Clone Name | bags9i01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK099198.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115B14, full insert sequence Length = 1057 Score = 527 bits (266), Expect = e-146 Identities = 466/532 (87%), Gaps = 1/532 (0%) Strand = Plus / Plus Query: 1 gtcactgcctttggnnccgtccttcatgttgtatcgaccgctcttctagggnataactgc 60 |||||||| ||||| ||||||||||||||| || || |||||||| ||| |||||||| Sbjct: 256 gtcactgcatttggaggcgtccttcatgttgtttccactgctcttcttggg-ataactgc 314 Query: 61 agttactatggcaaatactatagcgggcgaggaaacagtgcataaacttgcctcgctgtt 120 ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct: 315 tgttactatggcaaatactatagcaggcgaggaaacagtgcataaacttgcatcactgtt 374 Query: 121 gctaatatttcttggagcaggttacattctgttgtttgtgttaggaaaagggggtcatag 180 ||| || ||||||| | | |||| || ||| |||||| | |||||||| || ||| | Sbjct: 375 gctgattgttcttggtggaagttatatcctgctgtttgcactgggaaaaggtggccatgg 434 Query: 181 ccatgctcataatcatccaatggagaagatggcagtcgctggtcttgtacttgtaccagc 240 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct: 435 ccatgctcataatcatccaatggagaagatggcagttgcaggtcttgtacttgtacctgc 494 Query: 241 attatcaccctgtgcaactactcttccagtgtttcttgctgttggcaactcatcctcgat 300 |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 495 attatcaccctgtgcaacaactcttccagtgtttcttgctgttggcaattcatcctccat 554 Query: 301 gatgtttcttgcaatcattgtacttctcttcagtaccatcacagtgatgacgtccctggt 360 |||| | ||||| |||||||| || ||||| |||||||||||||||||||| ||| |||| Sbjct: 555 gatgatccttgcgatcattgtgctcctctttagtaccatcacagtgatgacatccttggt 614 Query: 361 ggccctctcattttatggtgctagccagatcaagtttcactgggtggaacgctatgacaa 420 |||||||||||| || |||||||||||||| ||||| |||||||||||||| || ||||| Sbjct: 615 ggccctctcattctacggtgctagccagattaagttccactgggtggaacgttacgacaa 674 Query: 421 ggtcctagttggctcggtgctgtgccttgttggggttctgacatatgtgttccatcacca 480 | |||| || |||||||| |||||||| ||||||||| ||||||| || ||||||||||| Sbjct: 675 gatccttgtcggctcggtcctgtgcctcgttggggttttgacatacgtattccatcacca 734 Query: 481 tgatggtgaccagcattctctccatgcacacgtgcataggaaacttgtgggt 532 ||| || ||| | || |||||||||| ||||||||| ||||||| |||||| Sbjct: 735 tgacggcgacgaacactctctccatgaacacgtgcaccggaaactcgtgggt 786
>dbj|AK061133.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A12, full insert sequence Length = 1132 Score = 527 bits (266), Expect = e-146 Identities = 466/532 (87%), Gaps = 1/532 (0%) Strand = Plus / Plus Query: 1 gtcactgcctttggnnccgtccttcatgttgtatcgaccgctcttctagggnataactgc 60 |||||||| ||||| ||||||||||||||| || || |||||||| ||| |||||||| Sbjct: 256 gtcactgcatttggaggcgtccttcatgttgtttccactgctcttcttggg-ataactgc 314 Query: 61 agttactatggcaaatactatagcgggcgaggaaacagtgcataaacttgcctcgctgtt 120 ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct: 315 tgttactatggcaaatactatagcaggcgaggaaacagtgcataaacttgcatcactgtt 374 Query: 121 gctaatatttcttggagcaggttacattctgttgtttgtgttaggaaaagggggtcatag 180 ||| || ||||||| | | |||| || ||| |||||| | |||||||| || ||| | Sbjct: 375 gctgattgttcttggtggaagttatatcctgctgtttgcactgggaaaaggtggccatgg 434 Query: 181 ccatgctcataatcatccaatggagaagatggcagtcgctggtcttgtacttgtaccagc 240 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct: 435 ccatgctcataatcatccaatggagaagatggcagttgcaggtcttgtacttgtacctgc 494 Query: 241 attatcaccctgtgcaactactcttccagtgtttcttgctgttggcaactcatcctcgat 300 |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 495 attatcaccctgtgcaacaactcttccagtgtttcttgctgttggcaattcatcctccat 554 Query: 301 gatgtttcttgcaatcattgtacttctcttcagtaccatcacagtgatgacgtccctggt 360 |||| | ||||| |||||||| || ||||| |||||||||||||||||||| ||| |||| Sbjct: 555 gatgatccttgcgatcattgtgctcctctttagtaccatcacagtgatgacatccttggt 614 Query: 361 ggccctctcattttatggtgctagccagatcaagtttcactgggtggaacgctatgacaa 420 |||||||||||| || |||||||||||||| ||||| |||||||||||||| || ||||| Sbjct: 615 ggccctctcattctacggtgctagccagattaagttccactgggtggaacgttacgacaa 674 Query: 421 ggtcctagttggctcggtgctgtgccttgttggggttctgacatatgtgttccatcacca 480 | |||| || |||||||| |||||||| ||||||||| ||||||| || ||||||||||| Sbjct: 675 gatccttgtcggctcggtcctgtgcctcgttggggttttgacatacgtattccatcacca 734 Query: 481 tgatggtgaccagcattctctccatgcacacgtgcataggaaacttgtgggt 532 ||| || ||| | || |||||||||| ||||||||| ||||||| |||||| Sbjct: 735 tgacggcgacgaacactctctccatgaacacgtgcaccggaaactcgtgggt 786
>ref|NM_188103.1| Oryza sativa (japonica cultivar-group), Ozsa8535 predicted mRNA Length = 1425 Score = 521 bits (263), Expect = e-145 Identities = 460/525 (87%), Gaps = 1/525 (0%) Strand = Plus / Plus Query: 1 gtcactgcctttggnnccgtccttcatgttgtatcgaccgctcttctagggnataactgc 60 |||||||| ||||| ||||||||||||||| || || |||||||| ||| |||||||| Sbjct: 289 gtcactgcatttggaggcgtccttcatgttgtttccactgctcttcttggg-ataactgc 347 Query: 61 agttactatggcaaatactatagcgggcgaggaaacagtgcataaacttgcctcgctgtt 120 ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct: 348 tgttactatggcaaatactatagcaggcgaggaaacagtgcataaacttgcatcactgtt 407 Query: 121 gctaatatttcttggagcaggttacattctgttgtttgtgttaggaaaagggggtcatag 180 ||| || ||||||| | | |||| || ||| |||||| | |||||||| || ||| | Sbjct: 408 gctgattgttcttggtggaagttatatcctgctgtttgcactgggaaaaggtggccatgg 467 Query: 181 ccatgctcataatcatccaatggagaagatggcagtcgctggtcttgtacttgtaccagc 240 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct: 468 ccatgctcataatcatccaatggagaagatggcagttgcaggtcttgtacttgtacctgc 527 Query: 241 attatcaccctgtgcaactactcttccagtgtttcttgctgttggcaactcatcctcgat 300 |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 528 attatcaccctgtgcaacaactcttccagtgtttcttgctgttggcaattcatcctccat 587 Query: 301 gatgtttcttgcaatcattgtacttctcttcagtaccatcacagtgatgacgtccctggt 360 |||| | ||||| |||||||| || ||||| |||||||||||||||||||| ||| |||| Sbjct: 588 gatgatccttgcgatcattgtgctcctctttagtaccatcacagtgatgacatccttggt 647 Query: 361 ggccctctcattttatggtgctagccagatcaagtttcactgggtggaacgctatgacaa 420 |||||||||||| || |||||||||||||| ||||| |||||||||||||| || ||||| Sbjct: 648 ggccctctcattctacggtgctagccagattaagttccactgggtggaacgttacgacaa 707 Query: 421 ggtcctagttggctcggtgctgtgccttgttggggttctgacatatgtgttccatcacca 480 | |||| || |||||||| |||||||| ||||||||| ||||||| || ||||||||||| Sbjct: 708 gatccttgtcggctcggtcctgtgcctcgttggggttttgacatacgtattccatcacca 767 Query: 481 tgatggtgaccagcattctctccatgcacacgtgcataggaaact 525 ||| || ||| | || |||||||||| ||||||||| ||||||| Sbjct: 768 tgacggcgacgaacactctctccatgaacacgtgcaccggaaact 812
>gb|AY110867.1| Zea mays CL34559_1 mRNA sequence Length = 652 Score = 468 bits (236), Expect = e-128 Identities = 407/468 (86%), Gaps = 1/468 (0%) Strand = Plus / Plus Query: 22 cttcatgttgtatcgaccgctcttctagggnataactgcagttactatggcaaatactat 81 ||||||||||| || || |||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 27 cttcatgttgtttctacggctcttcttggg-ataactgcagttactatggcaaatactat 85 Query: 82 agcgggcgaggaaacagtgcataaacttgcctcgctgttgctaatatttcttggagcagg 141 ||| ||||| |||||||||||||||||||||||||||||||| | ||||||||| | Sbjct: 86 agctggcgaagaaacagtgcataaacttgcctcgctgttgctgannnnncttggagcaag 145 Query: 142 ttacattctgttgtttgtgttaggaaaagggggtcatagccatgctcataatcatccaat 201 ||| || || ||||||| ||||||||||| |||||||||||||| |||||||||||||| Sbjct: 146 ttatatcctcttgtttgccttaggaaaaggtggtcatagccatgcccataatcatccaat 205 Query: 202 ggagaagatggcagtcgctggtcttgtacttgtaccagcattatcaccctgtgcaactac 261 || |||||||||| ||||||||||||||||| ||||||||||| |||||||| || Sbjct: 206 ggnnnnnntggcagtcgccggtcttgtacttgtacctgcattatcaccttgtgcaacaac 265 Query: 262 tcttccagtgtttcttgctgttggcaactcatcctcgatgatgtttcttgcaatcattgt 321 |||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct: 266 tcttccagnnnnncttgctgttggcaactcttcctcaatgatgattcttgcaatcattgt 325 Query: 322 acttctcttcagtaccatcacagtgatgacgtccctggtggccctctcattttatggtgc 381 || |||||||| ||||||||||||||||| ||| |||||||||| ||||| || ||||| Sbjct: 326 gctcctcttcagcaccatcacagtgatgacatccttggtggccctttcattctacggtgc 385 Query: 382 tagccagatcaagtttcactgggtggaacgctatgacaaggtcctagttggctcggtgct 441 ||||||||||||||| ||||||||||| || || |||||| |||| || ||| ||||||| Sbjct: 386 tagccagatcaagttccactgggtggagcgttacgacaagatcctcgtcggcacggtgct 445 Query: 442 gtgccttgttggggttctgacatatgtgttccatcaccatgatggtga 489 |||||||||||| || | ||||||||||||||||| || |||||||| Sbjct: 446 gtgccttgttggagtcttaacatatgtgttccatcatcacgatggtga 493
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 327 bits (165), Expect = 3e-86 Identities = 277/313 (88%), Gaps = 1/313 (0%) Strand = Plus / Plus Query: 18 cgtccttcatgttgtatcgaccgctcttctagggnataactgcagttactatggcaaata 77 ||||||||||||||| || || |||||||| ||| |||||||| |||||||||||||||| Sbjct: 9750796 cgtccttcatgttgtttccactgctcttcttggg-ataactgctgttactatggcaaata 9750854 Query: 78 ctatagcgggcgaggaaacagtgcataaacttgcctcgctgttgctaatatttcttggag 137 ||||||| |||||||||||||||||||||||||| || |||||||| || ||||||| | Sbjct: 9750855 ctatagcaggcgaggaaacagtgcataaacttgcatcactgttgctgattgttcttggtg 9750914 Query: 138 caggttacattctgttgtttgtgttaggaaaagggggtcatagccatgctcataatcatc 197 | |||| || ||| |||||| | |||||||| || ||| |||||||||||||||||| Sbjct: 9750915 gaagttatatcctgctgtttgcactgggaaaaggtggccatggccatgctcataatcatc 9750974 Query: 198 caatggagaagatggcagtcgctggtcttgtacttgtaccagcattatcaccctgtgcaa 257 ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| Sbjct: 9750975 caatggagaagatggcagttgcaggtcttgtacttgtacctgcattatcaccctgtgcaa 9751034 Query: 258 ctactcttccagtgtttcttgctgttggcaactcatcctcgatgatgtttcttgcaatca 317 | ||||||||||||||||||||||||||||| |||||||| |||||| | ||||| |||| Sbjct: 9751035 caactcttccagtgtttcttgctgttggcaattcatcctccatgatgatccttgcgatca 9751094 Query: 318 ttgtacttctctt 330 |||| || ||||| Sbjct: 9751095 ttgtgctcctctt 9751107 Score = 202 bits (102), Expect = 1e-48 Identities = 177/202 (87%) Strand = Plus / Plus Query: 331 cagtaccatcacagtgatgacgtccctggtggccctctcattttatggtgctagccagat 390 ||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||| Sbjct: 9752168 cagtaccatcacagtgatgacatccttggtggccctctcattctacggtgctagccagat 9752227 Query: 391 caagtttcactgggtggaacgctatgacaaggtcctagttggctcggtgctgtgccttgt 450 ||||| |||||||||||||| || |||||| |||| || |||||||| |||||||| || Sbjct: 9752228 taagttccactgggtggaacgttacgacaagatccttgtcggctcggtcctgtgcctcgt 9752287 Query: 451 tggggttctgacatatgtgttccatcaccatgatggtgaccagcattctctccatgcaca 510 ||||||| ||||||| || |||||||||||||| || ||| | || |||||||||| ||| Sbjct: 9752288 tggggttttgacatacgtattccatcaccatgacggcgacgaacactctctccatgaaca 9752347 Query: 511 cgtgcataggaaacttgtgggt 532 |||||| ||||||| |||||| Sbjct: 9752348 cgtgcaccggaaactcgtgggt 9752369 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gtgttccatcaccatgatgg 486 |||||||||||||||||||| Sbjct: 2249315 gtgttccatcaccatgatgg 2249296
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 327 bits (165), Expect = 3e-86 Identities = 277/313 (88%), Gaps = 1/313 (0%) Strand = Plus / Plus Query: 18 cgtccttcatgttgtatcgaccgctcttctagggnataactgcagttactatggcaaata 77 ||||||||||||||| || || |||||||| ||| |||||||| |||||||||||||||| Sbjct: 15046 cgtccttcatgttgtttccactgctcttcttggg-ataactgctgttactatggcaaata 15104 Query: 78 ctatagcgggcgaggaaacagtgcataaacttgcctcgctgttgctaatatttcttggag 137 ||||||| |||||||||||||||||||||||||| || |||||||| || ||||||| | Sbjct: 15105 ctatagcaggcgaggaaacagtgcataaacttgcatcactgttgctgattgttcttggtg 15164 Query: 138 caggttacattctgttgtttgtgttaggaaaagggggtcatagccatgctcataatcatc 197 | |||| || ||| |||||| | |||||||| || ||| |||||||||||||||||| Sbjct: 15165 gaagttatatcctgctgtttgcactgggaaaaggtggccatggccatgctcataatcatc 15224 Query: 198 caatggagaagatggcagtcgctggtcttgtacttgtaccagcattatcaccctgtgcaa 257 ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| Sbjct: 15225 caatggagaagatggcagttgcaggtcttgtacttgtacctgcattatcaccctgtgcaa 15284 Query: 258 ctactcttccagtgtttcttgctgttggcaactcatcctcgatgatgtttcttgcaatca 317 | ||||||||||||||||||||||||||||| |||||||| |||||| | ||||| |||| Sbjct: 15285 caactcttccagtgtttcttgctgttggcaattcatcctccatgatgatccttgcgatca 15344 Query: 318 ttgtacttctctt 330 |||| || ||||| Sbjct: 15345 ttgtgctcctctt 15357 Score = 202 bits (102), Expect = 1e-48 Identities = 177/202 (87%) Strand = Plus / Plus Query: 331 cagtaccatcacagtgatgacgtccctggtggccctctcattttatggtgctagccagat 390 ||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||| Sbjct: 16418 cagtaccatcacagtgatgacatccttggtggccctctcattctacggtgctagccagat 16477 Query: 391 caagtttcactgggtggaacgctatgacaaggtcctagttggctcggtgctgtgccttgt 450 ||||| |||||||||||||| || |||||| |||| || |||||||| |||||||| || Sbjct: 16478 taagttccactgggtggaacgttacgacaagatccttgtcggctcggtcctgtgcctcgt 16537 Query: 451 tggggttctgacatatgtgttccatcaccatgatggtgaccagcattctctccatgcaca 510 ||||||| ||||||| || |||||||||||||| || ||| | || |||||||||| ||| Sbjct: 16538 tggggttttgacatacgtattccatcaccatgacggcgacgaacactctctccatgaaca 16597 Query: 511 cgtgcataggaaacttgtgggt 532 |||||| ||||||| |||||| Sbjct: 16598 cgtgcaccggaaactcgtgggt 16619
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 327 bits (165), Expect = 3e-86 Identities = 277/313 (88%), Gaps = 1/313 (0%) Strand = Plus / Plus Query: 18 cgtccttcatgttgtatcgaccgctcttctagggnataactgcagttactatggcaaata 77 ||||||||||||||| || || |||||||| ||| |||||||| |||||||||||||||| Sbjct: 188799 cgtccttcatgttgtttccactgctcttcttggg-ataactgctgttactatggcaaata 188857 Query: 78 ctatagcgggcgaggaaacagtgcataaacttgcctcgctgttgctaatatttcttggag 137 ||||||| |||||||||||||||||||||||||| || |||||||| || ||||||| | Sbjct: 188858 ctatagcaggcgaggaaacagtgcataaacttgcatcactgttgctgattgttcttggtg 188917 Query: 138 caggttacattctgttgtttgtgttaggaaaagggggtcatagccatgctcataatcatc 197 | |||| || ||| |||||| | |||||||| || ||| |||||||||||||||||| Sbjct: 188918 gaagttatatcctgctgtttgcactgggaaaaggtggccatggccatgctcataatcatc 188977 Query: 198 caatggagaagatggcagtcgctggtcttgtacttgtaccagcattatcaccctgtgcaa 257 ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| Sbjct: 188978 caatggagaagatggcagttgcaggtcttgtacttgtacctgcattatcaccctgtgcaa 189037 Query: 258 ctactcttccagtgtttcttgctgttggcaactcatcctcgatgatgtttcttgcaatca 317 | ||||||||||||||||||||||||||||| |||||||| |||||| | ||||| |||| Sbjct: 189038 caactcttccagtgtttcttgctgttggcaattcatcctccatgatgatccttgcgatca 189097 Query: 318 ttgtacttctctt 330 |||| || ||||| Sbjct: 189098 ttgtgctcctctt 189110
>gb|AC091627.2| Solanum demissum chromosome 11 BAC PGEC513 genomic sequence, complete sequence Length = 77821 Score = 93.7 bits (47), Expect = 7e-16 Identities = 128/155 (82%) Strand = Plus / Plus Query: 164 ggaaaagggggtcatagccatgctcataatcatccaatggagaagatggcagtcgctggt 223 ||||| || ||||| |||||| | || ||||| || |||||||| ||||| || || || Sbjct: 15953 ggaaagggtggtcacagccattcacacaatcaacccatggagaaaatggccgtagcaggg 16012 Query: 224 cttgtacttgtaccagcattatcaccctgtgcaactactcttccagtgtttcttgctgtt 283 ||||| ||||| || ||||| || || |||||||| ||||| || ||||||||||||||| Sbjct: 16013 cttgtccttgttcctgcattgtctccttgtgcaaccactctccctgtgtttcttgctgtt 16072 Query: 284 ggcaactcatcctcgatgatgtttcttgcaatcat 318 || ||||||||||| |||||| | ||||| ||||| Sbjct: 16073 ggaaactcatcctccatgatggtgcttgccatcat 16107 Score = 63.9 bits (32), Expect = 6e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 335 accatcacagtgatgacgtccctggtggccctctcattttatggtgctagccagatcaag 394 ||||| || |||||||| || |||||||| || |||||||| ||||| || || ||||| Sbjct: 16923 accataactgtgatgacctcactggtggctctatcattttacggtgcaagtcaactcaag 16982 Query: 395 tttcactgggtggaacgctatgacaaggtcct 426 || |||||||||||| | ||||||||| |||| Sbjct: 16983 ttccactgggtggaatgttatgacaagctcct 17014
>ref|NM_122115.1| Arabidopsis thaliana unknown protein AT5G21070 mRNA, complete cds Length = 1137 Score = 77.8 bits (39), Expect = 4e-11 Identities = 177/223 (79%) Strand = Plus / Plus Query: 186 ctcataatcatccaatggagaagatggcagtcgctggtcttgtacttgtaccagcattat 245 ||||||| || || |||||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct: 512 ctcataaccaacccatggagaaaatggctgttgctggacttgtccttgttcctgcattat 571 Query: 246 caccctgtgcaactactcttccagtgtttcttgctgttggcaactcatcctcgatgatgt 305 | || |||||||| ||||| || || || || |||||||| || || || |||||| Sbjct: 572 ctccttgtgcaacaactctcccggttttcctcgctgttggaaattccaagtccatgatgg 631 Query: 306 ttcttgcaatcattgtacttctcttcagtaccatcacagtgatgacgtccctggtggccc 365 |||| || ||||| || || |||||||| ||||| || ||||| || ||||| || | Sbjct: 632 ttctcgccatcatagttctgctcttcagcaccatattggttatgacatcgctggttgctc 691 Query: 366 tctcattttatggtgctagccagatcaagtttcactgggtgga 408 | || || |||||||| |||||| ||||||||||||||||||| Sbjct: 692 tatcgttctatggtgcaagccagctcaagtttcactgggtgga 734
>gb|AY079115.1| Arabidopsis thaliana AT5g21070/T10F18_100 mRNA, complete cds Length = 678 Score = 77.8 bits (39), Expect = 4e-11 Identities = 177/223 (79%) Strand = Plus / Plus Query: 186 ctcataatcatccaatggagaagatggcagtcgctggtcttgtacttgtaccagcattat 245 ||||||| || || |||||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct: 329 ctcataaccaacccatggagaaaatggctgttgctggacttgtccttgttcctgcattat 388 Query: 246 caccctgtgcaactactcttccagtgtttcttgctgttggcaactcatcctcgatgatgt 305 | || |||||||| ||||| || || || || |||||||| || || || |||||| Sbjct: 389 ctccttgtgcaacaactctcccggttttcctcgctgttggaaattccaagtccatgatgg 448 Query: 306 ttcttgcaatcattgtacttctcttcagtaccatcacagtgatgacgtccctggtggccc 365 |||| || ||||| || || |||||||| ||||| || ||||| || ||||| || | Sbjct: 449 ttctcgccatcatagttctgctcttcagcaccatattggttatgacatcgctggttgctc 508 Query: 366 tctcattttatggtgctagccagatcaagtttcactgggtgga 408 | || || |||||||| |||||| ||||||||||||||||||| Sbjct: 509 tatcgttctatggtgcaagccagctcaagtttcactgggtgga 551
>gb|AY054240.1| Arabidopsis thaliana AT5g21070/T10F18_100 mRNA, complete cds Length = 1040 Score = 77.8 bits (39), Expect = 4e-11 Identities = 177/223 (79%) Strand = Plus / Plus Query: 186 ctcataatcatccaatggagaagatggcagtcgctggtcttgtacttgtaccagcattat 245 ||||||| || || |||||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct: 510 ctcataaccaacccatggagaaaatggctgttgctggacttgtccttgttcctgcattat 569 Query: 246 caccctgtgcaactactcttccagtgtttcttgctgttggcaactcatcctcgatgatgt 305 | || |||||||| ||||| || || || || |||||||| || || || |||||| Sbjct: 570 ctccttgtgcaacaactctcccggttttcctcgctgttggaaattccaagtccatgatgg 629 Query: 306 ttcttgcaatcattgtacttctcttcagtaccatcacagtgatgacgtccctggtggccc 365 |||| || ||||| || || |||||||| ||||| || ||||| || ||||| || | Sbjct: 630 ttctcgccatcatagttctgctcttcagcaccatattggttatgacatcgctggttgctc 689 Query: 366 tctcattttatggtgctagccagatcaagtttcactgggtgga 408 | || || |||||||| |||||| ||||||||||||||||||| Sbjct: 690 tatcgttctatggtgcaagccagctcaagtttcactgggtgga 732
>emb|BX829568.1|CNS0A04I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZF03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1092 Score = 77.8 bits (39), Expect = 4e-11 Identities = 177/223 (79%) Strand = Plus / Plus Query: 186 ctcataatcatccaatggagaagatggcagtcgctggtcttgtacttgtaccagcattat 245 ||||||| || || |||||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct: 494 ctcataaccaacccatggagaaaatggctgttgctggacttgtccttgttcctgcattat 553 Query: 246 caccctgtgcaactactcttccagtgtttcttgctgttggcaactcatcctcgatgatgt 305 | || |||||||| ||||| || || || || |||||||| || || || |||||| Sbjct: 554 ctccttgtgcaacaactctcccggttttcctcgctgttggaaattccaagtccatgatgg 613 Query: 306 ttcttgcaatcattgtacttctcttcagtaccatcacagtgatgacgtccctggtggccc 365 |||| || ||||| || || |||||||| ||||| || ||||| || ||||| || | Sbjct: 614 ttctcgccatcatagttctgctcttcagcaccatattggttatgacatcgctggttgctc 673 Query: 366 tctcattttatggtgctagccagatcaagtttcactgggtgga 408 | || || |||||||| |||||| ||||||||||||||||||| Sbjct: 674 tatcgttctatggtgcaagccagctcaagtttcactgggtgga 716
>gb|AY087593.1| Arabidopsis thaliana clone 3689 mRNA, complete sequence Length = 1136 Score = 77.8 bits (39), Expect = 4e-11 Identities = 177/223 (79%) Strand = Plus / Plus Query: 186 ctcataatcatccaatggagaagatggcagtcgctggtcttgtacttgtaccagcattat 245 ||||||| || || |||||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct: 511 ctcataaccaacccatggagaaaatggctgttgctggacttgtccttgttcctgcattat 570 Query: 246 caccctgtgcaactactcttccagtgtttcttgctgttggcaactcatcctcgatgatgt 305 | || |||||||| ||||| || || || || |||||||| || || || |||||| Sbjct: 571 ctccttgtgcaacaactctcccggttttcctcgctgttggaaattccaagtccatgatgg 630 Query: 306 ttcttgcaatcattgtacttctcttcagtaccatcacagtgatgacgtccctggtggccc 365 |||| || ||||| || || |||||||| ||||| || ||||| || ||||| || | Sbjct: 631 ttctcgccatcatagttctgctcttcagcaccatattggttatgacatcgctggttgctc 690 Query: 366 tctcattttatggtgctagccagatcaagtttcactgggtgga 408 | || || |||||||| |||||| ||||||||||||||||||| Sbjct: 691 tatcgttctatggtgcaagccagctcaagtttcactgggtgga 733
>gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome V, complete sequence Length = 84413 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 374 tatggtgctagccagatcaagtttcactgggtgga 408 |||||||| |||||| ||||||||||||||||||| Sbjct: 52693 tatggtgcaagccagctcaagtttcactgggtgga 52659
>emb|CR931734.2| Medicago truncatula chromosome 5 clone mth2-62m24, COMPLETE SEQUENCE Length = 88409 Score = 52.0 bits (26), Expect = 0.002 Identities = 98/122 (80%) Strand = Plus / Plus Query: 200 atggagaagatggcagtcgctggtcttgtacttgtaccagcattatcaccctgtgcaact 259 |||||||| ||||| || || || ||| | ||||| || ||||| || || ||||| || Sbjct: 81208 atggagaaaatggctgtagccgggcttattcttgttcctgcattgtctccttgtgctaca 81267 Query: 260 actcttccagtgtttcttgctgttggcaactcatcctcgatgatgtttcttgcaatcatt 319 || |||||||| |||||||||||||| || ||||| || |||||| | || || |||||| Sbjct: 81268 acacttccagtatttcttgctgttggaaattcatcttccatgatggtgctcgccatcatt 81327 Query: 320 gt 321 || Sbjct: 81328 gt 81329
>gb|AC112506.5| Homo sapiens 3 BAC RP11-286P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115279 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 ttgtacttctcttcagtaccat 339 |||||||||||||||||||||| Sbjct: 29472 ttgtacttctcttcagtaccat 29451
>gb|AC012215.11| Homo sapiens chromosome , clone RP11-345N15, complete sequence Length = 210723 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 263 cttccagtgtttcttgctgttg 284 |||||||||||||||||||||| Sbjct: 166525 cttccagtgtttcttgctgttg 166504
>gb|AC083838.6| Homo sapiens chromosome 8, clone RP11-42L4, complete sequence Length = 156623 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 263 cttccagtgtttcttgctgttg 284 |||||||||||||||||||||| Sbjct: 95879 cttccagtgtttcttgctgttg 95858
>gb|AC120534.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0084A20, complete sequence Length = 139391 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 gtgatgacgtccctggtggcc 364 ||||||||||||||||||||| Sbjct: 66128 gtgatgacgtccctggtggcc 66108
>gb|AC138401.9| Mus musculus chromosome 13, clone RP24-79G5, complete sequence Length = 209942 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 tgagaggaatataaatagatg 556 ||||||||||||||||||||| Sbjct: 176572 tgagaggaatataaatagatg 176552
>gb|AC121936.2| Mus musculus BAC clone RP24-207J5 from 13, complete sequence Length = 157713 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 tgagaggaatataaatagatg 556 ||||||||||||||||||||| Sbjct: 45928 tgagaggaatataaatagatg 45908
>gb|AC093277.3| Homo sapiens chromosome 5 clone RP11-386E5, complete sequence Length = 58894 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 aggttacattctgttgtttgt 159 ||||||||||||||||||||| Sbjct: 20142 aggttacattctgttgtttgt 20162
>gb|AC114977.2| Homo sapiens chromosome 5 clone RP11-49C20, complete sequence Length = 180697 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 aggttacattctgttgtttgt 159 ||||||||||||||||||||| Sbjct: 7129 aggttacattctgttgtttgt 7109
>gb|AY224425.1| Oryza sativa (japonica cultivar-group) isolate 20135 bZIP-like protein mRNA, complete cds Length = 603 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 gtgatgacgtccctggtggcc 364 ||||||||||||||||||||| Sbjct: 519 gtgatgacgtccctggtggcc 499
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 gtgatgacgtccctggtggcc 364 ||||||||||||||||||||| Sbjct: 2925315 gtgatgacgtccctggtggcc 2925295
>gb|AC016950.8|AC016950 Homo sapiens 3 BAC RP11-239I11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159217 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 582 atgaaacaaattgtctcttgt 602 ||||||||||||||||||||| Sbjct: 40720 atgaaacaaattgtctcttgt 40740
>dbj|AK099600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047E21, full insert sequence Length = 3085 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 gtgatgacgtccctggtggcc 364 ||||||||||||||||||||| Sbjct: 2741 gtgatgacgtccctggtggcc 2721
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 gtgatgacgtccctggtggcc 364 ||||||||||||||||||||| Sbjct: 2934346 gtgatgacgtccctggtggcc 2934326
>gb|AC153889.19| Mus musculus 10 BAC RP23-434A12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190042 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ctcttccagtgtttcttgct 280 |||||||||||||||||||| Sbjct: 172152 ctcttccagtgtttcttgct 172133 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ctcttccagtgtttcttgct 280 |||||||||||||||||||| Sbjct: 39040 ctcttccagtgtttcttgct 39021
>ref|XM_550090.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gtgttccatcaccatgatgg 486 |||||||||||||||||||| Sbjct: 1512 gtgttccatcaccatgatgg 1493
>gb|AC167202.8| Mus musculus BAC RP24-243A15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 180658 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ctcttccagtgtttcttgct 280 |||||||||||||||||||| Sbjct: 29184 ctcttccagtgtttcttgct 29203
>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence Length = 211411 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gttgctaatatttcttggag 137 |||||||||||||||||||| Sbjct: 147525 gttgctaatatttcttggag 147544
>emb|AL158073.10| Human DNA sequence from clone RP11-323A7 on chromosome 9 Contains a cell division cycle associated 7 (JPO1, FLJ14722) (CDCA7) pseudogene, complete sequence Length = 186334 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aatcattgtacttctcttca 332 |||||||||||||||||||| Sbjct: 12980 aatcattgtacttctcttca 12961
>emb|AL663022.4|OSJN00222 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0054D14, complete sequence Length = 160587 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 caccctgtgcaactactctt 265 |||||||||||||||||||| Sbjct: 142570 caccctgtgcaactactctt 142589
>emb|AL731634.4|OSJN00276 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033P05, complete sequence Length = 120635 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 caccctgtgcaactactctt 265 |||||||||||||||||||| Sbjct: 19004 caccctgtgcaactactctt 19023
>gb|AC106038.3| Homo sapiens chromosome 8, clone RP11-68L18, complete sequence Length = 159024 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 ctaagttcactatgaaacaa 590 |||||||||||||||||||| Sbjct: 8882 ctaagttcactatgaaacaa 8863
>gb|AC093329.6| Homo sapiens chromosome 8, clone RP11-662G23, complete sequence Length = 191820 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 ctaagttcactatgaaacaa 590 |||||||||||||||||||| Sbjct: 66454 ctaagttcactatgaaacaa 66473
>gb|AC068510.8| Homo sapiens chromosome 8, clone RP11-662E23, complete sequence Length = 191820 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 ctaagttcactatgaaacaa 590 |||||||||||||||||||| Sbjct: 66454 ctaagttcactatgaaacaa 66473
>gb|AC174742.8| Mus musculus BAC RP24-258O12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163118 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ctcttccagtgtttcttgct 280 |||||||||||||||||||| Sbjct: 56463 ctcttccagtgtttcttgct 56444
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 caccctgtgcaactactctt 265 |||||||||||||||||||| Sbjct: 15126109 caccctgtgcaactactctt 15126128
>gb|AC098823.3| Homo sapiens BAC clone RP11-420E18 from 2, complete sequence Length = 102117 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 atgaagttccctaagttcac 580 |||||||||||||||||||| Sbjct: 96183 atgaagttccctaagttcac 96202
>gb|AF343884.1| Phalanger sericeus NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1040 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ctgttgtttgtgttaggaaa 168 |||||||||||||||||||| Sbjct: 196 ctgttgtttgtgttaggaaa 177
>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0019D06 Length = 167405 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gtgttccatcaccatgatgg 486 |||||||||||||||||||| Sbjct: 32899 gtgttccatcaccatgatgg 32880
>dbj|AK066922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090N09, full insert sequence Length = 1632 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gtgttccatcaccatgatgg 486 |||||||||||||||||||| Sbjct: 1512 gtgttccatcaccatgatgg 1493
>gb|AC172027.4| Mus musculus BAC RP24-219P17 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185679 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ctcttccagtgtttcttgct 280 |||||||||||||||||||| Sbjct: 106592 ctcttccagtgtttcttgct 106573
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 cttgtacttgtaccagcattatca 247 |||||||||||||||||| ||||| Sbjct: 1044267 cttgtacttgtaccagcagtatca 1044290
>gb|AC171183.6| Mus musculus BAC RP24-545B2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 211697 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ctcttccagtgtttcttgct 280 |||||||||||||||||||| Sbjct: 125104 ctcttccagtgtttcttgct 125085
>emb|AL627259.8| Mouse DNA sequence from clone RP23-399H3 on chromosome 4, complete sequence Length = 176063 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 aatgaagttccctaagttca 579 |||||||||||||||||||| Sbjct: 143947 aatgaagttccctaagttca 143966 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,956,222 Number of Sequences: 3902068 Number of extensions: 5956222 Number of successful extensions: 108730 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108433 Number of HSP's gapped (non-prelim): 283 length of query: 672 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 649 effective length of database: 17,143,297,704 effective search space: 11126000209896 effective search space used: 11126000209896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)