Clone Name | bags9h14 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197228.1| Oryza sativa (japonica cultivar-group) putative mitochondrial NAD+-dependent malic enzyme protein (OSJNBb0073N24.24), mRNA Length = 1766 Score = 509 bits (257), Expect = e-141 Identities = 383/425 (90%) Strand = Plus / Plus Query: 175 gaaggacacaatcaattctgggttctggacaaagatggccttattaccaaaagtagaaag 234 ||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 1057 gaagggcataatcaattctgggttctggacaaagatggacttattaccaaatccagaaag 1116 Query: 235 gatctggatccagccgttgctcgttttgctagaggttacggtcctgaagaggtcgaagat 294 | |||||||| || |||||||| | ||| ||||||| |||||||||||||| ||||| Sbjct: 1117 ggcctggatcctgcagttgctcgctatgccagaggttttggtcctgaagaggtgcaagat 1176 Query: 295 ctccatgagggggctagtcttgttgaagtggtcaagaaagtgaggcctcatgttctttta 354 |||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| Sbjct: 1177 ctccatgagggggctagtcttgttgaagtggtcaggaaagtgaagcctcatgtgctttta 1236 Query: 355 ggactatctggagttggcgggatatttaacgaggaggttctcaaggctatgaaagaatcc 414 ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct: 1237 ggactttctggagttgggggcatatttaatgaggaggttctcaaggctatgaaagaatcc 1296 Query: 415 gactccccctgccctgcaatttttgcaatgtccaacccaacaactaaagctgaatgtacg 474 || ||||| | ||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1297 gattcccctcgtcctgcaatttttgcaatgtccaacccaactactaaagccgaatgtact 1356 Query: 475 cctgaagatgtattcaagcatgttggtgaaaatgcagtatttgctagtggaagccctttc 534 ||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||| Sbjct: 1357 cctgaagatgtattcaaatatgttggagacaatgcagtatttgccagtggaagccctttc 1416 Query: 535 agtaatgttactttaagcaatggtagaaaaggctatgctaatcaagcaaacaacatgtat 594 |||||||| |||||| ||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 1417 agtaatgtcactttaggcaatggtagacaagggtacgctaatcaagcaaacaatatgtat 1476 Query: 595 ctgtt 599 ||||| Sbjct: 1477 ctgtt 1481 Score = 194 bits (98), Expect = 2e-46 Identities = 139/151 (92%), Gaps = 2/151 (1%) Strand = Plus / Plus Query: 1 tgctctanctggtctacttggnnnctgttagagcacaaggtcgacccctcgcagnatttt 60 ||||||| |||| |||||||| |||| ||||||||||||||||||||| | | ||||| Sbjct: 894 tgctctagctggcctacttggag-ctgtgagagcacaaggtcgacccctctctg-atttt 951 Query: 61 actaagcagaagatagttgtggtgggagctggaagtgctgggataggtgtgcttaacatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 952 actaagcagaagatagttgtggtgggagctggaagtgctgggataggtgtgcttaatatg 1011 Query: 121 gctaaacatgcaatgctaaggatgccaggga 151 |||||||| || ||||||||||||||||||| Sbjct: 1012 gctaaacaggcgatgctaaggatgccaggga 1042
>dbj|AK070828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M02, full insert sequence Length = 2357 Score = 509 bits (257), Expect = e-141 Identities = 383/425 (90%) Strand = Plus / Plus Query: 175 gaaggacacaatcaattctgggttctggacaaagatggccttattaccaaaagtagaaag 234 ||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 1297 gaagggcataatcaattctgggttctggacaaagatggacttattaccaaatccagaaag 1356 Query: 235 gatctggatccagccgttgctcgttttgctagaggttacggtcctgaagaggtcgaagat 294 | |||||||| || |||||||| | ||| ||||||| |||||||||||||| ||||| Sbjct: 1357 ggcctggatcctgcagttgctcgctatgccagaggttttggtcctgaagaggtgcaagat 1416 Query: 295 ctccatgagggggctagtcttgttgaagtggtcaagaaagtgaggcctcatgttctttta 354 |||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| Sbjct: 1417 ctccatgagggggctagtcttgttgaagtggtcaggaaagtgaagcctcatgtgctttta 1476 Query: 355 ggactatctggagttggcgggatatttaacgaggaggttctcaaggctatgaaagaatcc 414 ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct: 1477 ggactttctggagttgggggcatatttaatgaggaggttctcaaggctatgaaagaatcc 1536 Query: 415 gactccccctgccctgcaatttttgcaatgtccaacccaacaactaaagctgaatgtacg 474 || ||||| | ||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1537 gattcccctcgtcctgcaatttttgcaatgtccaacccaactactaaagccgaatgtact 1596 Query: 475 cctgaagatgtattcaagcatgttggtgaaaatgcagtatttgctagtggaagccctttc 534 ||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||| Sbjct: 1597 cctgaagatgtattcaaatatgttggagacaatgcagtatttgccagtggaagccctttc 1656 Query: 535 agtaatgttactttaagcaatggtagaaaaggctatgctaatcaagcaaacaacatgtat 594 |||||||| |||||| ||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 1657 agtaatgtcactttaggcaatggtagacaagggtacgctaatcaagcaaacaatatgtat 1716 Query: 595 ctgtt 599 ||||| Sbjct: 1717 ctgtt 1721 Score = 157 bits (79), Expect = 5e-35 Identities = 139/158 (87%), Gaps = 9/158 (5%) Strand = Plus / Plus Query: 1 tgctctanctggtctacttggnnnctgttagagcacaaggtcgacccctcgcagnatttt 60 ||||||| |||| |||||||| |||| ||||||||||||||||||||| | | ||||| Sbjct: 1127 tgctctagctggcctacttggag-ctgtgagagcacaaggtcgacccctctctg-atttt 1184 Query: 61 actaagcagaagatagttgtggtgggagctgga-------agtgctgggataggtgtgct 113 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1185 actaagcagaagatagttgtggtgggagctggaagaatccagtgctgggataggtgtgct 1244 Query: 114 taacatggctaaacatgcaatgctaaggatgccaggga 151 ||| ||||||||||| || ||||||||||||||||||| Sbjct: 1245 taatatggctaaacaggcgatgctaaggatgccaggga 1282
>dbj|AK101024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150D19, full insert sequence Length = 2454 Score = 502 bits (253), Expect = e-139 Identities = 382/425 (89%) Strand = Plus / Plus Query: 175 gaaggacacaatcaattctgggttctggacaaagatggccttattaccaaaagtagaaag 234 ||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 1378 gaagggcataatcaattctgggttctggacaaagatggacttattaccaaatccagaaag 1437 Query: 235 gatctggatccagccgttgctcgttttgctagaggttacggtcctgaagaggtcgaagat 294 | |||||||| | |||||||| | ||| ||||||| |||||||||||||| ||||| Sbjct: 1438 ggcctggatcctgtagttgctcgctatgccagaggttttggtcctgaagaggtgcaagat 1497 Query: 295 ctccatgagggggctagtcttgttgaagtggtcaagaaagtgaggcctcatgttctttta 354 |||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| Sbjct: 1498 ctccatgagggggctagtcttgttgaagtggtcaggaaagtgaagcctcatgtgctttta 1557 Query: 355 ggactatctggagttggcgggatatttaacgaggaggttctcaaggctatgaaagaatcc 414 ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct: 1558 ggactttctggagttgggggcatatttaatgaggaggttctcaaggctatgaaagaatcc 1617 Query: 415 gactccccctgccctgcaatttttgcaatgtccaacccaacaactaaagctgaatgtacg 474 || ||||| | ||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1618 gattcccctcgtcctgcaatttttgcaatgtccaacccaactactaaagccgaatgtact 1677 Query: 475 cctgaagatgtattcaagcatgttggtgaaaatgcagtatttgctagtggaagccctttc 534 ||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||| Sbjct: 1678 cctgaagatgtattcaaatatgttggagacaatgcagtatttgccagtggaagccctttc 1737 Query: 535 agtaatgttactttaagcaatggtagaaaaggctatgctaatcaagcaaacaacatgtat 594 |||||||| |||||| ||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 1738 agtaatgtcactttaggcaatggtagacaagggtacgctaatcaagcaaacaatatgtat 1797 Query: 595 ctgtt 599 ||||| Sbjct: 1798 ctgtt 1802 Score = 194 bits (98), Expect = 2e-46 Identities = 139/151 (92%), Gaps = 2/151 (1%) Strand = Plus / Plus Query: 1 tgctctanctggtctacttggnnnctgttagagcacaaggtcgacccctcgcagnatttt 60 ||||||| |||| |||||||| |||| ||||||||||||||||||||| | | ||||| Sbjct: 1215 tgctctagctggcctacttggag-ctgtgagagcacaaggtcgacccctctctg-atttt 1272 Query: 61 actaagcagaagatagttgtggtgggagctggaagtgctgggataggtgtgcttaacatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1273 actaagcagaagatagttgtggtgggagctggaagtgctgggataggtgtgcttaatatg 1332 Query: 121 gctaaacatgcaatgctaaggatgccaggga 151 |||||||| || ||||||||||||||||||| Sbjct: 1333 gctaaacaggcgatgctaaggatgccaggga 1363
>dbj|AK058254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C11, full insert sequence Length = 769 Score = 216 bits (109), Expect = 6e-53 Identities = 151/165 (91%) Strand = Plus / Plus Query: 435 ttttgcaatgtccaacccaacaactaaagctgaatgtacgcctgaagatgtattcaagca 494 ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| | Sbjct: 3 ttttgcaatgtccaacccaactactaaagccgaatgtactcctgaagatgtattcaaata 62 Query: 495 tgttggtgaaaatgcagtatttgctagtggaagccctttcagtaatgttactttaagcaa 554 |||||| || |||||||||||||| ||||||||||||||||||||||| |||||| |||| Sbjct: 63 tgttggagacaatgcagtatttgccagtggaagccctttcagtaatgtcactttaggcaa 122 Query: 555 tggtagaaaaggctatgctaatcaagcaaacaacatgtatctgtt 599 ||||||| |||| || ||||||||||||||||| ||||||||||| Sbjct: 123 tggtagacaagggtacgctaatcaagcaaacaatatgtatctgtt 167
>gb|AY105653.1| Zea mays PCO079171 mRNA sequence Length = 862 Score = 145 bits (73), Expect = 2e-31 Identities = 133/153 (86%) Strand = Plus / Plus Query: 444 gtccaacccaacaactaaagctgaatgtacgcctgaagatgtattcaagcatgttggtga 503 ||||||||| || |||||||||||||| || || || |||||||||||||||||||| || Sbjct: 12 gtccaaccctactactaaagctgaatgcactcccgatgatgtattcaagcatgttggaga 71 Query: 504 aaatgcagtatttgctagtggaagccctttcagtaatgttactttaagcaatggtagaaa 563 || || |||||||||||||||||||||| ||||||||| ||||| | ||||||| | Sbjct: 72 taaagcgatatttgctagtggaagcccttttagtaatgtttctttaggaaatggtaaatc 131 Query: 564 aggctatgctaatcaagcaaacaacatgtatct 596 || ||||||||||||||||||||||||||||| Sbjct: 132 tggttatgctaatcaagcaaacaacatgtatct 164
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 214 cttattaccaaaagtagaaaggatctggatccagccgttgctcgttttgctagaggttac 273 |||||||||||| ||||||| |||||||| || |||||||| | ||| ||||||| Sbjct: 80 cttattaccaaatccagaaagggcctggatcctgcagttgctcgctatgccagaggtttt 139 Query: 274 ggtcctgaagaggtcgaagatctccatgagggggctagtcttgttgaagtggt 326 |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 140 ggtcctgaagaggtgcaagatctccatgagggggctagtcttgttgaagtggt 192 Score = 111 bits (56), Expect = 3e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 466 gaatgtacgcctgaagatgtattcaagcatgttggtgaaaatgcagtatttgctagtgga 525 |||||||| ||||||||||||||||| ||||||| || |||||||||||||| |||||| Sbjct: 1111 gaatgtactcctgaagatgtattcaaatatgttggagacaatgcagtatttgccagtgga 1170 Query: 526 agccctttcagtaatgttacttta 549 ||||||||||||||||| |||||| Sbjct: 1171 agccctttcagtaatgtcacttta 1194 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 389 aggttctcaaggctatgaaagaatccgactccccctgccctgcaatttttgcaatgtcca 448 |||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct: 954 aggttctcaaggctatgaaagaatccgattcccctcgtcctgcaatttttgcaatgtcca 1013 Query: 449 acccaacaactaaag 463 ||||||| ||||||| Sbjct: 1014 acccaactactaaag 1028 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 324 ggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcgggatatttaa 383 ||||| |||||||| ||||||||| ||||||||||| ||||||||||| || |||||||| Sbjct: 320 ggtcaggaaagtgaagcctcatgtgcttttaggactttctggagttgggggcatatttaa 379 Query: 384 cgaggaggt 392 |||||||| Sbjct: 380 tgaggaggt 388 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 551 gcaatggtagaaaaggctatgctaatcaagcaaacaacatgtatctgtt 599 ||||||||||| |||| || ||||||||||||||||| ||||||||||| Sbjct: 1283 gcaatggtagacaagggtacgctaatcaagcaaacaatatgtatctgtt 1331
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 214 cttattaccaaaagtagaaaggatctggatccagccgttgctcgttttgctagaggttac 273 |||||||||||| ||||||| |||||||| || |||||||| | ||| ||||||| Sbjct: 65938 cttattaccaaatccagaaagggcctggatcctgcagttgctcgctatgccagaggtttt 65997 Query: 274 ggtcctgaagaggtcgaagatctccatgagggggctagtcttgttgaagtggt 326 |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 65998 ggtcctgaagaggtgcaagatctccatgagggggctagtcttgttgaagtggt 66050 Score = 111 bits (56), Expect = 3e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 466 gaatgtacgcctgaagatgtattcaagcatgttggtgaaaatgcagtatttgctagtgga 525 |||||||| ||||||||||||||||| ||||||| || |||||||||||||| |||||| Sbjct: 66969 gaatgtactcctgaagatgtattcaaatatgttggagacaatgcagtatttgccagtgga 67028 Query: 526 agccctttcagtaatgttacttta 549 ||||||||||||||||| |||||| Sbjct: 67029 agccctttcagtaatgtcacttta 67052 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 389 aggttctcaaggctatgaaagaatccgactccccctgccctgcaatttttgcaatgtcca 448 |||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct: 66812 aggttctcaaggctatgaaagaatccgattcccctcgtcctgcaatttttgcaatgtcca 66871 Query: 449 acccaacaactaaag 463 ||||||| ||||||| Sbjct: 66872 acccaactactaaag 66886 Score = 107 bits (54), Expect = 4e-20 Identities = 86/95 (90%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 1 tgctctanctggtctacttggnnnctgttagagcacaaggtcgacccctcgcagnatttt 60 ||||||| |||| |||||||| |||| ||||||||||||||||||||| | | ||||| Sbjct: 65465 tgctctagctggcctacttggag-ctgtgagagcacaaggtcgacccctctctg-atttt 65522 Query: 61 actaagcagaagatagttgtggtgggagctggaag 95 ||||||||||||||||||||||||||||||||||| Sbjct: 65523 actaagcagaagatagttgtggtgggagctggaag 65557 Score = 91.7 bits (46), Expect = 2e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 94 agtgctgggataggtgtgcttaacatggctaaacatgcaatgctaaggatgccaggga 151 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 65664 agtgctgggataggtgtgcttaatatggctaaacaggcgatgctaaggatgccaggga 65721 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 324 ggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcgggatatttaa 383 ||||| |||||||| ||||||||| ||||||||||| ||||||||||| || |||||||| Sbjct: 66178 ggtcaggaaagtgaagcctcatgtgcttttaggactttctggagttgggggcatatttaa 66237 Query: 384 cgaggaggt 392 |||||||| Sbjct: 66238 tgaggaggt 66246 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 551 gcaatggtagaaaaggctatgctaatcaagcaaacaacatgtatctgtt 599 ||||||||||| |||| || ||||||||||||||||| ||||||||||| Sbjct: 67141 gcaatggtagacaagggtacgctaatcaagcaaacaatatgtatctgtt 67189 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 175 gaaggacacaatcaattctgggttctggacaaagatg 211 ||||| || |||||||||||||||||||||||||||| Sbjct: 65736 gaagggcataatcaattctgggttctggacaaagatg 65772
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 214 cttattaccaaaagtagaaaggatctggatccagccgttgctcgttttgctagaggttac 273 |||||||||||| ||||||| |||||||| || |||||||| | ||| ||||||| Sbjct: 18704660 cttattaccaaatccagaaagggcctggatcctgcagttgctcgctatgccagaggtttt 18704719 Query: 274 ggtcctgaagaggtcgaagatctccatgagggggctagtcttgttgaagtggt 326 |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 18704720 ggtcctgaagaggtgcaagatctccatgagggggctagtcttgttgaagtggt 18704772 Score = 111 bits (56), Expect = 3e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 466 gaatgtacgcctgaagatgtattcaagcatgttggtgaaaatgcagtatttgctagtgga 525 |||||||| ||||||||||||||||| ||||||| || |||||||||||||| |||||| Sbjct: 18705691 gaatgtactcctgaagatgtattcaaatatgttggagacaatgcagtatttgccagtgga 18705750 Query: 526 agccctttcagtaatgttacttta 549 ||||||||||||||||| |||||| Sbjct: 18705751 agccctttcagtaatgtcacttta 18705774 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 389 aggttctcaaggctatgaaagaatccgactccccctgccctgcaatttttgcaatgtcca 448 |||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct: 18705534 aggttctcaaggctatgaaagaatccgattcccctcgtcctgcaatttttgcaatgtcca 18705593 Query: 449 acccaacaactaaag 463 ||||||| ||||||| Sbjct: 18705594 acccaactactaaag 18705608 Score = 107 bits (54), Expect = 4e-20 Identities = 86/95 (90%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 1 tgctctanctggtctacttggnnnctgttagagcacaaggtcgacccctcgcagnatttt 60 ||||||| |||| |||||||| |||| ||||||||||||||||||||| | | ||||| Sbjct: 18704187 tgctctagctggcctacttggag-ctgtgagagcacaaggtcgacccctctctg-atttt 18704244 Query: 61 actaagcagaagatagttgtggtgggagctggaag 95 ||||||||||||||||||||||||||||||||||| Sbjct: 18704245 actaagcagaagatagttgtggtgggagctggaag 18704279 Score = 91.7 bits (46), Expect = 2e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 94 agtgctgggataggtgtgcttaacatggctaaacatgcaatgctaaggatgccaggga 151 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 18704386 agtgctgggataggtgtgcttaatatggctaaacaggcgatgctaaggatgccaggga 18704443 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 324 ggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcgggatatttaa 383 ||||| |||||||| ||||||||| ||||||||||| ||||||||||| || |||||||| Sbjct: 18704900 ggtcaggaaagtgaagcctcatgtgcttttaggactttctggagttgggggcatatttaa 18704959 Query: 384 cgaggaggt 392 |||||||| Sbjct: 18704960 tgaggaggt 18704968 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 551 gcaatggtagaaaaggctatgctaatcaagcaaacaacatgtatctgtt 599 ||||||||||| |||| || ||||||||||||||||| ||||||||||| Sbjct: 18705863 gcaatggtagacaagggtacgctaatcaagcaaacaatatgtatctgtt 18705911 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 175 gaaggacacaatcaattctgggttctggacaaagatg 211 ||||| || |||||||||||||||||||||||||||| Sbjct: 18704458 gaagggcataatcaattctgggttctggacaaagatg 18704494
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 214 cttattaccaaaagtagaaaggatctggatccagccgttgctcgttttgctagaggttac 273 |||||||||||| ||||||| |||||||| || |||||||| | ||| ||||||| Sbjct: 18715513 cttattaccaaatccagaaagggcctggatcctgcagttgctcgctatgccagaggtttt 18715572 Query: 274 ggtcctgaagaggtcgaagatctccatgagggggctagtcttgttgaagtggt 326 |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 18715573 ggtcctgaagaggtgcaagatctccatgagggggctagtcttgttgaagtggt 18715625 Score = 111 bits (56), Expect = 3e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 466 gaatgtacgcctgaagatgtattcaagcatgttggtgaaaatgcagtatttgctagtgga 525 |||||||| ||||||||||||||||| ||||||| || |||||||||||||| |||||| Sbjct: 18716544 gaatgtactcctgaagatgtattcaaatatgttggagacaatgcagtatttgccagtgga 18716603 Query: 526 agccctttcagtaatgttacttta 549 ||||||||||||||||| |||||| Sbjct: 18716604 agccctttcagtaatgtcacttta 18716627 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 389 aggttctcaaggctatgaaagaatccgactccccctgccctgcaatttttgcaatgtcca 448 |||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct: 18716387 aggttctcaaggctatgaaagaatccgattcccctcgtcctgcaatttttgcaatgtcca 18716446 Query: 449 acccaacaactaaag 463 ||||||| ||||||| Sbjct: 18716447 acccaactactaaag 18716461 Score = 107 bits (54), Expect = 4e-20 Identities = 86/95 (90%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 1 tgctctanctggtctacttggnnnctgttagagcacaaggtcgacccctcgcagnatttt 60 ||||||| |||| |||||||| |||| ||||||||||||||||||||| | | ||||| Sbjct: 18715040 tgctctagctggcctacttggag-ctgtgagagcacaaggtcgacccctctctg-atttt 18715097 Query: 61 actaagcagaagatagttgtggtgggagctggaag 95 ||||||||||||||||||||||||||||||||||| Sbjct: 18715098 actaagcagaagatagttgtggtgggagctggaag 18715132 Score = 91.7 bits (46), Expect = 2e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 94 agtgctgggataggtgtgcttaacatggctaaacatgcaatgctaaggatgccaggga 151 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 18715239 agtgctgggataggtgtgcttaatatggctaaacaggcgatgctaaggatgccaggga 18715296 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 324 ggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcgggatatttaa 383 ||||| |||||||| ||||||||| ||||||||||| ||||||||||| || |||||||| Sbjct: 18715753 ggtcaggaaagtgaagcctcatgtgcttttaggactttctggagttgggggcatatttaa 18715812 Query: 384 cgaggaggt 392 |||||||| Sbjct: 18715813 tgaggaggt 18715821 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 551 gcaatggtagaaaaggctatgctaatcaagcaaacaacatgtatctgtt 599 ||||||||||| |||| || ||||||||||||||||| ||||||||||| Sbjct: 18716716 gcaatggtagacaagggtacgctaatcaagcaaacaatatgtatctgtt 18716764 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 175 gaaggacacaatcaattctgggttctggacaaagatg 211 ||||| || |||||||||||||||||||||||||||| Sbjct: 18715311 gaagggcataatcaattctgggttctggacaaagatg 18715347
>ref|NM_116281.2| Arabidopsis thaliana malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor AT4G00570 mRNA, complete cds Length = 2217 Score = 79.8 bits (40), Expect = 9e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 316 gttgaagtggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcggg 375 ||||||||||| |||||||||||||| ||||||||| | || ||||||||||||| || Sbjct: 1305 gttgaagtggtgaagaaagtgaggccacatgttcttcttggtttatctggagttggtggt 1364 Query: 376 atatttaacgaggaggttctcaaggctatgaaagaatccgactc 419 || ||||| || || ||||||||||| ||| |||||| ||||| Sbjct: 1365 atctttaatgaagaagttctcaaggcgatgcgagaatctgactc 1408 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 70 aagatagttgtggtgggagctggaagtgctggg 102 ||||| ||||||||||||||||||||||||||| Sbjct: 1086 aagattgttgtggtgggagctggaagtgctggg 1118
>gb|BT000075.1| Arabidopsis thaliana putative malate oxidoreductase (At4g00570) mRNA, complete cds Length = 1964 Score = 79.8 bits (40), Expect = 9e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 316 gttgaagtggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcggg 375 ||||||||||| |||||||||||||| ||||||||| | || ||||||||||||| || Sbjct: 1213 gttgaagtggtgaagaaagtgaggccacatgttcttcttggtttatctggagttggtggt 1272 Query: 376 atatttaacgaggaggttctcaaggctatgaaagaatccgactc 419 || ||||| || || ||||||||||| ||| |||||| ||||| Sbjct: 1273 atctttaatgaagaagttctcaaggcgatgcgagaatctgactc 1316 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 70 aagatagttgtggtgggagctggaagtgctggg 102 ||||| ||||||||||||||||||||||||||| Sbjct: 994 aagattgttgtggtgggagctggaagtgctggg 1026
>gb|BT008375.1| Arabidopsis thaliana At4g00570 gene, complete cds Length = 1824 Score = 79.8 bits (40), Expect = 9e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 316 gttgaagtggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcggg 375 ||||||||||| |||||||||||||| ||||||||| | || ||||||||||||| || Sbjct: 1213 gttgaagtggtgaagaaagtgaggccacatgttcttcttggtttatctggagttggtggt 1272 Query: 376 atatttaacgaggaggttctcaaggctatgaaagaatccgactc 419 || ||||| || || ||||||||||| ||| |||||| ||||| Sbjct: 1273 atctttaatgaagaagttctcaaggcgatgcgagaatctgactc 1316 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 70 aagatagttgtggtgggagctggaagtgctggg 102 ||||| ||||||||||||||||||||||||||| Sbjct: 994 aagattgttgtggtgggagctggaagtgctggg 1026
>gb|AY128396.1| Arabidopsis thaliana putative malate oxidoreductase (At4g00570) mRNA, complete cds Length = 2201 Score = 79.8 bits (40), Expect = 9e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 316 gttgaagtggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcggg 375 ||||||||||| |||||||||||||| ||||||||| | || ||||||||||||| || Sbjct: 1289 gttgaagtggtgaagaaagtgaggccacatgttcttcttggtttatctggagttggtggt 1348 Query: 376 atatttaacgaggaggttctcaaggctatgaaagaatccgactc 419 || ||||| || || ||||||||||| ||| |||||| ||||| Sbjct: 1349 atctttaatgaagaagttctcaaggcgatgcgagaatctgactc 1392 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 70 aagatagttgtggtgggagctggaagtgctggg 102 ||||| ||||||||||||||||||||||||||| Sbjct: 1070 aagattgttgtggtgggagctggaagtgctggg 1102
>emb|BX828176.1|CNS0A2G8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZA02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2159 Score = 79.8 bits (40), Expect = 9e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 316 gttgaagtggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcggg 375 ||||||||||| |||||||||||||| ||||||||| | || ||||||||||||| || Sbjct: 1296 gttgaagtggtgaagaaagtgaggccacatgttcttcttggtttatctggagttggtggt 1355 Query: 376 atatttaacgaggaggttctcaaggctatgaaagaatccgactc 419 || ||||| || || ||||||||||| ||| |||||| ||||| Sbjct: 1356 atctttaatgaagaagttctcaaggcgatgcgagaatctgactc 1399 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 70 aagatagttgtggtgggagctggaagtgctggg 102 ||||| ||||||||||||||||||||||||||| Sbjct: 1077 aagattgttgtggtgggagctggaagtgctggg 1109
>gb|BT002046.1| Arabidopsis thaliana putative malate oxidoreductase (At4g00570) mRNA, complete cds Length = 2169 Score = 79.8 bits (40), Expect = 9e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 316 gttgaagtggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcggg 375 ||||||||||| |||||||||||||| ||||||||| | || ||||||||||||| || Sbjct: 1303 gttgaagtggtgaagaaagtgaggccacatgttcttcttggtttatctggagttggtggt 1362 Query: 376 atatttaacgaggaggttctcaaggctatgaaagaatccgactc 419 || ||||| || || ||||||||||| ||| |||||| ||||| Sbjct: 1363 atctttaatgaagaagttctcaaggcgatgcgagaatctgactc 1406 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 70 aagatagttgtggtgggagctggaagtgctggg 102 ||||| ||||||||||||||||||||||||||| Sbjct: 1084 aagattgttgtggtgggagctggaagtgctggg 1116
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 328 aagaaagtgaggcctcatgttcttttaggactatctggagttgg 371 |||||||||||||| ||||||||| | || ||||||||||||| Sbjct: 50762 aagaaagtgaggccacatgttcttcttggtttatctggagttgg 50719 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 70 aagatagttgtggtgggagctggaag 95 ||||| |||||||||||||||||||| Sbjct: 51589 aagattgttgtggtgggagctggaag 51564
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 328 aagaaagtgaggcctcatgttcttttaggactatctggagttgg 371 |||||||||||||| ||||||||| | || ||||||||||||| Sbjct: 31888 aagaaagtgaggccacatgttcttcttggtttatctggagttgg 31845 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 70 aagatagttgtggtgggagctggaag 95 ||||| |||||||||||||||||||| Sbjct: 32715 aagattgttgtggtgggagctggaag 32690
>ref|NM_126936.2| Arabidopsis thaliana malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor AT2G13560 mRNA, complete cds Length = 2113 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Plus Query: 427 cctgcaatttttgcaatgtccaacccaacaactaaagctgaatgtacgcctgaagatg 484 ||||| || ||||||||||| ||||| |||| || |||||||| |||||| |||||| Sbjct: 1494 cctgctatatttgcaatgtcaaaccccacaaaaaatgctgaatgcacgcctcaagatg 1551
>gb|BT000996.1| Arabidopsis thaliana clone U19925 putative malate oxidoreductase (malic enzyme) (At2g13560) mRNA, complete cds Length = 1902 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Plus Query: 427 cctgcaatttttgcaatgtccaacccaacaactaaagctgaatgtacgcctgaagatg 484 ||||| || ||||||||||| ||||| |||| || |||||||| |||||| |||||| Sbjct: 1369 cctgctatatttgcaatgtcaaaccccacaaaaaatgctgaatgcacgcctcaagatg 1426
>gb|AY091108.1| Arabidopsis thaliana putative malate oxidoreductase (malic enzyme) (At2g13560) mRNA, complete cds Length = 2181 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Plus Query: 427 cctgcaatttttgcaatgtccaacccaacaactaaagctgaatgtacgcctgaagatg 484 ||||| || ||||||||||| ||||| |||| || |||||||| |||||| |||||| Sbjct: 1495 cctgctatatttgcaatgtcaaaccccacaaaaaatgctgaatgcacgcctcaagatg 1552
>gb|AY107471.1| Zea mays PCO115183 mRNA sequence Length = 1366 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 430 gcaatttttgcaatgtccaacccaac 455 |||||||||||||||||||| ||||| Sbjct: 508 gcaatttttgcaatgtccaatccaac 533
>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence Length = 205784 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 ccgactccccctgccctgcaa 433 ||||||||||||||||||||| Sbjct: 2708 ccgactccccctgccctgcaa 2688
>emb|AL391838.9| Human DNA sequence from clone RP11-307O11 on chromosome 13, complete sequence Length = 146127 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 cccctgccctgcaatttttgc 440 ||||||||||||||||||||| Sbjct: 81962 cccctgccctgcaatttttgc 81942
>emb|AL009031.1|HS467D16 Human DNA sequence from clone RP3-467D16 on chromosome 6p22.3-24.1 Contains the 5' end of the SCA1 gene for spinocerebellar ataxia 1 (olivopontocerebellar ataxia 1, autosomal dominant, ataxin 1) with a poly-glutamine (CAG repeat) polymorphism and the 3' part of the GMPR gene for GMP reductase, Guanosine 5'-monophosphate oxidoreductase, complete sequence Length = 143583 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 aagccctttcagtaatgttac 545 ||||||||||||||||||||| Sbjct: 23658 aagccctttcagtaatgttac 23638
>emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mitochondrial NAD+-dependent malic enzyme (malate dehydrogenase) Length = 2251 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 427 cctgcaatttttgcaatgtccaacccaac 455 |||||||||||| ||||||| |||||||| Sbjct: 1406 cctgcaatttttccaatgtcaaacccaac 1434
>emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59kDa subunit of the NAD+-dependent malic enzyme Length = 2188 Score = 42.1 bits (21), Expect = 2.1 Identities = 75/93 (80%) Strand = Plus / Plus Query: 318 tgaagtggtcaagaaagtgaggcctcatgttcttttaggactatctggagttggcgggat 377 |||||||||||| || |||| ||||||||| ||| | || | || |||||||| || || Sbjct: 1264 tgaagtggtcaaaaaggtgaagcctcatgtacttcttggtttgtcaggagttggaggcat 1323 Query: 378 atttaacgaggaggttctcaaggctatgaaaga 410 |||| | |||||||| || | ||| |||||||| Sbjct: 1324 atttcatgaggaggtgctgagggccatgaaaga 1356
>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence Length = 133862 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 576 tcaagcaaacaacatgtatct 596 ||||||||||||||||||||| Sbjct: 67552 tcaagcaaacaacatgtatct 67572
>gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224566 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 atgctaaggatgccagggacc 153 ||||||||||||||||||||| Sbjct: 46076 atgctaaggatgccagggacc 46096
>gb|AC108070.2| Homo sapiens BAC clone RP11-638P8 from 2, complete sequence Length = 92113 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 tgctaaggatgccagggaccc 154 ||||||||||||||||||||| Sbjct: 44868 tgctaaggatgccagggaccc 44848
>gb|AC135608.7| Mus musculus strain C57BL/6J clone rp23-408d14, complete sequence Length = 213801 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 atgctaaggatgccagggacc 153 ||||||||||||||||||||| Sbjct: 112709 atgctaaggatgccagggacc 112729
>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence Length = 98620 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 576 tcaagcaaacaacatgtatct 596 ||||||||||||||||||||| Sbjct: 9457 tcaagcaaacaacatgtatct 9477
>gb|BC084421.1| Xenopus laevis hypothetical LOC495193, mRNA (cDNA clone MGC:86381 IMAGE:7011145), complete cds Length = 1160 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 cctttcagtaatgttacttta 549 ||||||||||||||||||||| Sbjct: 1082 cctttcagtaatgttacttta 1102
>gb|AC124711.3| Mus musculus BAC clone RP24-100M12 from 12, complete sequence Length = 225134 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 ccgactccccctgccctgcaa 433 ||||||||||||||||||||| Sbjct: 216866 ccgactccccctgccctgcaa 216846
>gb|AC002326.1|AC002326 Genomic sequence from Human 6, complete sequence Length = 148750 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 aagccctttcagtaatgttac 545 ||||||||||||||||||||| Sbjct: 34485 aagccctttcagtaatgttac 34465
>emb|AL354710.17| Human DNA sequence from clone RP11-65N13 on chromosome 9, complete sequence Length = 131708 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 ctggaagtgctgggataggtg 109 ||||||||||||||||||||| Sbjct: 58984 ctggaagtgctgggataggtg 59004
>ref|NM_127548.2| Arabidopsis thaliana malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor AT2G19900 mRNA, complete cds Length = 2003 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 tttgctagtggaagcccttt 533 |||||||||||||||||||| Sbjct: 1425 tttgctagtggaagcccttt 1444
>gb|AF092870.1| Lagidium viscacia microsatellite LV4 Length = 229 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 tgaagtggtcaagaaagtga 337 |||||||||||||||||||| Sbjct: 198 tgaagtggtcaagaaagtga 179
>ref|XM_422891.1| PREDICTED: Gallus gallus similar to Mibp-pen protein (LOC425099), partial mRNA Length = 577 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 gaggtcgaagatctccatgagggg 306 ||||||||||| |||||||||||| Sbjct: 530 gaggtcgaagagctccatgagggg 507
>gb|AF127019.7| Homo sapiens chromosome 8 clone GS1-188e4 map p23.2, complete sequence Length = 182548 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 taagcaatggtagaaaaggc 567 |||||||||||||||||||| Sbjct: 7925 taagcaatggtagaaaaggc 7944
>ref|XM_500326.1| Yarrowia lipolytica CLIB122, YALI0A21307g predicted mRNA Length = 1728 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tgaagaggtcgaagatctccatga 302 |||||||| ||||||||||||||| Sbjct: 1567 tgaagagggcgaagatctccatga 1544
>emb|AL671968.17| Mouse DNA sequence from clone RP23-191E3 on chromosome 11 Contains four novel genes, an eukaryotic translation elongation factor 2 (Eef2) pseudogene, a Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (Fau) pseudogene, the Eif4enif1 gene for eukaryotic translation initiation factor 4E nuclear import factor 1, the Drg1 gene for developmentally regulated GTP binding protein 1, the Zfp278 gene for zinc finger protein 278, the 3' end of the Limk2 gene LIM motif-containing protein kinase 2 and five CpG islands, complete sequence Length = 214546 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aagtgctgggataggtgtgc 112 |||||||||||||||||||| Sbjct: 146491 aagtgctgggataggtgtgc 146510
>emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chromosome 11 Contains a general transcription factor II A, 1 (Gtf2a1) pseudogene, the 3' end of the Pkd1l1 gene for polycystic kidney disease 1 like 1 and a heterogeneous nuclear ribonucleoprotein A3 (Hnrpa3) pseudogene, complete sequence Length = 235198 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 aacccaacaactaaagctga 467 |||||||||||||||||||| Sbjct: 4058 aacccaacaactaaagctga 4039
>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence Length = 126386 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 tttgctagtggaagcccttt 533 |||||||||||||||||||| Sbjct: 30661 tttgctagtggaagcccttt 30680
>gb|AY062734.1| Arabidopsis thaliana malate oxidoreductase (malic enzyme) (At2g19900; F6F22.7) mRNA, complete cds Length = 2003 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 tttgctagtggaagcccttt 533 |||||||||||||||||||| Sbjct: 1425 tttgctagtggaagcccttt 1444
>gb|AC012078.3|AC012078 Homo sapiens BAC clone RP11-539O22 from Y, complete sequence Length = 176872 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 187 caattctgggttctggacaaagatggcc 214 ||||||||||||||||| || ||||||| Sbjct: 163936 caattctgggttctggagaatgatggcc 163963
>gb|BT003371.1| Arabidopsis thaliana malate oxidoreductase (malic enzyme) (At2g19900) mRNA, complete cds Length = 1795 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 tttgctagtggaagcccttt 533 |||||||||||||||||||| Sbjct: 1375 tttgctagtggaagcccttt 1394
>gb|AC006210.4| Homo sapiens X BAC GS1-309P15 (Genome Systems Human BAC Library) complete sequence Length = 185638 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 gctagtggaagccctttcag 536 |||||||||||||||||||| Sbjct: 115630 gctagtggaagccctttcag 115611
>emb|BX511240.5| Zebrafish DNA sequence from clone CH211-113H10, complete sequence Length = 175187 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ccctgcaatttttgcaatgt 445 |||||||||||||||||||| Sbjct: 132496 ccctgcaatttttgcaatgt 132477
>dbj|AB054125.1| Cobitis striata mitochondrial DNA, complete genome Length = 16572 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 ccaacccaacaactaaagct 465 |||||||||||||||||||| Sbjct: 14252 ccaacccaacaactaaagct 14271
>emb|CT573324.3| CH251-10E6, complete sequence Length = 169419 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 gctagtggaagccctttcag 536 |||||||||||||||||||| Sbjct: 111839 gctagtggaagccctttcag 111820
>gb|AC002509.1|AC002509 Homo sapiens chromosome Y, clone 2Y, complete sequence Length = 142099 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 187 caattctgggttctggacaaagatggcc 214 ||||||||||||||||| || ||||||| Sbjct: 28842 caattctgggttctggagaatgatggcc 28869
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tgaagaggtcgaagatctccatga 302 |||||||| ||||||||||||||| Sbjct: 2276502 tgaagagggcgaagatctccatga 2276525 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,974,506 Number of Sequences: 3902068 Number of extensions: 5974506 Number of successful extensions: 93099 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 92925 Number of HSP's gapped (non-prelim): 168 length of query: 599 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 576 effective length of database: 17,143,297,704 effective search space: 9874539477504 effective search space used: 9874539477504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)