>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score =  141 bits (355), Expect = 2e-33
 Identities = 69/187 (36%), Positives = 112/187 (59%)
 Frame = +3

Query: 9   PXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANEL 188
           P   T+  +I   C+ G +E A+  FE M+ E L+P  + YN+LI G+C      +A EL
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463

Query: 189 WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCR 368
             +M  + I  N I ++ +IDSHC++G+V ++    + M+  G+ PN++TYN++I GYC 
Sbjct: 464 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCL 523

Query: 369 SGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVT 548
           +G + +  + L  M    + P+ +TY+TLI+GY K  +M +A  L   ME+  V PD +T
Sbjct: 524 AGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583

Query: 549 YNMIING 569
           YN+I+ G
Sbjct: 584 YNIILQG 590



 Score =  135 bits (341), Expect = 7e-32
 Identities = 58/198 (29%), Positives = 117/198 (59%)
 Frame = +3

Query: 6   PPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANE 185
           PP + ++TT+I+G+ +EG+ +KA   +  ML   + PD+VTYN++I  +C+   + KA E
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAME 252

Query: 186 LWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYC 365
           + + M    + P+ +TY+ ++  +C  GQ  +A GFL +M + G+ P+++TY+ ++   C
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLC 312

Query: 366 RSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTV 545
           ++G  ++ ++    M    + P++ TY TL+ GY  +  + E   LL++M    + PD  
Sbjct: 313 KNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHY 372

Query: 546 TYNMIINGFSVHGNMQEA 599
            ++++I  ++  G + +A
Sbjct: 373 VFSILICAYAKQGKVDQA 390



 Score =  129 bits (324), Expect = 7e-30
 Identities = 67/199 (33%), Positives = 116/199 (58%)
 Frame = +3

Query: 3   VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKAN 182
           + P    F+ LI  Y ++G +++A+ +F  M  + L P+ VTY  +I  +C+ G +  A 
Sbjct: 367 IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 426

Query: 183 ELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGY 362
             ++ M  + + P +I Y+ LI   C   + + A   + EM+++GI  N + +NSII  +
Sbjct: 427 LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH 486

Query: 363 CRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDT 542
           C+ G V++ ++  + M    V P++ITYNTLI+GY    KM EA  LL+ M +  ++P+T
Sbjct: 487 CKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNT 546

Query: 543 VTYNMIINGFSVHGNMQEA 599
           VTY+ +ING+     M++A
Sbjct: 547 VTYSTLINGYCKISRMEDA 565



 Score =  123 bits (308), Expect = 5e-28
 Identities = 60/197 (30%), Positives = 111/197 (56%)
 Frame = +3

Query: 9   PXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANEL 188
           P + T+ TL+ GY  +G + +   L + M+   + PD   ++ LI    +QG + +A  +
Sbjct: 334 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLV 393

Query: 189 WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCR 368
           +  M  Q + PN +TY  +I   C+ G+V+DA  + ++MI++G+ P  + YNS+I G C 
Sbjct: 394 FSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCT 453

Query: 369 SGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVT 548
                + ++ + +M D  +  + I +N++I  + KE ++ E+  L  +M    V+P+ +T
Sbjct: 454 CNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVIT 513

Query: 549 YNMIINGFSVHGNMQEA 599
           YN +ING+ + G M EA
Sbjct: 514 YNTLINGYCLAGKMDEA 530



 Score =  115 bits (289), Expect = 7e-26
 Identities = 57/192 (29%), Positives = 110/192 (57%)
 Frame = +3

Query: 24   FTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANELWDDMH 203
            F ++I  +C+EG + ++ +LFE M+   + P+++TYNTLI+G C  G + +A +L   M 
Sbjct: 479  FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538

Query: 204  SQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVL 383
            S  + PN +TYS LI+ +C+  +++DA     EM + G+ P+I+TYN I++G  ++    
Sbjct: 539  SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598

Query: 384  KGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMII 563
              ++   ++ ++    +L TYN ++HG  K +   +A  +   +    ++ +  T+N++I
Sbjct: 599  AAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMI 658

Query: 564  NGFSVHGNMQEA 599
            +     G   EA
Sbjct: 659  DALLKVGRNDEA 670



 Score =  115 bits (288), Expect = 1e-25
 Identities = 56/200 (28%), Positives = 102/200 (51%)
 Frame = +3

Query: 3   VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKAN 182
           V P   T+ +++HGYC  G  ++A+   + M  + + PD+VTY+ L+D +C+ G   +A 
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 183 ELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGY 362
           +++D M  + + P   TY  L+  +  KG + +  G LD M+  GI P+   ++ +I  Y
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381

Query: 363 CRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDT 542
            + G V +      KMR   + P+ +TY  +I    K  ++ +A      M +E + P  
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 543 VTYNMIINGFSVHGNMQEAD 602
           + YN +I+G       + A+
Sbjct: 442 IVYNSLIHGLCTCNKWERAE 461



 Score =  114 bits (286), Expect = 2e-25
 Identities = 56/197 (28%), Positives = 105/197 (53%)
 Frame = +3

Query: 9   PXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANEL 188
           P + T+ ++I   C+   ++KA+++  TM+   + PD +TYN+++ G C  G   +A   
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 189 WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCR 368
              M S  + P+ +TYS+L+D  C+ G+  +A    D M  +G+ P I TY ++++GY  
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348

Query: 369 SGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVT 548
            G +++    L  M    + PD   ++ LI  Y K+ K+ +A  + + M  + + P+ VT
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408

Query: 549 YNMIINGFSVHGNMQEA 599
           Y  +I      G +++A
Sbjct: 409 YGAVIGILCKSGRVEDA 425



 Score =  113 bits (283), Expect = 4e-25
 Identities = 57/187 (30%), Positives = 104/187 (55%)
 Frame = +3

Query: 9   PXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANEL 188
           P    + +LIHG C     E+A +L   ML   +  + + +N++ID  C++G + ++ +L
Sbjct: 439 PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 498

Query: 189 WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCR 368
           ++ M    + PN ITY+ LI+ +C  G++D+A   L  M++ G+ PN +TY+++I GYC+
Sbjct: 499 FELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCK 558

Query: 369 SGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVT 548
              +       ++M  + V PD+ITYN ++ G  +  +   A  L   +     Q +  T
Sbjct: 559 ISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 618

Query: 549 YNMIING 569
           YN+I++G
Sbjct: 619 YNIILHG 625



 Score =  105 bits (263), Expect = 8e-23
 Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 4/203 (1%)
 Frame = +3

Query: 3   VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKAN 182
           V P LCT+  LI   CR G ++        ++ +    D + +  L+ G+C       A 
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 183 EL-WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINK---GIVPNIMTYNSI 350
           ++    M      PN  +Y+IL+   C++ +  +A   L  M +    G  P++++Y ++
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 351 IKGYCRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKV 530
           I G+ + G+  K      +M D  +LPD++TYN++I    K + M +A  +LN M    V
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262

Query: 531 QPDTVTYNMIINGFSVHGNMQEA 599
            PD +TYN I++G+   G  +EA
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEA 285



 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 55/200 (27%), Positives = 98/200 (49%)
 Frame = +3

Query: 3    VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKAN 182
            V P + T+ TLI+GYC  G +++A++L   M+   L P+ VTY+TLI+G C+   +  A 
Sbjct: 507  VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566

Query: 183  ELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGY 362
             L+ +M S  + P+ ITY+I++    +  +   A      +   G    + TYN I+ G 
Sbjct: 567  VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 363  CRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDT 542
            C++       Q  Q +    +  +  T+N +I   +K  +  EA +L     +  + P+ 
Sbjct: 627  CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNY 686

Query: 543  VTYNMIINGFSVHGNMQEAD 602
             TY ++       G ++E D
Sbjct: 687  WTYRLMAENIIGQGLLEELD 706



 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
 Frame = +3

Query: 204 SQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVL 383
           + E+ P+  TY ILI   C  G++D  F  L  +I KG   + + +  ++KG C      
Sbjct: 80  ADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTS 139

Query: 384 KGQQF-LQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEK---VQPDTVTY 551
                 L++M +   +P++ +YN L+ G   E +  EA  LL+MM +++     PD V+Y
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 552 NMIINGFSVHGNMQEA 599
             +INGF   G+  +A
Sbjct: 200 TTVINGFFKEGDSDKA 215



 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 47/197 (23%), Positives = 84/197 (42%)
 Frame = +3

Query: 9    PXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANEL 188
            P   T++TLI+GYC+   +E AL LF+ M    ++PDI+TYN ++ G+ +      A EL
Sbjct: 544  PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 603

Query: 189  WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCR 368
            +  +          TY+I++   C+    DDA      +    +     T+N +I    +
Sbjct: 604  YVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLK 663

Query: 369  SGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVT 548
             G   + +          ++P+  TY  +    + +  + E   L   ME+     D+  
Sbjct: 664  VGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGM 723

Query: 549  YNMIINGFSVHGNMQEA 599
             N I+      G +  A
Sbjct: 724  LNFIVRELLQRGEITRA 740

>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 36/235 (15%)
 Frame = +3

Query: 3   VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDG----------- 149
           V P + T+ TLI GYCR   IE+A  +   M    + PD+ TYN+LI G           
Sbjct: 44  VDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVL 103

Query: 150 ---------------------MCRQGDLGKANE----LWDDMHSQEIFPNHITYSILIDS 254
                                MC    LGK  E    L+ D+    + P   TY++L+D+
Sbjct: 104 YLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDA 163

Query: 255 HCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQFLQKMRDAKVLPD 434
            C+ G +D+A     EM ++   P +MTYN +I G C+S  V   +  L +++ +   P+
Sbjct: 164 LCKCGYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPN 222

Query: 435 LITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMIINGFSVHGNMQEA 599
            +TY T++  Y K  ++     L   M+ E    D   Y  +++     G  +EA
Sbjct: 223 AVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEA 277



 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 48/194 (24%), Positives = 101/194 (52%)
 Frame = +3

Query: 21  TFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANELWDDM 200
           T+  L+   C+ G I+ AL+LF+ M   R  P+++TYN LI+G+C+   +G A  +  ++
Sbjct: 156 TYNVLLDALCKCGYIDNALELFKEM-QSRFKPELMTYNILINGLCKSRRVGTAKWMLTEL 214

Query: 201 HSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNV 380
                 PN +TY+ ++  + +  ++        EM  +G   +   Y +++    ++G  
Sbjct: 215 KKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRT 274

Query: 381 LKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMI 560
            +  +++Q++       D+++YNTL++ Y K+  +    +LL  +E   ++ D  T+ +I
Sbjct: 275 KEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTII 334

Query: 561 INGFSVHGNMQEAD 602
           +NG    G  + A+
Sbjct: 335 VNGLLRTGQTRRAE 348



 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 1/179 (0%)
 Frame = +3

Query: 36  IHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANELWDDMHSQEI 215
           +   C+   +EKA  L    +   + PD+VTYNTLI G CR   + +A  +   M    I
Sbjct: 20  VDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGI 79

Query: 216 FPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQ 395
            P+  TY+ LI     +  +D      DEM+  GI P++ +YN+++  Y + G   +  +
Sbjct: 80  RPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFR 139

Query: 396 FLQK-MRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMIING 569
            L K ++ A + P   TYN L+    K   +  A  L   M++ + +P+ +TYN++ING
Sbjct: 140 VLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQS-RFKPELMTYNILING 197



 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
 Frame = +3

Query: 132 NTLIDGMCRQGDLGKANELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMIN 311
           N  +D +C+   L KA  L  D     + P+ +TY+ LI  +C    +++A+     M +
Sbjct: 17  NICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRD 76

Query: 312 KGIVPNIMTYNSIIKGYCRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHE 491
            GI P++ TYNS+I G  R   +        +M +  + PDL +YNTL+  Y K  K  E
Sbjct: 77  AGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEE 136

Query: 492 AFNLL-NMMENEKVQPDTVTYNMIINGFSVHGNMQEA 599
           AF +L   ++   + P   TYN++++     G +  A
Sbjct: 137 AFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNA 173



 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 42/192 (21%), Positives = 94/192 (48%)
 Frame = +3

Query: 24  FTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANELWDDMH 203
           +  ++    + G  ++A +  + ++ +    DIV+YNTL++   + G+L   ++L  ++ 
Sbjct: 261 YFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIE 320

Query: 204 SQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVL 383
            + +  +  T++I+++     GQ   A      M   GI  N++T N ++ G C++G+V 
Sbjct: 321 RRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVD 380

Query: 384 KGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMII 563
           +  ++ + M     + D  TY +++H   K+ +   A  LL    N+ ++  T     ++
Sbjct: 381 RAMRYFESME----VKDEYTYTSVVHNLCKDMRFVCASKLLLSCYNKGIKIPTSARRAVL 436

Query: 564 NGFSVHGNMQEA 599
           +G  + G   EA
Sbjct: 437 SGLRMSGCYGEA 448



 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 40/197 (20%), Positives = 93/197 (47%)
 Frame = +3

Query: 9   PXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANEL 188
           P L T+  LI+G C+   +  A  +   +     TP+ VTY T++    +   + +  +L
Sbjct: 186 PELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQL 245

Query: 189 WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCR 368
           + +M  +    +   Y  ++ +  + G+  +A+ ++ E++ KG   +I++YN+++  Y +
Sbjct: 246 FLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFK 305

Query: 369 SGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVT 548
            GN+      L ++    +  D  T+  +++G ++  +   A      M    +  + VT
Sbjct: 306 DGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVT 365

Query: 549 YNMIINGFSVHGNMQEA 599
            N +++G    G++  A
Sbjct: 366 CNCLVDGLCKAGHVDRA 382



 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 43/186 (23%), Positives = 85/186 (45%)
 Frame = +3

Query: 9   PXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANEL 188
           P   T+TT++  Y +   I + LQLF  M  E  T D   Y  ++  + + G   +A E 
Sbjct: 221 PNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEY 280

Query: 189 WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCR 368
             ++  +    + ++Y+ L++ + + G +D     L E+  +G+  +  T+  I+ G  R
Sbjct: 281 MQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLR 340

Query: 369 SGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVT 548
           +G   + ++    M +  +  +L+T N L+ G  K   +  A      ME +    D  T
Sbjct: 341 TGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVK----DEYT 396

Query: 549 YNMIIN 566
           Y  +++
Sbjct: 397 YTSVVH 402

>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)|
           (Leucine-rich PPR motif-containing protein)
          Length = 1273

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 43/177 (24%), Positives = 76/177 (42%)
 Frame = +3

Query: 54  EGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANELWDDMHSQEIFPNHIT 233
           E   E A ++++T+       D+  YN L+    +        +    M    I PN +T
Sbjct: 19  EERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVT 78

Query: 234 YSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQFLQKMR 413
           Y  LI S+C  G ++ A   L  M  K +      +++++ G+ R+G++   +  L  MR
Sbjct: 79  YQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMR 138

Query: 414 DAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMIINGFSVHG 584
           DA + P   TY  L++ Y ++  +      L  +E  ++         II  FS  G
Sbjct: 139 DAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKAG 195



 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 31/138 (22%), Positives = 63/138 (45%)
 Frame = +3

Query: 177 ANELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIK 356
           A+ +WD +       +   Y+ L+  + +         FL +M    I PN +TY  +I 
Sbjct: 25  AHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIA 84

Query: 357 GYCRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQP 536
            YC  G++    + L  M+   +      ++ L+ G+ +   M  A N+L +M +  ++P
Sbjct: 85  SYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEP 144

Query: 537 DTVTYNMIINGFSVHGNM 590
              TY  ++N ++  G++
Sbjct: 145 GPDTYLALLNAYAEKGDI 162



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
 Frame = +3

Query: 3   VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKAN 182
           + P   T+  LI  YC  G+IE A ++   M  + L      ++ L+ G  R GD+  A 
Sbjct: 72  IQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAE 131

Query: 183 ELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGY 362
            +   M    I P   TY  L++++ EKG +D     L+++    +         II  +
Sbjct: 132 NILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSF 191

Query: 363 CRSGNVLKGQQFLQKMR-DAKVLPDLITYNTLI 458
            ++G +   Q+F +K   + + +PD +    L+
Sbjct: 192 SKAGYLSMSQKFWKKFTCERRYIPDAMNLILLL 224



 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 25/102 (24%), Positives = 50/102 (49%)
 Frame = +3

Query: 297 DEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKE 476
           D +   G V ++  YN+++K Y ++        FL KM +A + P+ +TY  LI  Y   
Sbjct: 30  DTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNV 89

Query: 477 EKMHEAFNLLNMMENEKVQPDTVTYNMIINGFSVHGNMQEAD 602
             +  A  +L  M+ + +      ++ ++ G +  G+M+ A+
Sbjct: 90  GDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAE 131

>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 8/179 (4%)
 Frame = +3

Query: 51  REGNIEKALQLFETML--HERLTPDIVTYNTLIDGMCRQGDLGKANELWDDMHSQEIFPN 224
           +EG + +AL LFE  +   ERL P    Y  LI G  R G L KA  L++DM  +++ P+
Sbjct: 146 KEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPS 205

Query: 225 HITYSILI----DSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQ 392
             TY+ L     +S  +   +  A     ++  +    N+ TY++++K   +  ++    
Sbjct: 206 DATYTALFNVCAESPWKDSALQSALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCL 265

Query: 393 QFLQKMRDAKVLPDLITYNTLIHGYVKEEK--MHEAFNLLNMMENEKVQPDTVTYNMII 563
              +++          T+  L+ G ++++K    +A  +   M +  ++P    YN+++
Sbjct: 266 DVFKEIIQRGHAVTEETFCFLLVGCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLL 324



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 39/156 (25%), Positives = 71/156 (45%)
 Frame = +3

Query: 93  MLHERLTPDIVTYNTLIDGMCRQGDLGKANELWDDMHSQEIFPNHITYSILIDSHCEKGQ 272
           M    L PDI T  TL+  +   G   +++ L   +    +  +   ++ LI    + G 
Sbjct: 476 MTEHGLQPDIKTL-TLLAEVVEPGSAAESS-LLSVLDRHRVEADVTFFNTLIRKKSKLGD 533

Query: 273 VDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQFLQKMRDAKVLPDLITYNT 452
           ++ A   L  +  KGIVPN+ T+ ++  G  R  +   G Q L  M+ ++V P++  Y+T
Sbjct: 534 LEGAKALLPILAKKGIVPNLRTFCNLAIGCHRPRD---GMQLLADMKKSQVSPNIHIYST 590

Query: 453 LIHGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMI 560
           LI+  +K+       ++L  M    V  + V    +
Sbjct: 591 LINAALKKLDYTYLISILKDMRQNSVPVNEVVVRQL 626



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 6/156 (3%)
 Frame = +3

Query: 9   PXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTY----NTLIDGMCRQGDLGK 176
           P  C +T LI G  R G ++KA +LF  M    L P   TY    N   +   +   L  
Sbjct: 169 PLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQS 228

Query: 177 ANELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIK 356
           A +L   + ++    N  TY  L+    +   +        E+I +G      T+  ++ 
Sbjct: 229 ALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLV 288

Query: 357 GYC--RSGNVLKGQQFLQKMRDAKVLPDLITYNTLI 458
           G    +     +  Q  ++M    + P    YN L+
Sbjct: 289 GCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLL 324

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
 Frame = +3

Query: 177  ANELWDDMHSQEIFPNHITYSILIDSHCEKGQVDD---AFGFLDEMINKGIVPNIMTYNS 347
            +N   D+M      P   T++ LI++   +G  DD   A    +E     + P++  YN+
Sbjct: 872  SNLFCDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNA 931

Query: 348  IIKGYCRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENE- 524
            ++    R+    +  +  Q+M+++ +LP  +TY T+I+   +      A  L   MEN+ 
Sbjct: 932  VLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQP 991

Query: 525  KVQPDTVTYNMII 563
              QP    YN +I
Sbjct: 992  NYQPRVAPYNTMI 1004



 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
 Frame = +3

Query: 9    PXLCTFTTLIHGYCREGNIEKA---LQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKA 179
            P   TF  LI+   R G+ + A   L +FE      + P +  YN ++  + R     + 
Sbjct: 886  PRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTEC 945

Query: 180  NELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINK-GIVPNIMTYNSIIK 356
             +L+ +M    + P  +TY  +I++ C  G    A     EM N+    P +  YN++I+
Sbjct: 946  WKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQ 1005

Query: 357  GYCRS-GNVLKGQQFLQKMRDAKVLPDLITYNTLI--HGYVKEEKMHEAFNLLNMMENEK 527
               ++  N  K   +  ++    + P   TY  L+  +G +K   +     +L +ME   
Sbjct: 1006 FEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDAYGTLKPVNVGSVKAVLELMERTD 1065

Query: 528  V 530
            V
Sbjct: 1066 V 1066



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
 Frame = +3

Query: 3    VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKAN 182
            V P +  +  ++    R     +  +LF+ M    L P  VTY T+I+  CR GD   A 
Sbjct: 922  VKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAE 981

Query: 183  ELWDDMHSQEIF-PNHITYSILIDSHCE-KGQVDDAFGFLDEMINKGIVPNIMTYNSIIK 356
            +L+ +M +Q  + P    Y+ +I    +     + A  + + +    I P+  TY  ++ 
Sbjct: 982  KLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMD 1041

Query: 357  GY 362
             Y
Sbjct: 1042 AY 1043



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = +3

Query: 291  FLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQFLQKMRDAK---VLPDLITYNTLIH 461
            F D M   G +P   T+  +I    R G+       L    + K   V P +  YN ++ 
Sbjct: 875  FCDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLS 934

Query: 462  GYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMIIN 566
               +  +  E + L   M+   + P +VTY  +IN
Sbjct: 935  KLGRARRTTECWKLFQEMKESGLLPTSVTYGTVIN 969



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 12/178 (6%)
 Frame = +3

Query: 60  NIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQG--------DLGKANELWDDMHSQEI 215
           NI+K ++++  ML+  ++P++ T+ T+I  +CR+          L K         ++EI
Sbjct: 237 NIQKIIKVYVDMLNSFISPNVTTFETVIFALCRRAKFVHQKIESLSKRTIYAHPSIAKEI 296

Query: 216 FPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQ 395
            P       L+D   E       F F   +IN  ++ +   Y  +I+     G   +   
Sbjct: 297 QPE------LLDLQSEMPLQTAVFMFTSSLINHDLIYSPQFYAILIESVSLYGTQSQLDS 350

Query: 396 FLQKMR----DAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNM 557
            L+ +     +A   PDL+    LI    + ++++  F LL          DT   N+
Sbjct: 351 LLECVPLGTIEANGHPDLLP--ALIRALGRAKRLNSCFQLLERYNLSDPTSDTSMTNV 406

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 42/186 (22%), Positives = 81/186 (43%)
 Frame = +3

Query: 3   VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKAN 182
           VPP + +F T+     R   +         M   R  PDI T  TL+  +   G   ++ 
Sbjct: 446 VPPTVVSFGTVTTPADRLALVGGLEGFLSKMAEHRQQPDIRTL-TLLAEVVESGSPAESL 504

Query: 183 ELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGY 362
            L   +   ++  +   ++ L+    + G ++ A   L  +  +G+VPN+ T+ ++  G 
Sbjct: 505 -LLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGC 563

Query: 363 CRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDT 542
            R  +   G Q L  M+ ++V P+   Y+ LI+  V++       N+L  M+  +V  + 
Sbjct: 564 HRPKD---GLQLLTDMKKSQVTPNSHIYSALINAAVRKLNYTYLINILKDMKQNRVPVNE 620

Query: 543 VTYNMI 560
           V    +
Sbjct: 621 VVIRQL 626

>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1|
          Length = 700

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 41/186 (22%), Positives = 81/186 (43%)
 Frame = +3

Query: 3   VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKAN 182
           VPP + +F T+     R   I         M   R  PDI T  TL+  +   G   ++ 
Sbjct: 448 VPPTVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTL-TLLAEVVESGSPAESL 506

Query: 183 ELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGY 362
            L   +   ++  +   ++ L+    + G ++ A   L  +  +G+VPN+ T+ ++  G 
Sbjct: 507 -LLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGC 565

Query: 363 CRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDT 542
            R  +   G Q L  M+ ++V P+   Y+ LI+  +++       ++L  M+  +V  + 
Sbjct: 566 HRPKD---GLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNE 622

Query: 543 VTYNMI 560
           V    +
Sbjct: 623 VVIRQL 628



 Score = 35.0 bits (79), Expect = 0.17
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 402 QKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMIIN 566
           Q +++ ++ P    Y  LI G  +   + +AFNL N M+   ++P   TY  + N
Sbjct: 162 QMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFN 216



 Score = 30.8 bits (68), Expect = 3.2
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
 Frame = +3

Query: 114 PDIVTYNTLIDGMCRQGDLGKANELWDDMHSQEIFPNHITYSILIDSHCEKGQVDDAF-- 287
           P +V++ T+     R   +G        M      P+  T ++L +   E G   ++   
Sbjct: 450 PTVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEV-VESGSPAESLLL 508

Query: 288 GFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGY 467
             LDE     +  ++  +N++++   + G++   +  L  +    ++P+L T+  L  G 
Sbjct: 509 ALLDE---HQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGC 565

Query: 468 VKEEKMHEAFNLLNMMENEKVQPDTVTYNMIIN 566
            + +   +   LL  M+  +V P+T  Y+ +IN
Sbjct: 566 HRPK---DGLQLLTDMKKSQVTPNTHIYSALIN 595

>YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR1 intergenic|
           region
          Length = 864

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
 Frame = +3

Query: 198 MHSQEIFPNHI---TYSILIDSHCEKGQVD-DAFGFLDEMINK-----GIVPNIMTYNSI 350
           ++ +E FP+ +   T +IL  ++C K      +F  +D  I K     GI PN     ++
Sbjct: 269 INKKEGFPSKVPKMTQAIL--NNCLKYSTKCSSFHDMDYFITKFRDDYGITPNKQNLTTV 326

Query: 351 IKGYCRSGNVLKGQQFLQKMR--DAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENE 524
           I+ Y R     +       M+    K  PD+ TYNT++    KE    +A +L   +++ 
Sbjct: 327 IQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERNFPKALDLFQEIQDH 386

Query: 525 KVQPDTVTYNMI 560
            ++P T TY M+
Sbjct: 387 NIKPTTNTYIMM 398



 Score = 32.3 bits (72), Expect = 1.1
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 19/170 (11%)
 Frame = +3

Query: 9   PXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQG-----DLG 173
           P +CT+ T++    +E N  KAL LF+ +    + P   TY  +   +           G
Sbjct: 355 PDICTYNTMLRICEKERNFPKALDLFQEIQDHNIKPTTNTYIMMARVLASSSSNAVVSEG 414

Query: 174 KANEL----WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNI--- 332
           K++ L    W  +H  E            D +  + + DD   FL  M       +I   
Sbjct: 415 KSDSLRLLGWKYLHELE------------DKNLYRHKKDDLNLFLAMMALAAFDGDIELS 462

Query: 333 --MTYNSIIKGY---CRS--GNVLKGQQFLQKMRDAKVLPDLITYNTLIH 461
             + Y  I K Y   C +  GN+L  Q  + K   + ++P+++ Y  L +
Sbjct: 463 RALYYLFIAKKYKTLCANWKGNILVDQDTIWK---STLMPEMLNYLMLAY 509

>AEP3_KLULA (Q6CIF3) ATPase expression protein 3|
          Length = 593

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
 Frame = +3

Query: 300 EMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQ-------FLQKMRDAKVLPDLITYNTLI 458
           +M ++GI PN+ TYN +++   R+  ++K Q        +L++M+   +  D+IT+NT  
Sbjct: 238 QMKSEGIAPNVQTYNLMLRNLLRNSRLIKQQLPYREAIFYLERMKKENISADVITWNTCY 297

Query: 459 HGYVKEEKMHEAFNLLNMME 518
             ++ ++ +  A  L  M+E
Sbjct: 298 --FLLKDNISRAIFLEKMVE 315

>PP4C_ASHGO (Q74ZR2) Serine/threonine-protein phosphatase 4 catalytic subunit|
           (EC 3.1.3.16) (PP4C)
          Length = 310

 Score = 35.8 bits (81), Expect = 0.098
 Identities = 27/92 (29%), Positives = 43/92 (46%)
 Frame = +3

Query: 216 FPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQ 395
           +P+ IT   LI  + E  Q+   +GF DE+I K    N+  Y   +  Y   G ++ GQ 
Sbjct: 103 YPDRIT---LIRGNHETRQITKVYGFYDEVIRKYGNSNVWRYCCEVFDYLSLGAIINGQI 159

Query: 396 FLQKMRDAKVLPDLITYNTLIHGYVKEEKMHE 491
           F        + PD++T + +     K+E  HE
Sbjct: 160 FCV---HGGLSPDVMTVDEIRSIDRKQEVPHE 188

>AEP3_CANGA (Q6FKT1) ATPase expression protein 3|
          Length = 623

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = +3

Query: 327 NIMTYNSIIKGYCRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVKEEKMHE----- 491
           ++  YN I+  Y +  +    ++   +M+     P+  TYN L+   VK+  M +     
Sbjct: 217 SVQCYNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIK 276

Query: 492 ---AFNLLNMMENEKVQPDTVTYNMIIN 566
               F L NM +N  +  DTVT+N   N
Sbjct: 277 NELLFYLRNMQKN-GIFCDTVTWNTCYN 303



 Score = 30.8 bits (68), Expect = 3.2
 Identities = 36/205 (17%), Positives = 88/205 (42%), Gaps = 16/205 (7%)
 Frame = +3

Query: 24  FTTLIHGYCREGNIEKALQLFETMLHERLTPDIVTYNTLIDGMCRQGDLGKANELWDD-- 197
           +  +++ Y ++ +     +LF  M  E   P+  TYN L+  + ++  + K   + ++  
Sbjct: 221 YNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIKNELL 280

Query: 198 -----MHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGY 362
                M    IF + +T++   +   ++   D    +++++I+ G+        S+++  
Sbjct: 281 FYLRNMQKNGIFCDTVTWNTCYNFLNDEMSRD---LYIEKLIDCGVPLTSELVYSVVRNS 337

Query: 363 CRSGNVLKGQQFLQKM-RDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKV--- 530
            ++    K +  L     D +   +L   N LI   V +  +  A+++L   E +++   
Sbjct: 338 SKAHISTKTKYILDMFGEDGESFVNLKFVNLLISDLVLDHNVERAWSVLRYFELKQLKFV 397

Query: 531 -QP----DTVTYNMIINGFSVHGNM 590
            QP    ++ T N  +  F+  G +
Sbjct: 398 NQPKFLINSETMNTFLRYFAEQGRI 422

>FA35A_MOUSE (Q3UEN2) Protein FAM35A|
          Length = 898

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 423 VLPDLITYNTLIHGYVKE--EKMHEAFNLLNMMENEKVQPDTVTYNMI 560
           +L DL+TY +  H Y+K+  ++  +  N +  +E E++QPD + + ++
Sbjct: 527 ILQDLLTYVSTKHSYLKDLPQRQPQKMNTVEFVELEQLQPDILVHAVL 574

>AEP3_YEAST (Q12089) ATPase expression protein 3|
          Length = 606

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
 Frame = +3

Query: 300 EMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQ-------FLQKMRDAKVLPDLITYNTLI 458
           +M  +G  PN +T+N +++   ++ ++ K +        +L+ MR+  V  D+IT+ T  
Sbjct: 246 QMKAEGTKPNTITFNLLLRNVVKNSHIRKTKHPDDEVLFYLRSMRNHGVFADVITWTT-C 304

Query: 459 HGYVKEEKMHEAFNLLNMMENEKVQPDTVTYNMIING 569
           + ++++E   + + ++ M E+         Y ++ NG
Sbjct: 305 YNFLRDEVSRQLY-IVQMGEHLGNFNVNFVYTVLRNG 340



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = +3

Query: 129 YNTLIDGMCRQGDLGKANELWDDMHSQEIFPNHITYSILI-----DSHCEKGQ--VDDAF 287
           YN  I       D     E++  M ++   PN IT+++L+     +SH  K +   D+  
Sbjct: 224 YNDSIYFFSEHFDFASCREIFAQMKAEGTKPNTITFNLLLRNVVKNSHIRKTKHPDDEVL 283

Query: 288 GFLDEMINKGIVPNIMTYNS 347
            +L  M N G+  +++T+ +
Sbjct: 284 FYLRSMRNHGVFADVITWTT 303

>PP4C_CANGA (Q6FM81) Serine/threonine-protein phosphatase 4 catalytic subunit|
           (EC 3.1.3.16) (PP4C)
          Length = 309

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 27/109 (24%), Positives = 49/109 (44%)
 Frame = +3

Query: 216 FPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQ 395
           +P+ IT   LI  + E  Q+   +GF DE++ K    N+  Y   +  Y   G ++    
Sbjct: 102 YPDRIT---LIRGNHETRQITKVYGFYDEVMRKYGNSNVWRYCCEVFDYLSLGAIINDSI 158

Query: 396 FLQKMRDAKVLPDLITYNTLIHGYVKEEKMHEAFNLLNMMENEKVQPDT 542
           F        + PD+ T N +     K+E  HE   + +++ ++  + DT
Sbjct: 159 FCV---HGGLSPDITTLNEIRAIDRKQEVPHEG-GMCDLLWSDPDEVDT 203

>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
 Frame = +3

Query: 267 GQVDDAFGFLDEMINKGIVPNIMT---YNSIIKGYCRSGNVLKGQQFLQKMRDAKVLPDL 437
           GQV  A   L    N G    ++T   YN+++ G+ R G+  +       ++DA + PDL
Sbjct: 209 GQVPLAHHVLVTHHNNGDRQQVLTLHMYNTVMLGWARKGSFRELVYVFLMLKDAGLSPDL 268

Query: 438 ITYNTLIHGY-VKEEKMHEAFNLLNMMENEKVQPDTVTYNMII 563
            +Y   +     +++ +      L  M  E  QP  +  ++++
Sbjct: 269 CSYAAALQCMGRRDQDVRTIQRCLKQMMEEGFQPQLLFTDLVL 311

>POLB_MAIZE (P15718) Putative Pol polyprotein from transposon element Bs1 (ORF|
           1)
          Length = 740

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 228 ITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQFLQK 407
           + +++L+ +    G+  DA+  L+EM N G  P++ TY            VLK  Q+ ++
Sbjct: 471 VAHNLLVQALFMDGRASDAYVVLEEMQNNGPFPDVFTYTL---------KVLKNGQWAEE 521

Query: 408 MRDAKVLPDLI 440
                V  D+I
Sbjct: 522 ESTILVPGDII 532



 Score = 29.6 bits (65), Expect = 7.0
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
 Frame = +3

Query: 210 EIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKG---------IVPNIMTYNSIIKGY 362
           + F  H  +++  +       V+DA    D+M+ KG         +V   + +N +++  
Sbjct: 422 DFFTKHFDWAVF-EKEFRWYHVEDAAKVFDKMLTKGEEAPSVQRGVVMTAVAHNLLVQAL 480

Query: 363 CRSGNVLKGQQFLQKMRDAKVLPDLITY--NTLIHGYVKEEK 482
              G        L++M++    PD+ TY    L +G   EE+
Sbjct: 481 FMDGRASDAYVVLEEMQNNGPFPDVFTYTLKVLKNGQWAEEE 522

>C6A14_DROME (Q9V4U7) Probable cytochrome P450 6a14 (EC 1.14.-.-) (CYPVIA14)|
          Length = 509

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 449 VVSN*IRQHLGIPHLLQKLLSLQYISRPAVTLNDGIIG----HDVWHNPLVY 306
           V+S  +R+H  +PHL+++      I    + L+ GI+     H++ H+P +Y
Sbjct: 369 VLSETLRKHPLLPHLIRETTKDYQIPNSDIVLDKGILALIPVHNIHHDPEIY 420

>PP4C_YEAST (P32345) Serine/threonine-protein phosphatase 4 catalytic subunit|
           (EC 3.1.3.16) (PP4C) (Phosphatase PP2A-like catalytic
           subunit PPH3)
          Length = 308

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 24/92 (26%), Positives = 40/92 (43%)
 Frame = +3

Query: 216 FPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQ 395
           +P+ IT   LI  + E  Q+   +GF DE++ K    N+  Y   +  Y   G ++    
Sbjct: 101 YPDRIT---LIRGNHETRQITKVYGFYDEVVRKYGNSNVWRYCCEVFDYLSLGAIINNSI 157

Query: 396 FLQKMRDAKVLPDLITYNTLIHGYVKEEKMHE 491
           F        + PD+ T + +     K+E  HE
Sbjct: 158 FCV---HGGLSPDMTTVDEIRTIDRKQEVPHE 186

>PP4C_KLULA (Q6CNT6) Serine/threonine-protein phosphatase 4 catalytic subunit|
           (EC 3.1.3.16) (PP4C)
          Length = 308

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 23/92 (25%), Positives = 42/92 (45%)
 Frame = +3

Query: 216 FPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPNIMTYNSIIKGYCRSGNVLKGQQ 395
           +P+ I   +LI  + E  Q+   +GF DE++ K    N+  Y   +  Y   G ++  + 
Sbjct: 101 YPDRI---VLIRGNHETRQITKVYGFYDEVVRKYGNSNVWRYCCEVFDYLPLGAIVNNKV 157

Query: 396 FLQKMRDAKVLPDLITYNTLIHGYVKEEKMHE 491
           F        + PD+++ N +     K+E  HE
Sbjct: 158 FCV---HGGLSPDVLSINEIRTIDRKKEVPHE 186

>GUN4_RUMAL (Q07940) Endoglucanase 4 (EC 3.2.1.4) (Endoglucanase IV)|
           (Endo-1,4-beta-glucanase) (Cellulase) (EG-IV)
          Length = 312

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +3

Query: 15  LCTFTTLIHGYCREGNIEKALQLFE--TMLHERLTPDIVTYNTLIDGMCRQGDLGKANEL 188
           +  +T    GYC++GN +   +L E   ++ E+L   ++    ++        + +A E 
Sbjct: 55  IAMYTDEFRGYCKDGNKQHLKELIEKGVVIAEKLDMYVIVDWHVLCDQDPMKYIDEAEEF 114

Query: 189 WDDMHSQEIFPNHITYSILIDSHCEKGQVDDAFGFLDEMI 308
           + DM  +     ++ Y I  + +C  G  D    + D +I
Sbjct: 115 FSDMSKRFANKTNVIYEICNEPNC-SGTWDKITEYADRII 153

>CH60_LEPIN (P61439) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat|
           shock 58 kDa protein)
          Length = 546

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
 Frame = +3

Query: 225 HITYSILIDSHCEKGQVDDAFGFLDEMINKGIVP----NIMTYNSIIKGYCRSGNVLKGQ 392
           H+  +  ++   +K +V+DA       + +GIVP     ++     +      G+   G 
Sbjct: 379 HVGAATEVEMKEKKARVEDALSATRAAVEEGIVPGGGLTLLKAQEAVGSLKLDGDEATGA 438

Query: 393 QFLQKMRDAKVLPDLITYNTLIHG-----YVKEEKMHEAFNLLNMMENEKVQPDTV 545
           + + +  +  +   +IT N  + G     + K +K +E FN L M+  + +Q   V
Sbjct: 439 KIIFRALEEPI--RMITSNAGLEGSVIVEHAKAKKGNEGFNALTMVWEDMIQAGVV 492

>CH60_LEPIC (P61438) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat|
           shock 58 kDa protein)
          Length = 546

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
 Frame = +3

Query: 225 HITYSILIDSHCEKGQVDDAFGFLDEMINKGIVP----NIMTYNSIIKGYCRSGNVLKGQ 392
           H+  +  ++   +K +V+DA       + +GIVP     ++     +      G+   G 
Sbjct: 379 HVGAATEVEMKEKKARVEDALSATRAAVEEGIVPGGGLTLLKAQEAVGSLKLDGDEATGA 438

Query: 393 QFLQKMRDAKVLPDLITYNTLIHG-----YVKEEKMHEAFNLLNMMENEKVQPDTV 545
           + + +  +  +   +IT N  + G     + K +K +E FN L M+  + +Q   V
Sbjct: 439 KIIFRALEEPI--RMITSNAGLEGSVIVEHAKAKKGNEGFNALTMVWEDMIQAGVV 492

>PT309_YEAST (P32522) Protein PET309, mitochondrial precursor|
          Length = 965

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 42/202 (20%), Positives = 86/202 (42%), Gaps = 8/202 (3%)
 Frame = +3

Query: 3    VPPXLCTFTTLIHGYCREGNIEKALQLFETMLHERLTPDIVT--YNTLIDGMCRQGDLGK 176
            + P   T T ++  Y    +++ A ++ +  L E  + +I    +  LI   C+  +   
Sbjct: 412  ITPSTATHTIMLKVYRGLNDLDGAFRILKR-LSEDPSVEITEGHFALLIQMCCKTTNHLI 470

Query: 177  ANELWDDMHSQ-EIFPNHITYSILIDSHCEKGQVDDAFGFLDEMINKGIVPN---IMTYN 344
            A EL++ M     I     + S L+D + E  +  +A   L E  +K +      I  YN
Sbjct: 471  AQELFNLMTEHYNIQHTGKSISALMDVYIESNRPTEAIA-LFEKHSKNLSWRDGLISVYN 529

Query: 345  SIIKGYCRSGNVLKGQQFLQKMRDAKVLPDLITYNTLIHGYVK-EEKMHEAFNLLN-MME 518
              IK Y    N  K ++   K+  +K+  +   Y  +I   V   E    A ++++ +++
Sbjct: 530  KAIKAYIGLRNANKCEELFDKITTSKLAVNSEFYKMMIKFLVTLNEDCETALSIIDQLIK 589

Query: 519  NEKVQPDTVTYNMIINGFSVHG 584
            +  ++ D   + +I+  +   G
Sbjct: 590  HSVIKVDATHFEIIMEAYDKEG 611

>ABGT_ECOLI (P46133) Aminobenzoyl-glutamate transport protein|
          Length = 510

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 560 NHIIRDSVWLNLFILHHVKQIKSFMHLLFFNITMD*GVVSN*IRQHLGIPHLL 402
           N I+RD +   +     +K I   + L FF +++  G+ +  IR+   +PHL+
Sbjct: 286 NGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRRQADLPHLM 338

>UBQL3_MOUSE (Q8C5U9) Ubiquilin-3|
          Length = 658

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 428 QHLGIPHLLQKLLSLQYISRPAVTLNDGIIGHDVWHNPLVYHFIQKPKCIIHL 270
           QH+ +P L+ +L+   +I    +  N G++   V  NP + H IQ+   I H+
Sbjct: 160 QHISVPELVAQLVDDPFIQ--GLLSNTGLVRQLVLDNPHMQHLIQQNPEIGHI 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,136,781
Number of Sequences: 219361
Number of extensions: 1986733
Number of successful extensions: 4740
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4695
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)