ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RLA3_MAIZE (O24413) 60S acidic ribosomal protein P3 (P1/P2-like)... 102 7e-22
2RLA3_ORYSA (P56724) 60S acidic ribosomal protein P3 (P1/P2-like) 93 7e-19
3OR1D5_HUMAN (P58170) Olfactory receptor 1D5 (Olfactory receptor ... 29 9.4
4OR1D4_HUMAN (P47884) Olfactory receptor 1D4 (Olfactory receptor ... 29 9.4

>RLA3_MAIZE (O24413) 60S acidic ribosomal protein P3 (P1/P2-like) (P3A)|
          Length = 119

 Score =  102 bits (255), Expect = 7e-22
 Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
 Frame = +3

Query: 3   GVFTFVCRDSGAXWSAKQHKGELEASAATPYDLQRQLVSAACAEDKSGGVQSSFTMVSPN 182
           GV+TFVCR++G  W+AKQH GE+EASAATPY+LQR+LV+AA A D   GVQSSF+MV+P+
Sbjct: 1   GVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTPS 60

Query: 183 SAIFQV-VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLGFSLFD 356
           SA+FQV V                                          DD+GFSLFD
Sbjct: 61  SAVFQVIVGAVGGGAMMVSGGGGGGAAASGGAAAEAPKEEKKEEEKEESDDDMGFSLFD 119



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>RLA3_ORYSA (P56724) 60S acidic ribosomal protein P3 (P1/P2-like)|
          Length = 118

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 42/67 (62%), Positives = 54/67 (80%)
 Frame = +3

Query: 3   GVFTFVCRDSGAXWSAKQHKGELEASAATPYDLQRQLVSAACAEDKSGGVQSSFTMVSPN 182
           GVF+FVC+  G  W+AKQH+G+LEASA++ YDLQR +V  A + D SGGVQSSF++VSP 
Sbjct: 1   GVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRNVVQTALSADSSGGVQSSFSLVSPT 60

Query: 183 SAIFQVV 203
           SA+F VV
Sbjct: 61  SAVFVVV 67



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>OR1D5_HUMAN (P58170) Olfactory receptor 1D5 (Olfactory receptor 17-31)|
           (OR17-31)
          Length = 312

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 458 VTFCSCEDLVMLFCSFDILLWL 523
           VTFC   ++  LFC   ILLWL
Sbjct: 166 VTFCGPREIHYLFCDMYILLWL 187



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>OR1D4_HUMAN (P47884) Olfactory receptor 1D4 (Olfactory receptor 17-30)|
           (OR17-30)
          Length = 311

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 458 VTFCSCEDLVMLFCSFDILLWL 523
           VTFC   ++  LFC   ILLWL
Sbjct: 166 VTFCGPREIHYLFCDMYILLWL 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,890,468
Number of Sequences: 219361
Number of extensions: 770948
Number of successful extensions: 1711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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