: 82 gccttgggaggatggcaccaattccttggccatggctaagagaagaatgaaagctcactt 141 ||||||||| ||||| || || || || | ||||||||||||||||||| |||| |||| Sbjct: 591 gccttgggaagatggtactaactctgtgtctatggctaagagaagaatgagagctaactt 650 Query: 142 cgagttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccc 201 |||||| || |||| ||||||||||| ||||||| || |||||||| ||||| || || Sbjct: 651 tgagttcttgaagaaacttggagttgattggtggtgttttcatgacagagacatagcacc 710 Query: 202 tgatggca 209 |||||||| Sbjct: 711 tgatggca 718 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Plus Query: 290 ccattatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctact 349 ||||| |||||||| || || |||||| ||||||| ||||| |||||||||| || || Sbjct: 799 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 858 Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggtt 409 ||| | || || ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 859 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 918 Query: 410 actcactacctaggcggtgagaactacgtattctggggtgg 450 || || ||| |||| ||||| |||||||| || |||||||| Sbjct: 919 acacattacttaggtggtgaaaactacgttttttggggtgg 959 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 1084 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 1126
>gb|BT006607.1| Arabidopsis thaliana At5g57655 mRNA, complete cds Length = 1434 Score = 111 bits (56), Expect = 3e-21 Identities = 156/188 (82%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 22 ttttggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactg 81 ||||||||||| ||||| || ||||| ||| ||||| |||||||| |||| ||| | || Sbjct: 265 ttttggcatactttccgtgggactgg-aggtgatccatttggtgctgctactaagtattg 323 Query: 82 gccttgggaggatggcaccaattccttggccatggctaagagaagaatgaaagctcactt 141 ||||||||| ||||| || || || || | ||||||||||||||||||| |||| |||| Sbjct: 324 gccttgggaagatggtactaactctgtgtctatggctaagagaagaatgagagctaactt 383 Query: 142 cgagttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccc 201 |||||| || |||| ||||||||||| ||||||| || |||||||| ||||| || || Sbjct: 384 tgagttcttgaagaaacttggagttgattggtggtgttttcatgacagagacatagcacc 443 Query: 202 tgatggca 209 |||||||| Sbjct: 444 tgatggca 451 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Plus Query: 290 ccattatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctact 349 ||||| |||||||| || || |||||| ||||||| ||||| |||||||||| || || Sbjct: 532 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 591 Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggtt 409 ||| | || || ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 592 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 651 Query: 410 actcactacctaggcggtgagaactacgtattctggggtgg 450 || || ||| |||| ||||| |||||||| || |||||||| Sbjct: 652 acacattacttaggtggtgaaaactacgttttttggggtgg 692 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 817 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 859
>emb|BX831279.1|CNS09ZCJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS74ZE05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1649 Score = 111 bits (56), Expect = 3e-21 Identities = 156/188 (82%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 22 ttttggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactg 81 ||||||||||| ||||| || ||||| ||| ||||| |||||||| |||| ||| | || Sbjct: 353 ttttggcatactttccgtgggactgg-aggtgatccatttggtgctgctactaagtattg 411 Query: 82 gccttgggaggatggcaccaattccttggccatggctaagagaagaatgaaagctcactt 141 ||||||||| ||||| || || || || | ||||||||||||||||||| |||| |||| Sbjct: 412 gccttgggaagatggtactaactctgtgtctatggctaagagaagaatgagagctaactt 471 Query: 142 cgagttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccc 201 |||||| || |||| ||||||||||| ||||||| || |||||||| ||||| || || Sbjct: 472 tgagttcttgaagaaacttggagttgattggtggtgttttcatgacagagacatagcacc 531 Query: 202 tgatggca 209 |||||||| Sbjct: 532 tgatggca 539 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Plus Query: 290 ccattatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctact 349 ||||| |||||||| || || |||||| ||||||| ||||| |||||||||| || || Sbjct: 620 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 679 Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggtt 409 ||| | || || ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 680 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 739 Query: 410 actcactacctaggcggtgagaactacgtattctggggtgg 450 || || ||| |||| ||||| |||||||| || |||||||| Sbjct: 740 acacattacttaggtggtgaaaactacgttttttggggtgg 780 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 905 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 947
>gb|AY084958.1| Arabidopsis thaliana clone 122798 mRNA, complete sequence Length = 1649 Score = 111 bits (56), Expect = 3e-21 Identities = 156/188 (82%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 22 ttttggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactg 81 ||||||||||| ||||| || ||||| ||| ||||| |||||||| |||| ||| | || Sbjct: 282 ttttggcatactttccgtgggactgg-aggtgatccatttggtgctgctactaagtattg 340 Query: 82 gccttgggaggatggcaccaattccttggccatggctaagagaagaatgaaagctcactt 141 ||||||||| ||||| || || || || | ||||||||||||||||||| |||| |||| Sbjct: 341 gccttgggaagatggtactaactctgtgtctatggctaagagaagaatgagagctaactt 400 Query: 142 cgagttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccc 201 |||||| || |||| ||||||||||| ||||||| || |||||||| ||||| || || Sbjct: 401 tgagttcttgaagaaacttggagttgattggtggtgttttcatgacagagacatagcacc 460 Query: 202 tgatggca 209 |||||||| Sbjct: 461 tgatggca 468 Score = 89.7 bits (45), Expect = 1e-14 Identities = 132/161 (81%) Strand = Plus / Plus Query: 290 ccattatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctact 349 ||||| |||||||| || || |||||| ||||||| |||||||||||||||| || || Sbjct: 549 ccattgtggggaacagctcagcttttcttgcatcctcgttacatgcacggaggagcgacc 608 Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggtt 409 ||| | || || ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 609 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 668 Query: 410 actcactacctaggcggtgagaactacgtattctggggtgg 450 || || ||| |||| ||||| |||||||| || |||||||| Sbjct: 669 acacattacttaggtggtgaaaactacgttttttggggtgg 709 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 834 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 876
>gb|AY084800.1| Arabidopsis thaliana clone 118282 mRNA, complete sequence Length = 1838 Score = 103 bits (52), Expect = 7e-19 Identities = 155/188 (82%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 22 ttttggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactg 81 ||||||||||| ||||| || ||||| ||| ||||| |||||||| |||| ||| | || Sbjct: 419 ttttggcatactttccgtgggactgg-aggtgatccatttggtgctgctactaagtattg 477 Query: 82 gccttgggaggatggcaccaattccttggccatggctaagagaagaatgaaagctcactt 141 ||||||||| ||||| || || || || | ||||||||||||||||||| |||| |||| Sbjct: 478 gccttgggaagatggtactaactctgtgtctatggctaagagaagaatgagagctaactt 537 Query: 142 cgagttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccc 201 |||||| || |||| ||||||||||| |||||| || |||||||| ||||| || || Sbjct: 538 tgagttcttgaagaaacttggagttgattagtggtgttttcatgacagagacatagcacc 597 Query: 202 tgatggca 209 |||||||| Sbjct: 598 tgatggca 605 Score = 89.7 bits (45), Expect = 1e-14 Identities = 132/161 (81%) Strand = Plus / Plus Query: 290 ccattatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctact 349 ||||| |||||||| || || |||||| ||||||| |||||||||||||||| || || Sbjct: 686 ccattgtggggaacagctcagcttttcttgcatcctcgttacatgcacggaggagcgacc 745 Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggtt 409 ||| | || || ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 746 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 805 Query: 410 actcactacctaggcggtgagaactacgtattctggggtgg 450 || || ||| |||| ||||| |||||||| || |||||||| Sbjct: 806 acacattacttaggtggtgaaaactacgttttttggggtgg 846 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 1048 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 1090
>dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2 Length = 83478 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Plus Query: 290 ccattatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctact 349 ||||| |||||||| || || |||||| ||||||| ||||| |||||||||| || || Sbjct: 79329 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 79388 Query: 350 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggtt 409 ||| | || || ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 79389 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 79448 Query: 410 actcactacctaggcggtgagaactacgtattctggggtgg 450 || || ||| |||| ||||| |||||||| || |||||||| Sbjct: 79449 acacattacttaggtggtgaaaactacgttttttggggtgg 79489 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 133 agctcacttcgagttcatggagaagcttggagttgaaaggtggtgcttccatgacaggga 192 |||| |||| |||||| || |||| ||||||||||| ||||||| || |||||||| || Sbjct: 78752 agctaactttgagttcttgaagaaacttggagttgattggtggtgttttcatgacagaga 78811 Query: 193 catcgcccctgatggca 209 ||| || |||||||||| Sbjct: 78812 catagcacctgatggca 78828 Score = 54.0 bits (27), Expect = 6e-04 Identities = 88/107 (82%), Gaps = 1/107 (0%) Strand = Plus / Plus Query: 22 ttttggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactg 81 ||||||||||| ||||| || ||||| ||| ||||| |||||||| |||| ||| | || Sbjct: 78558 ttttggcatactttccgtgggactgg-aggtgatccatttggtgctgctactaagtattg 78616 Query: 82 gccttgggaggatggcaccaattccttggccatggctaagagaagaa 128 ||||||||| ||||| || || || || | |||||||||||||||| Sbjct: 78617 gccttgggaagatggtactaactctgtgtctatggctaagagaagaa 78663 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 79691 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 79733
>emb|BX834102.1|CNS0A1T5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL9ZA09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1087 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 365 gtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttactcactacctaggc 424 ||||||||||| ||||||||||| ||||||||||| ||||||| || || ||| |||| Sbjct: 149 gtgtatgcttacgctgctgctcaggtgaagaaagccatggaggtaacacattacttaggt 208 Query: 425 ggtgagaactacgtattctggggtgg 450 ||||| |||||||| || |||||||| Sbjct: 209 ggtgaaaactacgttttttggggtgg 234
>emb|BX833713.1|CNS09Z3Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL72ZD05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 966 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 365 gtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttactcactacctaggc 424 ||||||||||| ||||||||||| ||||||||||| ||||||| || || ||| |||| Sbjct: 12 gtgtatgcttacgctgctgctcaggtgaagaaagccatggaggtaacacattacttaggt 71 Query: 425 ggtgagaactacgtattctggggtgg 450 ||||| |||||||| || |||||||| Sbjct: 72 ggtgaaaactacgttttttggggtgg 97 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 222 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 264
>gb|AC127169.13| Medicago truncatula clone mth2-36n3, complete sequence Length = 124554 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 365 gtgtatgcttatgctgctgctcaagtgaagaaagctttggaggt 408 |||||||| |||||||| ||||||||||||||||| |||||||| Sbjct: 87554 gtgtatgcatatgctgcggctcaagtgaagaaagccttggaggt 87511 Score = 44.1 bits (22), Expect = 0.58 Identities = 58/70 (82%) Strand = Plus / Minus Query: 59 tttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggccatggct 118 |||||||||||||| || | ||||| ||||| ||||| |||||||| || ||||||| Sbjct: 88436 tttggtgcacctaccaaatattggccatgggaagatggtaccaattcattaagcatggct 88377 Query: 119 aagagaagaa 128 || ||||||| Sbjct: 88376 aaaagaagaa 88367
>gb|U21678.1|TSU21678 Thermoanaerobacterium sp. xylose isomerase (xylA) gene, complete cds Length = 1320 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 422 ggcggtgagaactacgtattctggggtggaagagagggttaccaaactcttctcaatac 480 ||||| || |||||||||||||||||||||||||| || || |||| ||||||||||| Sbjct: 541 ggcggcgaaaactacgtattctggggtggaagagaaggatatgaaacacttctcaatac 599
>gb|J05650.1|CLOXYL C.thermosulfurogenes xylose isomerase (xylA) gene, complete cds Length = 1434 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 431 aactacgtattctggggtggaagagagggttaccaaactcttctcaataccgatatg 487 |||||||||||||||||||||||||| || || | || ||||||||||| |||||| Sbjct: 628 aactacgtattctggggtggaagagaaggatatgagacacttctcaatacagatatg 684
>gb|L09699.1|TEOXYLOSE Thermoanaerobacterium saccharolyticum (clone xylA) xylose isomerase mRNA, complete cds Length = 1601 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 431 aactacgtattctggggtggaagagagggttaccaaactcttctcaataccgatatg 487 ||||||||||| |||||||||||||| || ||| | || ||||||||||| |||||| Sbjct: 711 aactacgtattttggggtggaagagaagggtacgagacgcttctcaatacagatatg 767
>gb|AF282944.1|AF282944 Thermoanaerobacter yonseii xylose/glucose isomerase (xylA) gene, complete cds; and xylulose kinase (xylB) gene, partial cds Length = 2236 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 581 aagccacaagaaccaacaaagcatcagtatgact 614 |||||| |||| |||||||||||||||||||||| Sbjct: 884 aagccaaaagagccaacaaagcatcagtatgact 917 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Plus Query: 429 agaactacgtattctggggtggaagaga 456 ||||||||||||| |||||||||||||| Sbjct: 732 agaactacgtattttggggtggaagaga 759
>dbj|AK221134.1| Arabidopsis thaliana mRNA for xylose isomerase, partial cds, clone: RAFL22-92-O10 Length = 886 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 575 gagcctaagccacaagaaccaacaaagcatcagtatgactggg 617 ||||| ||||| |||||||| || ||||| ||||||||||||| Sbjct: 86 gagcccaagcctcaagaacccaccaagcaccagtatgactggg 128
>gb|AE012533.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 441 of 460 of the complete genome Length = 6066 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 422 ggcggtgagaactacgtattctgggg 447 ||||| |||||||||||||||||||| Sbjct: 4029 ggcggcgagaactacgtattctgggg 4054
>gb|AC003096.3| Arabidopsis thaliana chromosome 2 clone T29F13 map ve016, complete sequence Length = 69817 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 486 tgaagagggaacttgaacatttggct 511 |||||||| ||||||||||||||||| Sbjct: 63174 tgaagaggtaacttgaacatttggct 63149
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 422 ggcggtgagaactacgtattctgggg 447 ||||| |||||||||||||||||||| Sbjct: 4947533 ggcggcgagaactacgtattctgggg 4947558
>gb|AF020289.1|AF020289 Arabidopsis thaliana MgATP-energized glutathione S-conjugate pump (MRP2) gene, complete cds Length = 9650 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 486 tgaagagggaacttgaacatttggct 511 |||||||| ||||||||||||||||| Sbjct: 6229 tgaagaggtaacttgaacatttggct 6254
>gb|M91248.1|CLODXYISO C. thermosaccharolyticum D-xylose isomerase (xylA) gene, complete cds Length = 1488 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 431 aactacgtattctggggtggaagaga 456 ||||||||||||||||| |||||||| Sbjct: 685 aactacgtattctggggcggaagaga 710
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 aagaaagctttggaggttact 412 ||||||||||||||||||||| Sbjct: 177523 aagaaagctttggaggttact 177543
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 440 ttctggggtggaagagagggt 460 ||||||||||||||||||||| Sbjct: 2205509 ttctggggtggaagagagggt 2205489
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16 Length = 227214 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 gttgcggttcagcgtggcatt 23 ||||||||||||||||||||| Sbjct: 92453 gttgcggttcagcgtggcatt 92433
>emb|AL139074.2|CJ11168X1 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 1/6 Length = 314150 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 aagaaagctttggaggttact 412 ||||||||||||||||||||| Sbjct: 179494 aagaaagctttggaggttact 179514
>gb|U82478.1|BGU82478 Biomphalaria glabrata fibrinogen-related protein 4 (BgMFREP4) mRNA, partial cds Length = 1372 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 ctaagagaagaatgaaagct 136 |||||||||||||||||||| Sbjct: 1241 ctaagagaagaatgaaagct 1260
>gb|AC118747.5| Mus musculus chromosome 5, clone RP24-194J1, complete sequence Length = 166351 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 ctaagagaagaatgaaagct 136 |||||||||||||||||||| Sbjct: 102728 ctaagagaagaatgaaagct 102747
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 9.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 570 tgatagagcctaagccacaagaaccaacaaagcatcagta 609 |||||||||| |||||||| || || || ||||||||||| Sbjct: 3459542 tgatagagcccaagccacaggagccgaccaagcatcagta 3459581
>emb|CR955037.3| Pan troglodytes chromosome X BAC RP43-016I09, complete sequence Length = 201964 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 aacaaagcatcagtatgact 614 |||||||||||||||||||| Sbjct: 57010 aacaaagcatcagtatgact 57029
>gb|AC132302.3| Mus musculus BAC clone RP24-279N5 from chromosome 3, complete sequence Length = 157307 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 tttcttcaagctgctgttaa 534 |||||||||||||||||||| Sbjct: 95972 tttcttcaagctgctgttaa 95953
>gb|AC126428.3| Mus musculus BAC clone RP24-387B13 from chromosome 10, complete sequence Length = 225663 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aactggccttgggaggatgg 96 |||||||||||||||||||| Sbjct: 172825 aactggccttgggaggatgg 172844
>ref|XM_815454.1| Trypanosoma cruzi strain CL Brener transcription factor (Tc00.1047053507093.180) partial mRNA Length = 1809 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gaagaatgaaagctcacttc 142 |||||||||||||||||||| Sbjct: 810 gaagaatgaaagctcacttc 829
>gb|AC121961.2| Mus musculus BAC clone RP24-255E8 from 10, complete sequence Length = 162752 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aactggccttgggaggatgg 96 |||||||||||||||||||| Sbjct: 18131 aactggccttgggaggatgg 18150
>gb|AC149303.10| Medicago truncatula clone mth2-76a20, complete sequence Length = 141028 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 gaaacaaatgctaacttggatgag 244 |||||||||||||| ||||||||| Sbjct: 137351 gaaacaaatgctaagttggatgag 137328
>emb|AL163538.9| Human DNA sequence from clone RP11-323P14 on chromosome 13 Contains part of the WASF3 gene for the WAS protein family, member 3 (WASP family Verprolin-homologous protein 3 (SCAR3, Scar3, WAVE3, KIAA0900)) and a novel gene, complete sequence Length = 84193 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ccttgggaggatggcaccaa 102 |||||||||||||||||||| Sbjct: 46992 ccttgggaggatggcaccaa 47011
>emb|AL050403.16|HSDJ697P8 Human DNA sequence from clone RP4-697P8 on chromosome 20 Contains two novel genes and the FAT1P1 gene for FAT tumour suppressor homolog 1 (Drosophila) pseudogene 1, complete sequence Length = 144924 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ctgcacaacttttcatgcat 322 |||||||||||||||||||| Sbjct: 89157 ctgcacaacttttcatgcat 89138
>emb|AL008732.1|HS67M12 Human DNA sequence from clone RP1-67M12 on chromosome 6p22.1-22.3 Contains part of a novel gene, complete sequence Length = 103268 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 atggctaagagaagaatgaa 132 |||||||||||||||||||| Sbjct: 85998 atggctaagagaagaatgaa 85979
>gb|AC103688.4| Homo sapiens chromosome 8, clone CTD-3046C4, complete sequence Length = 211222 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ctgctgctcaagtgaagaaa 397 |||||||||||||||||||| Sbjct: 98256 ctgctgctcaagtgaagaaa 98237
>emb|CR855279.1| Human DNA sequence from clone XX-NCIH2171_16D15, complete sequence Length = 122131 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ctgctgctcaagtgaagaaa 397 |||||||||||||||||||| Sbjct: 78326 ctgctgctcaagtgaagaaa 78307
>gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, complete sequence Length = 210003 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 tttcttcaagctgctgttaa 534 |||||||||||||||||||| Sbjct: 177195 tttcttcaagctgctgttaa 177176
>emb|BX510928.5| Zebrafish DNA sequence from clone DKEY-190G11 in linkage group 8, complete sequence Length = 197947 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 ttaccaaactcttctcaata 479 |||||||||||||||||||| Sbjct: 187101 ttaccaaactcttctcaata 187082
>gb|AC079177.21| Homo sapiens Xp BAC RP11-147B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155533 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 aacaaagcatcagtatgact 614 |||||||||||||||||||| Sbjct: 68962 aacaaagcatcagtatgact 68943
>gb|AE010214.1| Pyrococcus furiosus DSM 3638, section 89 of 173 of the complete genome Length = 11615 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ggagaagcttggagttgaaa 170 |||||||||||||||||||| Sbjct: 11261 ggagaagcttggagttgaaa 11242
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgtatgcttatgctgctgct 385 |||||||||||||||||||| Sbjct: 23453108 tgtatgcttatgctgctgct 23453127
>gb|AC096728.3| Homo sapiens BAC clone RP11-53C16 from 4, complete sequence Length = 82696 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 483 atatgaagagggaacttgaacatt 506 |||||||||||||| ||||||||| Sbjct: 12087 atatgaagagggaaattgaacatt 12064
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgtatgcttatgctgctgct 385 |||||||||||||||||||| Sbjct: 18791 tgtatgcttatgctgctgct 18810
>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1653_F07, complete sequence Length = 110109 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgtatgcttatgctgctgct 385 |||||||||||||||||||| Sbjct: 71783 tgtatgcttatgctgctgct 71802
>dbj|AP003783.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-598K3, complete sequence Length = 172763 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tggccatggctaagagaaga 127 |||||||||||||||||||| Sbjct: 75396 tggccatggctaagagaaga 75377
>gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence Length = 122469 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 agctggcaaagcaactccag 271 |||||||||||||||||||| Sbjct: 103285 agctggcaaagcaactccag 103304
>dbj|AP001648.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736L3, complete sequence Length = 166013 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tggccatggctaagagaaga 127 |||||||||||||||||||| Sbjct: 125294 tggccatggctaagagaaga 125275
>gb|AC109606.11| Mus musculus strain C57BL/6J chromosome 5 clone rp23-113m20, complete sequence Length = 210959 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 436 cgtattctggggtggaagagaggg 459 |||||||| ||||||||||||||| Sbjct: 115836 cgtattcttgggtggaagagaggg 115859
>dbj|D00756.1|CLOXYLA Clostridium thermohydrosulfuricum xylA gene for D-xylose ketol-isomerase, complete cds Length = 1476 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 429 agaactacgtattctggggtggaagaga 456 ||||||| ||||| |||||||||||||| Sbjct: 653 agaactatgtattttggggtggaagaga 680
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome Length = 1860725 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 433 ctacgtattctggggtggaagaga 456 |||||| ||||||||||||||||| Sbjct: 1654011 ctacgtcttctggggtggaagaga 1654034
>gb|AF001974.1|AF001974 Thermoanaerobacter ethanolicus putative TrkG gene, partial cds, and putative TrkA, xylose isomerase (xylA) and xylulose kinase (xylB) genes, complete cds Length = 5271 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 429 agaactacgtattctggggtggaagaga 456 ||||||| ||||| |||||||||||||| Sbjct: 2615 agaactatgtattttggggtggaagaga 2642
>gb|L38994.1|TMOXYLA Thermotoga neapolitana 5068 xylose isomerase (xylA) gene, complete cds Length = 2522 Score = 40.1 bits (20), Expect = 9.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 434 tacgtattctggggtggaagagagggttaccaaactcttctcaa 477 ||||| ||||||||||||||||| || ||| |||| || ||||| Sbjct: 1168 tacgtcttctggggtggaagagaaggatacgaaacactcctcaa 1211 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,797,831 Number of Sequences: 3902068 Number of extensions: 5797831 Number of successful extensions: 100114 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99810 Number of HSP's gapped (non-prelim): 278 length of query: 660 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 637 effective length of database: 17,143,297,704 effective search space: 10920280637448 effective search space used: 10920280637448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
