Clone Name | bags9h15 |
---|---|
Clone Library Name | barley_pub |
>gb|BT008915.1| Triticum aestivum clone wpa1c.pk004.i4:fis, full insert mRNA sequence Length = 2453 Score = 1116 bits (563), Expect = 0.0 Identities = 616/631 (97%), Gaps = 2/631 (0%) Strand = Plus / Plus Query: 1 tgggacgttgcatgataactttgtgaatgcagttgagactttcagnagnattgtagatac 60 |||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||| Sbjct: 345 tgggacgttgcacgataactttgtgaatgcagttgagactttcag-ag-actgtagatac 402 Query: 61 ctaggtacaagggtccatgcagatggaacaattggagactacaaatggatgacttatgga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 ctaggtacaagggtccatgcagatggaacaattggagactacaaatggatgacttatgga 462 Query: 121 gaagctggcacaagcaggactgcaataggttctggccttatttgtcatggaatacctaaa 180 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 463 gaagctggcacaagcaggactgcaataggttctggtcttatttgtcatggaatacctaaa 522 Query: 181 ggcgcacgtgttggtctgtattttataaatagacctgagtggaccatagttgacaatgct 240 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 523 ggcgcacgtgttggtctgtattttataaacagacctgagtggaccatagttgacaatgct 582 Query: 241 tgttctgcgtattcatatgtttctgtgccactatatgatactcttggtccagatgcagtt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 583 tgttctgcgtattcatatgtttctgtgccactatatgatactcttggtccagatgcagtt 642 Query: 301 cagttcattgtgaatcatgcatcagtagaggctatcttctgtgttccacaaacactaagc 360 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 643 cagttcattgtgaaccatgcatcagtagaggctatcttctgtgttcctgaaacactaagc 702 Query: 361 actctattaagctttataactcaaatgccttgtgtgcgccttatcgtggtagttggtgga 420 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 703 actttgttaagctttataactcaaatgccttgtgtgcgccttatcgtggtagttggtgga 762 Query: 421 atcgatgagaatatgccatcttcacctgcagctgctggaatggaaattataacctattcc 480 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 763 atcgaggagaatatgccatcttcacctgcagctgctggaatggaaatcataacctactcc 822 Query: 481 atgctacacagacagggacatatgagtcctcaaccctttcggcctccaaaacctgaagat 540 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 823 atgctacacagacagggacatatgagtccccaaccctttcggcctccaaaacctgaagat 882 Query: 541 gttgccactatctgctacactagtggcactactggcacaccaaagggagctgttctttct 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 883 gttgccactatctgctacactagtggcactactggcacaccaaagggagctgttctttct 942 Query: 601 catgcgaatttcattgcaaatgtagcaggcc 631 ||||||||||||||||||||||||||||||| Sbjct: 943 catgcgaatttcattgcaaatgtagcaggcc 973
>dbj|AK065216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G08, full insert sequence Length = 2525 Score = 525 bits (265), Expect = e-146 Identities = 531/619 (85%), Gaps = 2/619 (0%) Strand = Plus / Plus Query: 11 catgataactttgtgaatgcagttgagactttcagnagnattgtagatacctaggtacaa 70 ||||||||||||||| |||||||||| || || || | | ||||||||||| || |||| Sbjct: 410 catgataactttgtgtatgcagttgaaacctttag--ggactgtagatacctgggcacaa 467 Query: 71 gggtccatgcagatggaacaattggagactacaaatggatgacttatggagaagctggca 130 | ||| || ||||||||| |||| ||||||||||||||||| |||||||||||| | | Sbjct: 468 gagtctgtgttgatggaacagttggggactacaaatggatgacatatggagaagctagta 527 Query: 131 caagcaggactgcaataggttctggccttatttgtcatggaatacctaaaggcgcacgtg 190 ||||| ||||||| ||||||||||| ||||||| |||||||||||| |||| || || Sbjct: 528 caagccggactgcgataggttctggtcttatttaccatggaatacctgaaggtgcgcgca 587 Query: 191 ttggtctgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgcgt 250 ||||| ||||||||||||| ||||||||||||||||||||||| |||| ||| | || | Sbjct: 588 ttggtttgtattttataaacagacctgagtggaccatagttgatcatgcctgtgcggcat 647 Query: 251 attcatatgtttctgtgccactatatgatactcttggtccagatgcagttcagttcattg 310 |||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 648 attcatatgtatccgtgccactttatgatactctaggtccagatgcagttcagttcattg 707 Query: 311 tgaatcatgcatcagtagaggctatcttctgtgttccacaaacactaagcactctattaa 370 | || ||||| ||||| | ||||| |||||||| || |||||||||||||||||| ||| Sbjct: 708 ttaaccatgcgacagtacaagctattttctgtgtgcctcaaacactaagcactctactaa 767 Query: 371 gctttataactcaaatgccttgtgtgcgccttatcgtggtagttggtggaatcgatgaga 430 ||||||||||||||||||| ||||| |||||||| |||||| |||||||| | ||| | Sbjct: 768 gctttataactcaaatgccgtgtgttcgccttatagtggtaattggtggagacaatgcaa 827 Query: 431 atatgccatcttcacctgcagctgctggaatggaaattataacctattccatgctacaca 490 ||||||||||| | || ||||| ||||| ||||||||||||| || |||| |||| | Sbjct: 828 atatgccatctaccccaacagctactggagtggaaattataacttactccagactactta 887 Query: 491 gacagggacatatgagtcctcaaccctttcggcctccaaaacctgaagatgttgccacta 550 | |||||| |||||| ||||| | ||||| |||||||||||||||||| ||||||||| Sbjct: 888 gccagggaaggatgagttctcaatcttttcgccctccaaaacctgaagatattgccacta 947 Query: 551 tctgctacactagtggcactactggcacaccaaagggagctgttctttctcatgcgaatt 610 | || |||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| Sbjct: 948 tttgttacactagtggcactactggcacaccgaagggagttgttctttctcatgggaatt 1007 Query: 611 tcattgcaaatgtagcagg 629 | ||||||||||||||||| Sbjct: 1008 taattgcaaatgtagcagg 1026
>dbj|AK067232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095N19, full insert sequence Length = 2600 Score = 462 bits (233), Expect = e-127 Identities = 523/619 (84%), Gaps = 2/619 (0%) Strand = Plus / Plus Query: 11 catgataactttgtgaatgcagttgagactttcagnagnattgtagatacctaggtacaa 70 |||||||| || ||| ||||||||||||| || || | | ||||||||||| || |||| Sbjct: 391 catgataatttcgtgtatgcagttgagacctttag--ggactgtagatacctgggcacaa 448 Query: 71 gggtccatgcagatggaacaattggagactacaaatggatgacttatggagaagctggca 130 | || || ||||||||| |||| ||||||||||||||||| |||||||||||| | | Sbjct: 449 gaatctgcgctgatggaacagttggggactacaaatggatgacatatggagaagctagta 508 Query: 131 caagcaggactgcaataggttctggccttatttgtcatggaatacctaaaggcgcacgtg 190 ||| ||||||||||||||||||||| ||||||| ||||||||||||| |||| ||| | Sbjct: 509 caaacaggactgcaataggttctggtcttatttatcatggaatacctgaaggtgcatgca 568 Query: 191 ttggtctgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgcgt 250 ||||| ||||||||||||| ||||||||||||| ||||||||| |||| ||| | || | Sbjct: 569 ttggtttgtattttataaacagacctgagtggatcatagttgatcatgcctgtgcagcat 628 Query: 251 attcatatgtttctgtgccactatatgatactcttggtccagatgcagttcagttcattg 310 |||||| || ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct: 629 attcattcgtgtctgtgccactttatgacactattggtccagatgcagttcagttcattg 688 Query: 311 tgaatcatgcatcagtagaggctatcttctgtgttccacaaacactaagcactctattaa 370 | || ||||| ||||||| ||||| |||||||| || ||||||||||||||||| |||| Sbjct: 689 tcaaccatgcgacagtagaagctattttctgtgtgcctcaaacactaagcactctgttaa 748 Query: 371 gctttataactcaaatgccttgtgtgcgccttatcgtggtagttggtggaatcgatgaga 430 ||||||||||||||||||| ||||| |||||||| |||||| |||||||| | ||| | Sbjct: 749 gctttataactcaaatgccatgtgttcgccttatagtggtaattggtggagacaatgcaa 808 Query: 431 atatgccatcttcacctgcagctgctggaatggaaattataacctattccatgctacaca 490 ||||||||||| | || || || ||||| |||||||||||| || |||| |||| || Sbjct: 809 atatgccatctaccccaacatctactggagtggaaattataatttactccagactactca 868 Query: 491 gacagggacatatgagtcctcaaccctttcggcctccaaaacctgaagatgttgccacta 550 ||||| | |||||| || ||| ||||| |||||||||||||||||||||||||||| Sbjct: 869 accaggggaagatgagttctagaccttttcgtcctccaaaacctgaagatgttgccacta 928 Query: 551 tctgctacactagtggcactactggcacaccaaagggagctgttctttctcatgcgaatt 610 | || |||||||||||||| || |||||||||||||||| ||||||||||||| ||| | Sbjct: 929 tttgttacactagtggcacaaccggcacaccaaagggagttgttctttctcataggaact 988 Query: 611 tcattgcaaatgtagcagg 629 | || |||||||||||||| Sbjct: 989 taatcgcaaatgtagcagg 1007
>gb|AY109410.1| Zea mays CL741_1 mRNA sequence Length = 2505 Score = 260 bits (131), Expect = 5e-66 Identities = 325/387 (83%), Gaps = 2/387 (0%) Strand = Plus / Plus Query: 9 tgcatgataactttgtgaatgcagttgagactttcagnagnattgtagatacctaggtac 68 |||||||||| ||||| |||||||||| |||||| | || |||||||||| | ||||| Sbjct: 366 tgcatgataattttgtatatgcagttgaaactttccg-ag-attgtagatatttgggtac 423 Query: 69 aagggtccatgcagatggaacaattggagactacaaatggatgacttatggagaagctgg 128 ||| ||| |||| || ||| ||||||||||||| |||||||| |||||||||||| | Sbjct: 424 aagaatccgcccagacgggacagttggagactacaagtggatgacgtatggagaagctag 483 Query: 129 cacaagcaggactgcaataggttctggccttatttgtcatggaatacctaaaggcgcacg 188 ||| ||||| ||||||||||||||||| ||||||| |||||||||| || |||| ||||| Sbjct: 484 cacgagcagaactgcaataggttctggtcttatttatcatggaatatctgaaggtgcacg 543 Query: 189 tgttggtctgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgc 248 ||||||| ||||||||||| ||||| ||||||| |||| ||||| |||||||| | || Sbjct: 544 aattggtctatattttataaacagaccggagtggatcatacttgaccatgcttgtgcggc 603 Query: 249 gtattcatatgtttctgtgccactatatgatactcttggtccagatgcagttcagttcat 308 || |||||||| |||||||| || ||||||||||| || ||||||||||||||||| || Sbjct: 604 atactcatatgtatctgtgccgctttatgatactctcggcccagatgcagttcagtttat 663 Query: 309 tgtgaatcatgcatcagtagaggctatcttctgtgttccacaaacactaagcactctatt 368 ||||| || ||| | ||||| | ||| |||||||| || ||||| |||||| || | || Sbjct: 664 agtgaaccacgcaacggtagaagttatattctgtgtgccccaaactctaagcgctatttt 723 Query: 369 aagctttataactcaaatgccttgtgt 395 ||||||||| ||||||||||| ||||| Sbjct: 724 aagctttattactcaaatgccgtgtgt 750 Score = 167 bits (84), Expect = 6e-38 Identities = 117/128 (91%) Strand = Plus / Plus Query: 502 atgagtcctcaaccctttcggcctccaaaacctgaagatgttgccactatctgctacact 561 |||||||||||| | ||||| || ||||||||||||||| | ||||||||||||||||| Sbjct: 857 atgagtcctcaaacttttcgtccaccaaaacctgaagatatagccactatctgctacacc 916 Query: 562 agtggcactactggcacaccaaagggagctgttctttctcatgcgaatttcattgcaaat 621 |||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||| Sbjct: 917 agtggcactactggcacaccaaagggagctgtactttctcatgagaacttaattgcaaat 976 Query: 622 gtagcagg 629 |||||||| Sbjct: 977 gtagcagg 984
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 109 bits (55), Expect = 1e-20 Identities = 73/79 (92%) Strand = Plus / Minus Query: 99 ctacaaatggatgacttatggagaagctggcacaagcaggactgcaataggttctggcct 158 ||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||| || Sbjct: 2122339 ctacaaatggatgacatatggagaagctagtacaaacaggactgcaataggttctggtct 2122280 Query: 159 tatttgtcatggaatacct 177 ||||| ||||||||||||| Sbjct: 2122279 tatttatcatggaatacct 2122261 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 517 tttcggcctccaaaacctgaagatgttgccactatctgctacactagtggcactactggc 576 ||||| ||||||||||||||||||||||||||||| || |||||||||||||| || ||| Sbjct: 2120431 tttcgtcctccaaaacctgaagatgttgccactatttgttacactagtggcacaaccggc 2120372 Query: 577 acaccaaagg 586 |||||||||| Sbjct: 2120371 acaccaaagg 2120362 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 286 ggtccagatgcagttcagttcattgtgaatcatgcatcagtagaggctatcttctgtgtt 345 |||||||||||||||||||||||||| || ||||| ||||||| ||||| |||||||| Sbjct: 2121924 ggtccagatgcagttcagttcattgtcaaccatgcgacagtagaagctattttctgtgtg 2121865 Query: 346 ccacaaacactaagcact 363 || ||||||||||||||| Sbjct: 2121864 cctcaaacactaagcact 2121847 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 191 ttggtctgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgcgt 250 ||||| ||||||||||||| ||||||||||||| ||||||||| |||| ||| | || | Sbjct: 2122092 ttggtttgtattttataaacagacctgagtggatcatagttgatcatgcctgtgcagcat 2122033 Query: 251 attcatatgtttctgtgccactatatgatactcttggt 288 |||||| || ||||||||||| ||||| ||||||||| Sbjct: 2122032 attcattcgtgtctgtgccactttatgacactcttggt 2121995 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 367 ttaagctttataactcaaatgccttgtgtgcgccttatcgtggta 411 ||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 2121422 ttaagctttataactcaaatgccatgtgttcgccttatagtggta 2121378 Score = 44.1 bits (22), Expect = 0.55 Identities = 40/46 (86%) Strand = Plus / Minus Query: 584 agggagctgttctttctcatgcgaatttcattgcaaatgtagcagg 629 |||||| ||||||||||||| ||| || || |||||||||||||| Sbjct: 2120268 agggagttgttctttctcataggaacttaatcgcaaatgtagcagg 2120223
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 109 bits (55), Expect = 1e-20 Identities = 73/79 (92%) Strand = Plus / Minus Query: 99 ctacaaatggatgacttatggagaagctggcacaagcaggactgcaataggttctggcct 158 ||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||| || Sbjct: 2130120 ctacaaatggatgacatatggagaagctagtacaaacaggactgcaataggttctggtct 2130061 Query: 159 tatttgtcatggaatacct 177 ||||| ||||||||||||| Sbjct: 2130060 tatttatcatggaatacct 2130042 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 517 tttcggcctccaaaacctgaagatgttgccactatctgctacactagtggcactactggc 576 ||||| ||||||||||||||||||||||||||||| || |||||||||||||| || ||| Sbjct: 2128212 tttcgtcctccaaaacctgaagatgttgccactatttgttacactagtggcacaaccggc 2128153 Query: 577 acaccaaagg 586 |||||||||| Sbjct: 2128152 acaccaaagg 2128143 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 286 ggtccagatgcagttcagttcattgtgaatcatgcatcagtagaggctatcttctgtgtt 345 |||||||||||||||||||||||||| || ||||| ||||||| ||||| |||||||| Sbjct: 2129705 ggtccagatgcagttcagttcattgtcaaccatgcgacagtagaagctattttctgtgtg 2129646 Query: 346 ccacaaacactaagcact 363 || ||||||||||||||| Sbjct: 2129645 cctcaaacactaagcact 2129628 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 191 ttggtctgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgcgt 250 ||||| ||||||||||||| ||||||||||||| ||||||||| |||| ||| | || | Sbjct: 2129873 ttggtttgtattttataaacagacctgagtggatcatagttgatcatgcctgtgcagcat 2129814 Query: 251 attcatatgtttctgtgccactatatgatactcttggt 288 |||||| || ||||||||||| ||||| ||||||||| Sbjct: 2129813 attcattcgtgtctgtgccactttatgacactcttggt 2129776 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 367 ttaagctttataactcaaatgccttgtgtgcgccttatcgtggta 411 ||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 2129203 ttaagctttataactcaaatgccatgtgttcgccttatagtggta 2129159 Score = 44.1 bits (22), Expect = 0.55 Identities = 40/46 (86%) Strand = Plus / Minus Query: 584 agggagctgttctttctcatgcgaatttcattgcaaatgtagcagg 629 |||||| ||||||||||||| ||| || || |||||||||||||| Sbjct: 2128049 agggagttgttctttctcataggaacttaatcgcaaatgtagcagg 2128004
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125593 Score = 109 bits (55), Expect = 1e-20 Identities = 73/79 (92%) Strand = Plus / Minus Query: 99 ctacaaatggatgacttatggagaagctggcacaagcaggactgcaataggttctggcct 158 ||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||| || Sbjct: 19033 ctacaaatggatgacatatggagaagctagtacaaacaggactgcaataggttctggtct 18974 Query: 159 tatttgtcatggaatacct 177 ||||| ||||||||||||| Sbjct: 18973 tatttatcatggaatacct 18955 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 517 tttcggcctccaaaacctgaagatgttgccactatctgctacactagtggcactactggc 576 ||||| ||||||||||||||||||||||||||||| || |||||||||||||| || ||| Sbjct: 17125 tttcgtcctccaaaacctgaagatgttgccactatttgttacactagtggcacaaccggc 17066 Query: 577 acaccaaagg 586 |||||||||| Sbjct: 17065 acaccaaagg 17056 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 286 ggtccagatgcagttcagttcattgtgaatcatgcatcagtagaggctatcttctgtgtt 345 |||||||||||||||||||||||||| || ||||| ||||||| ||||| |||||||| Sbjct: 18618 ggtccagatgcagttcagttcattgtcaaccatgcgacagtagaagctattttctgtgtg 18559 Query: 346 ccacaaacactaagcact 363 || ||||||||||||||| Sbjct: 18558 cctcaaacactaagcact 18541 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 191 ttggtctgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgcgt 250 ||||| ||||||||||||| ||||||||||||| ||||||||| |||| ||| | || | Sbjct: 18786 ttggtttgtattttataaacagacctgagtggatcatagttgatcatgcctgtgcagcat 18727 Query: 251 attcatatgtttctgtgccactatatgatactcttggt 288 |||||| || ||||||||||| ||||| ||||||||| Sbjct: 18726 attcattcgtgtctgtgccactttatgacactcttggt 18689 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 367 ttaagctttataactcaaatgccttgtgtgcgccttatcgtggta 411 ||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 18116 ttaagctttataactcaaatgccatgtgttcgccttatagtggta 18072 Score = 44.1 bits (22), Expect = 0.55 Identities = 40/46 (86%) Strand = Plus / Minus Query: 584 agggagctgttctttctcatgcgaatttcattgcaaatgtagcagg 629 |||||| ||||||||||||| ||| || || |||||||||||||| Sbjct: 16962 agggagttgttctttctcataggaacttaatcgcaaatgtagcagg 16917
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 493 cagggacatatgagtcctcaaccctttcggcctccaaaacctgaagatgttgccactatc 552 |||||| | |||||| ||||| | ||||| |||||||||||||||||| |||||||||| Sbjct: 2165044 cagggaaagatgagttctcaatcttttcgccctccaaaacctgaagatattgccactatt 2164985 Query: 553 tgctacactagtggcactactggcacaccaaagg 586 || |||||||||||||||||||||||||| |||| Sbjct: 2164984 tgttacactagtggcactactggcacaccgaagg 2164951 Score = 99.6 bits (50), Expect = 1e-17 Identities = 83/94 (88%) Strand = Plus / Minus Query: 191 ttggtctgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgcgt 250 ||||| ||||||||||||| ||||||||||||||||||||||| |||| ||| | || | Sbjct: 2167215 ttggtttgtattttataaacagacctgagtggaccatagttgatcatgcctgtgcggcat 2167156 Query: 251 attcatatgtttctgtgccactatatgatactct 284 |||||||||| || |||||||| ||||||||||| Sbjct: 2167155 attcatatgtatccgtgccactttatgatactct 2167122 Score = 93.7 bits (47), Expect = 7e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 99 ctacaaatggatgacttatggagaagctggcacaagcaggactgcaataggttctggcct 158 ||||||||||||||| |||||||||||| | |||||| ||||||| ||||||||||| || Sbjct: 2167464 ctacaaatggatgacatatggagaagctagtacaagccggactgcgataggttctggtct 2167405 Query: 159 tatttgtcatggaatacct 177 ||||| |||||||||||| Sbjct: 2167404 tatttaccatggaatacct 2167386 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 286 ggtccagatgcagttcagttcattgtgaatcatgcatcagtagaggctatcttctgtgtt 345 |||||||||||||||||||||||||| || ||||| ||||| | ||||| |||||||| Sbjct: 2167043 ggtccagatgcagttcagttcattgttaaccatgcgacagtacaagctattttctgtgtg 2166984 Query: 346 ccacaaacactaagcact 363 || ||||||||||||||| Sbjct: 2166983 cctcaaacactaagcact 2166966 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 584 agggagctgttctttctcatgcgaatttcattgcaaatgtagcagg 629 |||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct: 2164859 agggagttgttctttctcatgggaatttaattgcaaatgtagcagg 2164814 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 368 taagctttataactcaaatgccttgtgtgcgccttatcgtggta 411 |||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 2166535 taagctttataactcaaatgccgtgtgttcgccttatagtggta 2166492 Score = 40.1 bits (20), Expect = 8.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 430 aatatgccatcttcacctgcagctgctggaatggaaattataac 473 |||||||||||| | || ||||| ||||| ||||||||||||| Sbjct: 2166372 aatatgccatctaccccaacagctactggagtggaaattataac 2166329
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 493 cagggacatatgagtcctcaaccctttcggcctccaaaacctgaagatgttgccactatc 552 |||||| | |||||| ||||| | ||||| |||||||||||||||||| |||||||||| Sbjct: 2164988 cagggaaagatgagttctcaatcttttcgccctccaaaacctgaagatattgccactatt 2164929 Query: 553 tgctacactagtggcactactggcacaccaaagg 586 || |||||||||||||||||||||||||| |||| Sbjct: 2164928 tgttacactagtggcactactggcacaccgaagg 2164895 Score = 99.6 bits (50), Expect = 1e-17 Identities = 83/94 (88%) Strand = Plus / Minus Query: 191 ttggtctgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgcgt 250 ||||| ||||||||||||| ||||||||||||||||||||||| |||| ||| | || | Sbjct: 2167159 ttggtttgtattttataaacagacctgagtggaccatagttgatcatgcctgtgcggcat 2167100 Query: 251 attcatatgtttctgtgccactatatgatactct 284 |||||||||| || |||||||| ||||||||||| Sbjct: 2167099 attcatatgtatccgtgccactttatgatactct 2167066 Score = 93.7 bits (47), Expect = 7e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 99 ctacaaatggatgacttatggagaagctggcacaagcaggactgcaataggttctggcct 158 ||||||||||||||| |||||||||||| | |||||| ||||||| ||||||||||| || Sbjct: 2167408 ctacaaatggatgacatatggagaagctagtacaagccggactgcgataggttctggtct 2167349 Query: 159 tatttgtcatggaatacct 177 ||||| |||||||||||| Sbjct: 2167348 tatttaccatggaatacct 2167330 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 286 ggtccagatgcagttcagttcattgtgaatcatgcatcagtagaggctatcttctgtgtt 345 |||||||||||||||||||||||||| || ||||| ||||| | ||||| |||||||| Sbjct: 2166987 ggtccagatgcagttcagttcattgttaaccatgcgacagtacaagctattttctgtgtg 2166928 Query: 346 ccacaaacactaagcact 363 || ||||||||||||||| Sbjct: 2166927 cctcaaacactaagcact 2166910 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 584 agggagctgttctttctcatgcgaatttcattgcaaatgtagcagg 629 |||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct: 2164803 agggagttgttctttctcatgggaatttaattgcaaatgtagcagg 2164758 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 368 taagctttataactcaaatgccttgtgtgcgccttatcgtggta 411 |||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 2166479 taagctttataactcaaatgccgtgtgttcgccttatagtggta 2166436 Score = 40.1 bits (20), Expect = 8.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 430 aatatgccatcttcacctgcagctgctggaatggaaattataac 473 |||||||||||| | || ||||| ||||| ||||||||||||| Sbjct: 2166316 aatatgccatctaccccaacagctactggagtggaaattataac 2166273
>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132703 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 493 cagggacatatgagtcctcaaccctttcggcctccaaaacctgaagatgttgccactatc 552 |||||| | |||||| ||||| | ||||| |||||||||||||||||| |||||||||| Sbjct: 47268 cagggaaagatgagttctcaatcttttcgccctccaaaacctgaagatattgccactatt 47209 Query: 553 tgctacactagtggcactactggcacaccaaagg 586 || |||||||||||||||||||||||||| |||| Sbjct: 47208 tgttacactagtggcactactggcacaccgaagg 47175 Score = 99.6 bits (50), Expect = 1e-17 Identities = 83/94 (88%) Strand = Plus / Minus Query: 191 ttggtctgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgcgt 250 ||||| ||||||||||||| ||||||||||||||||||||||| |||| ||| | || | Sbjct: 49439 ttggtttgtattttataaacagacctgagtggaccatagttgatcatgcctgtgcggcat 49380 Query: 251 attcatatgtttctgtgccactatatgatactct 284 |||||||||| || |||||||| ||||||||||| Sbjct: 49379 attcatatgtatccgtgccactttatgatactct 49346 Score = 93.7 bits (47), Expect = 7e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 99 ctacaaatggatgacttatggagaagctggcacaagcaggactgcaataggttctggcct 158 ||||||||||||||| |||||||||||| | |||||| ||||||| ||||||||||| || Sbjct: 49688 ctacaaatggatgacatatggagaagctagtacaagccggactgcgataggttctggtct 49629 Query: 159 tatttgtcatggaatacct 177 ||||| |||||||||||| Sbjct: 49628 tatttaccatggaatacct 49610 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 286 ggtccagatgcagttcagttcattgtgaatcatgcatcagtagaggctatcttctgtgtt 345 |||||||||||||||||||||||||| || ||||| ||||| | ||||| |||||||| Sbjct: 49267 ggtccagatgcagttcagttcattgttaaccatgcgacagtacaagctattttctgtgtg 49208 Query: 346 ccacaaacactaagcact 363 || ||||||||||||||| Sbjct: 49207 cctcaaacactaagcact 49190 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 584 agggagctgttctttctcatgcgaatttcattgcaaatgtagcagg 629 |||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct: 47083 agggagttgttctttctcatgggaatttaattgcaaatgtagcagg 47038 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 368 taagctttataactcaaatgccttgtgtgcgccttatcgtggta 411 |||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 48759 taagctttataactcaaatgccgtgtgttcgccttatagtggta 48716 Score = 40.1 bits (20), Expect = 8.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 430 aatatgccatcttcacctgcagctgctggaatggaaattataac 473 |||||||||||| | || ||||| ||||| ||||||||||||| Sbjct: 48596 aatatgccatctaccccaacagctactggagtggaaattataac 48553
>ref|NM_111471.2| Arabidopsis thaliana LACS6 (LONG-CHAIN ACYL-COA SYNTHETASE 6); catalytic AT3G05970 (LACS6) mRNA, complete cds Length = 2354 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 92 ttggagactacaaatggatgacttatggagaagctgg 128 |||||||||||||||||||||| |||||||||||||| Sbjct: 394 ttggagactacaaatggatgacatatggagaagctgg 430 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 236 atgcttgttctgcgtattcatatgtttctgtgccactatatgatactcttggtccagatg 295 ||||||||||| | ||||| ||||| ||||| || | ||||||||||||||||| |||| Sbjct: 538 atgcttgttcttcttattcttatgtgtctgttcctttgtatgatactcttggtcctgatg 597 Query: 296 cagttcagttcattgtgaatcatgca 321 | || | || ||||| ||||||||| Sbjct: 598 ctgtgaaatttattgtcaatcatgca 623
>gb|AF503756.1| Arabidopsis thaliana long chain acyl-CoA synthetase 6 (LACS6) mRNA, complete cds Length = 2106 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 92 ttggagactacaaatggatgacttatggagaagctgg 128 |||||||||||||||||||||| |||||||||||||| Sbjct: 338 ttggagactacaaatggatgacatatggagaagctgg 374 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 236 atgcttgttctgcgtattcatatgtttctgtgccactatatgatactcttggtccagatg 295 ||||||||||| | ||||| ||||| ||||| || | ||||||||||||||||| |||| Sbjct: 482 atgcttgttcttcttattcttatgtgtctgttcctttgtatgatactcttggtcctgatg 541 Query: 296 cagttcagttcattgtgaatcatgca 321 | || | || ||||| ||||||||| Sbjct: 542 ctgtgaaatttattgtcaatcatgca 567
>gb|AY094418.1| Arabidopsis thaliana AT3g05970/F2O10_9 mRNA, complete cds Length = 2290 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 92 ttggagactacaaatggatgacttatggagaagctgg 128 |||||||||||||||||||||| |||||||||||||| Sbjct: 393 ttggagactacaaatggatgacatatggagaagctgg 429 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 236 atgcttgttctgcgtattcatatgtttctgtgccactatatgatactcttggtccagatg 295 ||||||||||| | ||||| ||||| ||||| || | ||||||||||||||||| |||| Sbjct: 537 atgcttgttcttcttattcttatgtgtctgttcctttgtatgatactcttggtcctgatg 596 Query: 296 cagttcagttcattgtgaatcatgca 321 | || | || ||||| ||||||||| Sbjct: 597 ctgtgaaatttattgtcaatcatgca 622
>dbj|AB030317.2| Arabidopsis thaliana AtLACS6 mRNA for long-chain acyl-CoA synthetase, complete cds Length = 2284 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 92 ttggagactacaaatggatgacttatggagaagctgg 128 |||||||||||||||||||||| |||||||||||||| Sbjct: 370 ttggagactacaaatggatgacatatggagaagctgg 406 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 236 atgcttgttctgcgtattcatatgtttctgtgccactatatgatactcttggtccagatg 295 ||||||||||| | ||||| ||||| ||||| || | ||||||||||||||||| |||| Sbjct: 514 atgcttgttcttcttattcttatgtgtctgttcctttgtatgatactcttggtcctgatg 573 Query: 296 cagttcagttcattgtgaatcatgca 321 | || | || ||||| ||||||||| Sbjct: 574 ctgtgaaatttattgtcaatcatgca 599
>gb|BT001117.1| Arabidopsis thaliana At3g05970/F2O10_9 mRNA, complete cds Length = 2106 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 92 ttggagactacaaatggatgacttatggagaagctgg 128 |||||||||||||||||||||| |||||||||||||| Sbjct: 338 ttggagactacaaatggatgacatatggagaagctgg 374 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 236 atgcttgttctgcgtattcatatgtttctgtgccactatatgatactcttggtccagatg 295 ||||||||||| | ||||| ||||| ||||| || | ||||||||||||||||| |||| Sbjct: 482 atgcttgttcttcttattcttatgtgtctgttcctttgtatgatactcttggtcctgatg 541 Query: 296 cagttcagttcattgtgaatcatgca 321 | || | || ||||| ||||||||| Sbjct: 542 ctgtgaaatttattgtcaatcatgca 567
>emb|Z72152.1|BNAMPBP2 B.napus mRNA for AMP-binding protein (2287 bp) Length = 2287 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 92 ttggagactacaaatggatgacttatggagaag 124 |||||||||||||||||||||| |||||||||| Sbjct: 350 ttggagactacaaatggatgacatatggagaag 382 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 274 tatgatactcttggtccagatgcagttcagttcattgtgaatcatgca 321 ||||||||||||||||| ||||| || |||| || || ||||||||| Sbjct: 532 tatgatactcttggtcctgatgctgtaaagtttatcgtcaatcatgca 579
>gb|AC013454.6|ATAC013454 Arabidopsis thaliana chromosome III BAC F2O10 genomic sequence, complete sequence Length = 62271 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 99 ctacaaatggatgacttatggagaagctgg 128 ||||||||||||||| |||||||||||||| Sbjct: 28402 ctacaaatggatgacatatggagaagctgg 28431 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 236 atgcttgttctgcgtattcatatgtttctgtgccactatatgatactcttggt 288 ||||||||||| | ||||| ||||| ||||| || | ||||||||||||||| Sbjct: 28622 atgcttgttcttcttattcttatgtgtctgttcctttgtatgatactcttggt 28674
>ref|NM_122642.3| Arabidopsis thaliana LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7); catalytic AT5G27600 (LACS7) mRNA, complete cds Length = 2313 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Plus Query: 236 atgcttgttctgcgtattcatatgtttctgtgccactatatgatactcttggtccagatg 295 |||||||| | || ||||||| ||| ||||| || |||||||||| ||||||||||| | Sbjct: 482 atgcttgtgcagcatattcatttgtctctgttcctttatatgatacacttggtccagacg 541 Query: 296 cagttcagttcattgtgaatcatgc 320 | ||| |||| | ||||||||||| Sbjct: 542 ctgttaagtttgtggtgaatcatgc 566 Score = 40.1 bits (20), Expect = 8.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 82 gatggaacaattggagactacaaatggatgacttatggagaagc 125 |||||||| |||||||| || ||||||||| ||||||||||| Sbjct: 328 gatggaaccattggagagtattcatggatgacatatggagaagc 371
>gb|AF503757.1| Arabidopsis thaliana long chain acyl-CoA synthetase 7 (LACS7) mRNA, complete cds Length = 2103 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Plus Query: 236 atgcttgttctgcgtattcatatgtttctgtgccactatatgatactcttggtccagatg 295 |||||||| | || ||||||| ||| ||||| || |||||||||| ||||||||||| | Sbjct: 482 atgcttgtgcagcatattcatttgtctctgttcctttatatgatacacttggtccagacg 541 Query: 296 cagttcagttcattgtgaatcatgc 320 | ||| |||| | ||||||||||| Sbjct: 542 ctgttaagtttgtggtgaatcatgc 566 Score = 40.1 bits (20), Expect = 8.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 82 gatggaacaattggagactacaaatggatgacttatggagaagc 125 |||||||| |||||||| || ||||||||| ||||||||||| Sbjct: 328 gatggaaccattggagagtattcatggatgacatatggagaagc 371
>gb|AC137838.40| Medicago truncatula clone mth2-34l12, complete sequence Length = 121469 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Plus Query: 197 tgtattttataaatagacctgagtggaccatagttgacaatgcttgttctgcgtattcat 256 |||||||||| || |||||||||||| ||| ||||| ||||||| ||||| ||||||| Sbjct: 44207 tgtattttattaacagacctgagtggctcattgttgatcatgcttgctctgcatattcat 44266 Query: 257 a 257 | Sbjct: 44267 a 44267
>dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-812L3, complete sequences Length = 169152 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 211 agacctgagtggaccatagttg 232 |||||||||||||||||||||| Sbjct: 20488 agacctgagtggaccatagttg 20509
>gb|BT014418.1| Lycopersicon esculentum clone 133726R, mRNA sequence Length = 1452 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 tggtagttggtggaatcgatg 427 ||||||||||||||||||||| Sbjct: 1065 tggtagttggtggaatcgatg 1085
>emb|BX294168.12| Mouse DNA sequence from clone RP23-29M4 on chromosome X, complete sequence Length = 225924 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 ttatcgtggtagttggtggaa 421 ||||||||||||||||||||| Sbjct: 187229 ttatcgtggtagttggtggaa 187249
>gb|AC002315.1|AC002315 Mouse BAC-146N21 Chromosome X contains iduronate-2-sulfatase gene; complete sequence Length = 110079 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 ttatcgtggtagttggtggaa 421 ||||||||||||||||||||| Sbjct: 39617 ttatcgtggtagttggtggaa 39597
>gb|AC123673.7| Mus musculus chromosome 1, clone RP23-258D13, complete sequence Length = 191401 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 agaatatgccatcttcacctgcag 451 |||||||||||| ||||||||||| Sbjct: 159822 agaatatgccatgttcacctgcag 159799
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 cttcacctgcagctgctgga 459 |||||||||||||||||||| Sbjct: 107815 cttcacctgcagctgctgga 107834
>ref|XM_519304.1| PREDICTED: Pan troglodytes similar to HMG-box transcription factor 1; HMG-box containing protein 1 (LOC463650), mRNA Length = 2352 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 842 atgagaatttgccatcttcacctg 865
>ref|XM_869575.1| PREDICTED: Bos taurus similar to glucosamine-6-phosphate deaminase 2 (LOC617337), partial mRNA Length = 211 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 caaatgccttgtgtgcgcct 401 |||||||||||||||||||| Sbjct: 73 caaatgccttgtgtgcgcct 54
>gb|BC017069.1| Homo sapiens HMG-box transcription factor 1, mRNA (cDNA clone MGC:9634 IMAGE:3914986), complete cds Length = 2857 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 299 atgagaatttgccatcttcacctg 322
>gb|BC022329.2| Homo sapiens HMG-box transcription factor 1, mRNA (cDNA clone MGC:22757 IMAGE:4278438), complete cds Length = 2679 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 128 atgagaatttgccatcttcacctg 151
>emb|CR456632.10| Zebrafish DNA sequence from clone CH211-86M22 in linkage group 12, complete sequence Length = 173539 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cagttcagttcattgtgaat 315 |||||||||||||||||||| Sbjct: 145945 cagttcagttcattgtgaat 145926
>gb|AC146037.1| Pan troglodytes BAC clone RP43-44A5 from 7, complete sequence Length = 177637 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 130532 atgagaatttgccatcttcacctg 130509
>gb|AC127561.4| Mus musculus BAC clone RP24-273G7 from chromosome 5, complete sequence Length = 202290 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ctttataactcaaatgcctt 391 |||||||||||||||||||| Sbjct: 157943 ctttataactcaaatgcctt 157924
>gb|AC122884.2| Mus musculus BAC clone RP23-88O13 from 5, complete sequence Length = 160295 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ctttataactcaaatgcctt 391 |||||||||||||||||||| Sbjct: 153994 ctttataactcaaatgcctt 154013
>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence Length = 256556 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tggcacaagcaggactgcaa 145 |||||||||||||||||||| Sbjct: 197565 tggcacaagcaggactgcaa 197584
>gb|AC073270.6| Homo sapiens BAC clone RP11-468B6 from 7, complete sequence Length = 188679 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ctgcgtattcatatgtttct 264 |||||||||||||||||||| Sbjct: 176830 ctgcgtattcatatgtttct 176849
>gb|AC103627.6| Mus musculus chromosome 1, clone RP24-241N3, complete sequence Length = 201487 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 agaatatgccatcttcacctgcag 451 |||||||||||| ||||||||||| Sbjct: 16338 agaatatgccatgttcacctgcag 16315
>emb|CR318663.12| Zebrafish DNA sequence from clone CH211-214J5 in linkage group 12, complete sequence Length = 215046 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cagttcagttcattgtgaat 315 |||||||||||||||||||| Sbjct: 28736 cagttcagttcattgtgaat 28755
>gb|AC161582.4| Monodelphis domestica, clone XX-27C10, complete sequence Length = 139570 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 aaacactaagcactctatta 369 |||||||||||||||||||| Sbjct: 113260 aaacactaagcactctatta 113241
>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland Research Institute) complete sequence Length = 147560 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cagttcagttcattgtgaat 315 |||||||||||||||||||| Sbjct: 124343 cagttcagttcattgtgaat 124362
>emb|CR860133.1| Pongo pygmaeus mRNA; cDNA DKFZp469C1019 (from clone DKFZp469C1019) Length = 2680 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 154 atgagaatttgccatcttcacctg 177
>ref|NM_012257.3| Homo sapiens HMG-box transcription factor 1 (HBP1), mRNA Length = 2858 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 299 atgagaatttgccatcttcacctg 322
>dbj|AK122785.1| Homo sapiens cDNA FLJ16340 fis, clone TESTI2011575, highly similar to Homo sapiens HMG box containing protein 1 mRNA Length = 2428 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 792 atgagaatttgccatcttcacctg 815
>emb|CR617831.1| full-length cDNA clone CS0DL010YA14 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2613 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 129 atgagaatttgccatcttcacctg 152
>emb|CR590649.1| full-length cDNA clone CS0DL001YI23 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1712 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 297 atgagaatttgccatcttcacctg 320
>gb|U55581.1|MMU55581 Mus musculus anti-DNA immunoglobulin light chain IgM mRNA, antibody 363s.57, partial cds Length = 343 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 aacctgaagatgttgccact 549 |||||||||||||||||||| Sbjct: 246 aacctgaagatgttgccact 265
>gb|AC155939.6| Mus musculus 10 BAC RP24-418P10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 158211 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 cacagacagggacatatgag 506 |||||||||||||||||||| Sbjct: 103851 cacagacagggacatatgag 103832
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 cttcacctgcagctgctgga 459 |||||||||||||||||||| Sbjct: 26594340 cttcacctgcagctgctgga 26594359
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 tgctggaatggaaattataa 472 |||||||||||||||||||| Sbjct: 858150 tgctggaatggaaattataa 858131
>gb|AC149286.4| Pan troglodytes BAC clone CH251-514L10 from chromosome 7, complete sequence Length = 180713 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 95372 atgagaatttgccatcttcacctg 95395
>gb|AC129664.7| Homo sapiens BAC clone RP11-237A9 from 4, complete sequence Length = 183495 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 cagacagggacatatgagtc 508 |||||||||||||||||||| Sbjct: 11688 cagacagggacatatgagtc 11669
>gb|AC127385.6| Homo sapiens BAC clone RP13-489M19 from 4, complete sequence Length = 262955 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 cagacagggacatatgagtc 508 |||||||||||||||||||| Sbjct: 107409 cagacagggacatatgagtc 107428
>gb|AF182038.1|AF182038 Homo sapiens HMG box containing protein 1a mRNA, complete cds Length = 2655 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 136 atgagaatttgccatcttcacctg 159
>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1442_E05 Length = 162407 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 tgctggaatggaaattataa 472 |||||||||||||||||||| Sbjct: 67358 tgctggaatggaaattataa 67339
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 tgctggaatggaaattataa 472 |||||||||||||||||||| Sbjct: 136281 tgctggaatggaaattataa 136262
>gb|AC154016.2| Mus musculus 6 BAC RP24-146M9 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159862 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tggcacaagcaggactgcaa 145 |||||||||||||||||||| Sbjct: 122949 tggcacaagcaggactgcaa 122930
>dbj|AK074353.1| Homo sapiens cDNA FLJ23773 fis, clone HEP20215, highly similar to Homo sapiens HMG box containing protein 1 mRNA Length = 2360 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 89 atgagaatttgccatcttcacctg 112
>gb|AC004492.1|AC004492 Homo sapiens BAC clone CTA-363E19 from 7q31.1, complete sequence Length = 165608 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 25528 atgagaatttgccatcttcacctg 25551
>dbj|AK068572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156K22, full insert sequence Length = 2460 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 cttcacctgcagctgctgga 459 |||||||||||||||||||| Sbjct: 111 cttcacctgcagctgctgga 92
>emb|AL158802.1|CNS01RGO Human chromosome 14 DNA sequence BAC C-2008K18 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194523 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ctttataactcaaatgcctt 391 |||||||||||||||||||| Sbjct: 132800 ctttataactcaaatgcctt 132819
>emb|AL139296.4|CNS01DXF Human chromosome 14 DNA sequence BAC C-2504D12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209710 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ctttataactcaaatgcctt 391 |||||||||||||||||||| Sbjct: 36879 ctttataactcaaatgcctt 36898
>emb|CT025667.9| Mouse DNA sequence from clone RP23-227F4 on chromosome 13, complete sequence Length = 206864 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 ccaaagggagctgttctttc 599 |||||||||||||||||||| Sbjct: 7303 ccaaagggagctgttctttc 7322
>gb|AF019214.1| Homo sapiens HMG box containing protein 1 mRNA, complete cds Length = 2640 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgagaatatgccatcttcacctg 448 |||||||| ||||||||||||||| Sbjct: 128 atgagaatttgccatcttcacctg 151
>gb|M84440.1|MUSIGLCC Mouse rearranged light chain variable region gene sequence Length = 360 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 aacctgaagatgttgccact 549 |||||||||||||||||||| Sbjct: 245 aacctgaagatgttgccact 264
>gb|M84436.1|MUSIGLBM Mouse rearranged light chain variable region gene sequence Length = 360 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 aacctgaagatgttgccact 549 |||||||||||||||||||| Sbjct: 245 aacctgaagatgttgccact 264
>gb|M84434.1|MUSIGLAC Mouse rearranged light chain variable region gene sequence Length = 360 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 aacctgaagatgttgccact 549 |||||||||||||||||||| Sbjct: 245 aacctgaagatgttgccact 264 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,612,585 Number of Sequences: 3902068 Number of extensions: 5612585 Number of successful extensions: 117155 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116812 Number of HSP's gapped (non-prelim): 340 length of query: 631 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 608 effective length of database: 17,143,297,704 effective search space: 10423125004032 effective search space used: 10423125004032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)