>PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1|
           (Pseudo-response regulator 1) (OsPRR1)
          Length = 518

 Score =  289 bits (740), Expect = 4e-78
 Identities = 135/200 (67%), Positives = 159/200 (79%)
 Frame = +2

Query: 20  DNASSPGGMFSRPIKTNLRIAESSAFLAYVKSSTPANSSLDTELQRGANKLDIVDHQVNF 199
           D ASSPG MFSRPIKTNLR+AESSAFLAYVKSSTP  SS D+ELQ+G N+LD  DH+ NF
Sbjct: 233 DQASSPGVMFSRPIKTNLRVAESSAFLAYVKSSTPTTSSFDSELQKGGNRLDSSDHRGNF 292

Query: 200 SGSTDRIDTNSSTNIQDEKAFEMPTQYPLVCFSSSNLQLEQRNEGQQDVSGNPPVYHYPF 379
           S +TDR DT +  NI+D++AFEMP QYP+VCFSSSNL LE+ NEGQ D SG PPVYH+PF
Sbjct: 293 SSTTDRSDTGTDVNIRDKEAFEMPVQYPVVCFSSSNLHLERSNEGQNDASGTPPVYHFPF 352

Query: 380 YYPGMVEHSMALHSVQSFQGNINTAQAHTPPTMLHQYSVYHQSHGASTMPSYQYNPAGMN 559
           YYPGM++H M    VQ+FQGNIN AQ HTP T+L QY+VY Q HG S MP +QYNPAGM+
Sbjct: 353 YYPGMMDHGMTHPPVQNFQGNINNAQVHTPQTLLPQYNVYPQCHGVSMMPPFQYNPAGMS 412

Query: 560 VHSSHLSMQNVWSSVSSTPI 619
           + S+ L  QN+W   SSTP+
Sbjct: 413 IQSNQLPTQNMWPQASSTPM 432

>APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1|
           (Pseudo-response regulator 1) (Timing of CAB expression
           1) (ABI3-interacting protein 1)
          Length = 618

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
 Frame = +2

Query: 29  SSPGGMFSRPIKTNLRIAESSAFLAYVKSSTPANSSLDTELQRGANKLDIVDHQVNFSGS 208
           S+P    S P K+ L+I ESSAF  YVKS+    +  D  L  G   L +        G 
Sbjct: 248 SNPAQFSSAPKKSRLKIGESSAFFTYVKSTVLRTNGQDPPLVDGNGSLHL------HRGL 301

Query: 209 TDRIDTNSSTNIQDEKAFEMPTQYPLVCFSSSNLQLEQRNEGQQDVSGNPPVYHYPFYYP 388
            ++    +S  I + K     T    V           R  GQ     +PP+ +      
Sbjct: 302 AEKFQVVASEGINNTKQARRATPKSTVL----------RTNGQ-----DPPLVN------ 340

Query: 389 GMVEHSMALHSVQSFQ-----GNINTAQAH 463
           G   H +   + + FQ     G  NT QAH
Sbjct: 341 GNGSHHLHRGAAEKFQVVASEGINNTKQAH 370

>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
            (ZAP113)
          Length = 1951

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
 Frame = +2

Query: 230  SSTNIQDEKAFEMPTQYPLVCFSSSNLQLEQRNEGQQDVSGNPPVYHYPFYYPGMVEHSM 409
            + T+   +K F+M +    +     +++  Q NE   D    PP         G VE S 
Sbjct: 672  ADTSSNQQKNFKMQSAAFSIAADVKDVKAAQSNENLSDSQQEPPKSEVS---EGPVEPSN 728

Query: 410  ALHSVQSFQGNINTAQAHTPPTMLHQYSVYHQSHGASTMPSYQYN-PAGMNVHSSHLSMQ 586
               +VQS +  I+ AQA T P  L    V  Q    ST PS       G  V +S L+  
Sbjct: 729  WDQNVQSMETQIDKAQAVTQPVPLANKPVPAQ----STFPSKTGGMEGGTAVATSSLTAD 784

Query: 587  NVWSSV 604
            N +  V
Sbjct: 785  NDFKPV 790

>NUPL1_HUMAN (Q9BVL2) Nucleoporin p58/p45 (Nucleoporin-like 1)|
          Length = 599

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 191 VNFSGSTDRIDTNSSTNIQDEKAFEMPTQYPLVCFSSSNLQ--LEQRNEGQQDVS 349
           ++FS S+D+    + T  +D KA +     P++C    NLQ  ++++ + Q+++S
Sbjct: 219 IDFSSSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEIS 273

>NUPL1_MOUSE (Q8R332) Nucleoporin p58/p45 (Nucleoporin-like 1)|
          Length = 587

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 191 VNFSGSTDRIDTNSSTNIQDEKAFEMPTQYPLVCFSSSNLQ--LEQRNEGQQDVS 349
           ++FS S+D+    + T  +D KA +     P++C    NLQ  ++++ + Q+++S
Sbjct: 207 IDFSTSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEIS 261

>NUPL1_RAT (P70581) Nucleoporin p58/p45 (Nucleoporin-like 1)|
          Length = 585

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 191 VNFSGSTDRIDTNSSTNIQDEKAFEMPTQYPLVCFSSSNLQ--LEQRNEGQQDVS 349
           ++FS S+D+    + T  +D KA +     P++C    NLQ  ++++ + Q+++S
Sbjct: 205 IDFSTSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEIS 259

>NCKP1_ORYSA (Q6ZBH9) Probable protein NAP1 (Nck-associated protein 1) (P125Nap1)|
            (NAP of plants)
          Length = 1359

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +2

Query: 446  NTAQAHTPPTMLHQYSVYHQSHGASTM------PSYQYNPAGMNVHSSHLSMQN 589
            +T + H P T+L   S+YHQ +GAS M      PS + +P     H+S    QN
Sbjct: 1221 STLEVHIPYTILR--SIYHQLYGASLMATEPMEPSPRQSPLISLAHASPSMKQN 1272

>EPHA2_HUMAN (P29317) Ephrin type-A receptor 2 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor ECK) (Epithelial cell
           kinase)
          Length = 976

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 22/79 (27%)
 Frame = -3

Query: 494 HC-IDGALLVVYELEQCLCFLG----------------NFELNEVPC-----YALPSLDN 381
           HC +DG  LV   + QCLC  G                 FE +E PC     + LPS + 
Sbjct: 246 HCAVDGEWLV--PIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEG 303

Query: 380 KMGNDIQEGFLKHLVDPHS 324
               + +EGF +   DP S
Sbjct: 304 ATSCECEEGFFRAPQDPAS 322

>MNB_DROME (P49657) Serine/threonine-protein kinase minibrain (EC 2.7.12.1)|
          Length = 908

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
 Frame = +2

Query: 389 GMVEHSMALHSVQSFQGNINTAQAHTPPTMLHQY-------SVYHQSHGASTMPSYQYNP 547
           G++ HS+A +++ +F      + AH PP++ + +       S+ H S G++   +   N 
Sbjct: 601 GLLMHSVAANAMNNFSALSLQSNAHPPPSLANSHHSTNSLGSLNHISPGSTGCHNNNSNS 660

Query: 548 AGMNVHSSHLSMQNVWSSV 604
           +  N   S L   N+ + V
Sbjct: 661 SNNNTRHSRLYGSNMVNMV 679

>GLI3_XENLA (Q91660) Zinc finger protein GLI3 (Neural-specific DNA-binding|
           protein xGLI3) (xGLI-3)
          Length = 1569

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +2

Query: 380 YYPGMVEHSMALHSVQSFQGNINTAQAHTPPTMLHQYSVYHQSHGASTMPSYQYNPAGMN 559
           Y P  V        + S Q +I +A  H+PP +LH    +        +PS   NP  ++
Sbjct: 353 YQPTPVSLQQMHQQIMSRQHSIGSAFGHSPP-LLHPAPTFPSQRTIPGIPSV-LNPVQVS 410

Query: 560 VHSSHLSMQN---VWSSVSST 613
           +  S  + QN     S+VSST
Sbjct: 411 IGPSEAAQQNKPTSESAVSST 431

>STK31_HUMAN (Q9BXU1) Serine/threonine-protein kinase 31 (EC 2.7.11.1)|
           (Serine/threonine-protein kinase NYD-SPK)
          Length = 1019

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 517 VYNAIVSVQSCWYECAFKSLVNAE-CVVIGIEHTN 618
           +Y  + S   CWY C    +++ E C+V  I++ N
Sbjct: 84  IYGGLFSEDQCWYRCKVLKIISVEKCLVRYIDYGN 118

>STK31_MOUSE (Q99MW1) Serine/threonine-protein kinase 31 (EC 2.7.11.1)|
          Length = 1018

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 508 PWCVYNAIVSVQSCWYEC-AFKSLVNAECVVIGIEHTN 618
           P  +Y  + S   CWY C   K++ + +C+V  I++ N
Sbjct: 81  PKKIYGGLFSEDKCWYRCKVLKTISDDKCLVRYIDYGN 118

>CSMD2_HUMAN (Q7Z408) CUB and sushi domain-containing protein 2 (CUB and sushi|
            multiple domains protein 2)
          Length = 3487

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 451  CSSSYTTNNAPSIQCLSPIPWCVYNAIVSVQSCWYEC 561
            C+S Y    +P I+CL P+P  +    VS  +C   C
Sbjct: 1761 CNSGYALQGSPEIECL-PVPGALAQWNVSAPTCVVPC 1796


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,865,999
Number of Sequences: 219361
Number of extensions: 1885616
Number of successful extensions: 4878
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4876
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)