Clone Information

BLAST Search Result

Clone Name	bags9h10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_466770.1\| Oryza sativa (japonica cultivar-group), mRNA	151	3e-33
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	151	3e-33
3	dbj\|AB189038.1\| Oryza sativa (japonica cultivar-group) OsPRR1 mR...	151	3e-33
4	dbj\|AP003980.3\| Oryza sativa (japonica cultivar-group) genomic D...	151	3e-33
5	dbj\|AP004083.2\| Oryza sativa (japonica cultivar-group) genomic D...	151	3e-33
6	dbj\|AK111828.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	151	3e-33
7	gb\|AC159998.6\| Mus musculus BAC clone RP24-576J22 from chromosom...	48	0.035
8	gb\|DP000008.1\| Bos taurus target 1 genomic scaffold	44	0.54
9	gb\|AC156365.3\| Bos taurus clone RP42-18L9, complete sequence	44	0.54
10	gb\|AC154492.2\| Mus musculus BAC clone RP24-107B10 from chromosom...	42	2.1
11	gb\|AY046568.1\| Gallus gallus cryptochrome 2 (Cry2) gene, partial...	42	2.1
12	gb\|AC134918.5\| Mus musculus BAC clone RP23-71G16 from 3, complet...	42	2.1
13	gb\|AC138720.5\| Mus musculus BAC clone RP23-192O12 from chromosom...	42	2.1
14	gb\|AC132303.3\| Mus musculus BAC clone RP24-281P9 from chromosome...	40	8.4
15	gb\|AC123695.10\| Mus musculus chromosome 15, clone RP23-328C23, c...	40	8.4
16	gb\|AC112271.4\| Mus musculus BAC clone RP24-121H20 from chromosom...	40	8.4
17	ref\|XM_661576.1\| Cryptosporidium hominis TU502 hypothetical prot...	40	8.4
18	emb\|BX927248.6\| Zebrafish DNA sequence from clone CH211-140C22 i...	40	8.4
19	emb\|AL590627.25\| Human DNA sequence from clone RP13-467E5 on chr...	40	8.4
20	emb\|AL359824.17\| Human DNA sequence from clone RP11-651K6 on chr...	40	8.4
21	emb\|AL162456.14\| Human DNA sequence from clone RP11-95C14 on chr...	40	8.4
22	emb\|CR848664.5\| Zebrafish DNA sequence from clone CH211-169I9 in...	40	8.4
23	emb\|CR381673.7\| Zebrafish DNA sequence from clone CH211-209J3 in...	40	8.4
24	dbj\|AK137399.1\| Mus musculus 16 days neonate cerebellum cDNA, RI...	40	8.4
25	gb\|AC109630.2\| Homo sapiens chromosome 15, clone RP11-624L4, com...	40	8.4
26	ref\|XM_628273.1\| Cryptosporidium parvum Iowa II hypothetical pro...	40	8.4
27	gb\|AC096683.2\| Gallus gallus clone WAG-68G2, complete sequence	40	8.4
28	dbj\|AK193980.1\| Mus musculus cDNA, clone:Y1G0113P04, strand:minu...	40	8.4
29	emb\|AL118556.4\|CNS01DRR Human chromosome 14 DNA sequence BAC R-4...	40	8.4
30	gb\|AC113471.9\| Mus musculus chromosome 7, clone RP23-268E17, com...	40	8.4
31	gb\|AC132356.3\| Mus musculus BAC clone RP24-119I6 from 1, complet...	40	8.4
32	emb\|AL808109.6\| Mouse DNA sequence from clone RP23-435P19 on chr...	40	8.4

>ref|XM_466770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2261

 Score =  151 bits (76), Expect = 3e-33
 Identities = 259/320 (80%)
 Strand = Plus / Plus

                                                                        
Query: 238  aaatattcaggatgaaaaagcttttgagatgcccacgcagtatcctttggtttgcttttc 297
            |||||||| |||| || |||| |||||||||||   ||| || ||| |||| ||||||||
Sbjct: 1347 aaatattcgggataaagaagcctttgagatgccagtgcaataccctgtggtatgcttttc 1406

                                                                        
Query: 298  ttcctctaacttgcaactggagcaaaggaatgagggtcaacaagatgtttcaggaaaccc 357
            ||||||||||||||| ||||||| ||| ||||| || ||| | |||| ||||||||  ||
Sbjct: 1407 ttcctctaacttgcatctggagcgaagcaatgaaggccaaaatgatgcttcaggaactcc 1466

                                                                        
Query: 358  tcctgtatatcattacccattttattatccagggatggtagagcatagcatggcacttca 417
            ||||||||||||||  || |||||||| ||||||||| | || ||  | ||| ||| || 
Sbjct: 1467 tcctgtatatcattttcccttttattacccagggatgatggaccacggtatgacacatcc 1526

                                                                        
Query: 418  ttcagttcaaagtttccaaggaaacataaacactgctcaagctcatacaccaccaacaat 477
            | | || |||| ||||||||| ||||||||||  |||||||  |||||||||| |||  |
Sbjct: 1527 tccggtgcaaaatttccaagggaacataaacaacgctcaagtgcatacaccacaaacgtt 1586

                                                                        
Query: 478  gctccatcaatacagtgtttatcaccaatcccatggtgcgtctacaatgccatcgtatca 537
            ||||| ||| || | |||||||| |||||  |||||||  ||||  |||||| | | |||
Sbjct: 1587 gctccctcagtataatgtttatccccaatgtcatggtgtatctatgatgccaccatttca 1646

                                
Query: 538  gtacaatcctgctggtatga 557
            ||| ||||||||||||||||
Sbjct: 1647 gtataatcctgctggtatga 1666



 Score =  107 bits (54), Expect = 4e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                        
Query: 29   tcatctccaggaggaatgttttcacgcccaataaagactaatttgaggatagctgagtca 88
            |||||||| |||| |||||||||||| |||||||||||||| |||||| | |||||||| 
Sbjct: 1138 tcatctcccggagtaatgttttcacgtccaataaagactaacttgagggttgctgagtct 1197

                                                              
Query: 89   tctgcatttctagcatatgttaaatcaagcactccagcaaacagctcatt 138
            ||||| |||||||| |||||||| |||||||| ||| | | |||||||||
Sbjct: 1198 tctgcttttctagcttatgttaagtcaagcaccccaactaccagctcatt 1247

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  151 bits (76), Expect = 3e-33
 Identities = 259/320 (80%)
 Strand = Plus / Plus

                                                                            
Query: 238      aaatattcaggatgaaaaagcttttgagatgcccacgcagtatcctttggtttgcttttc 297
                |||||||| |||| || |||| |||||||||||   ||| || ||| |||| ||||||||
Sbjct: 24590870 aaatattcgggataaagaagcctttgagatgccagtgcaataccctgtggtatgcttttc 24590929

                                                                            
Query: 298      ttcctctaacttgcaactggagcaaaggaatgagggtcaacaagatgtttcaggaaaccc 357
                ||||||||||||||| ||||||| ||| ||||| || ||| | |||| ||||||||  ||
Sbjct: 24590930 ttcctctaacttgcatctggagcgaagcaatgaaggccaaaatgatgcttcaggaactcc 24590989

                                                                            
Query: 358      tcctgtatatcattacccattttattatccagggatggtagagcatagcatggcacttca 417
                ||||||||||||||  || |||||||| ||||||||| | || ||  | ||| ||| || 
Sbjct: 24590990 tcctgtatatcattttcccttttattacccagggatgatggaccacggtatgacacatcc 24591049

                                                                            
Query: 418      ttcagttcaaagtttccaaggaaacataaacactgctcaagctcatacaccaccaacaat 477
                | | || |||| ||||||||| ||||||||||  |||||||  |||||||||| |||  |
Sbjct: 24591050 tccggtgcaaaatttccaagggaacataaacaacgctcaagtgcatacaccacaaacgtt 24591109

                                                                            
Query: 478      gctccatcaatacagtgtttatcaccaatcccatggtgcgtctacaatgccatcgtatca 537
                ||||| ||| || | |||||||| |||||  |||||||  ||||  |||||| | | |||
Sbjct: 24591110 gctccctcagtataatgtttatccccaatgtcatggtgtatctatgatgccaccatttca 24591169

                                    
Query: 538      gtacaatcctgctggtatga 557
                ||| ||||||||||||||||
Sbjct: 24591170 gtataatcctgctggtatga 24591189



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                            
Query: 30       catctccaggaggaatgttttcacgcccaataaagactaatttgaggatagctgagtcat 89
                ||||||| |||| |||||||||||| |||||||||||||| |||||| | |||||||| |
Sbjct: 24590662 catctcccggagtaatgttttcacgtccaataaagactaacttgagggttgctgagtctt 24590721

                                                                 
Query: 90       ctgcatttctagcatatgttaaatcaagcactccagcaaacagctcatt 138
                |||| |||||||| |||||||| |||||||| ||| | | |||||||||
Sbjct: 24590722 ctgcttttctagcttatgttaagtcaagcaccccaactaccagctcatt 24590770

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>dbj|AB189038.1| Oryza sativa (japonica cultivar-group) OsPRR1 mRNA for
            pseudo-response regulator 1, complete cds
          Length = 1557

 Score =  151 bits (76), Expect = 3e-33
 Identities = 259/320 (80%)
 Strand = Plus / Plus

                                                                        
Query: 238  aaatattcaggatgaaaaagcttttgagatgcccacgcagtatcctttggtttgcttttc 297
            |||||||| |||| || |||| |||||||||||   ||| || ||| |||| ||||||||
Sbjct: 915  aaatattcgggataaagaagcctttgagatgccagtgcaataccctgtggtatgcttttc 974

                                                                        
Query: 298  ttcctctaacttgcaactggagcaaaggaatgagggtcaacaagatgtttcaggaaaccc 357
            ||||||||||||||| ||||||| ||| ||||| || ||| | |||| ||||||||  ||
Sbjct: 975  ttcctctaacttgcatctggagcgaagcaatgaaggccaaaatgatgcttcaggaactcc 1034

                                                                        
Query: 358  tcctgtatatcattacccattttattatccagggatggtagagcatagcatggcacttca 417
            ||||||||||||||  || |||||||| ||||||||| | || ||  | ||| ||| || 
Sbjct: 1035 tcctgtatatcattttcccttttattacccagggatgatggaccacggtatgacacatcc 1094

                                                                        
Query: 418  ttcagttcaaagtttccaaggaaacataaacactgctcaagctcatacaccaccaacaat 477
            | | || |||| ||||||||| ||||||||||  |||||||  |||||||||| |||  |
Sbjct: 1095 tccggtgcaaaatttccaagggaacataaacaacgctcaagtgcatacaccacaaacgtt 1154

                                                                        
Query: 478  gctccatcaatacagtgtttatcaccaatcccatggtgcgtctacaatgccatcgtatca 537
            ||||| ||| || | |||||||| |||||  |||||||  ||||  |||||| | | |||
Sbjct: 1155 gctccctcagtataatgtttatccccaatgtcatggtgtatctatgatgccaccatttca 1214

                                
Query: 538  gtacaatcctgctggtatga 557
            ||| ||||||||||||||||
Sbjct: 1215 gtataatcctgctggtatga 1234



 Score =  107 bits (54), Expect = 4e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                       
Query: 29  tcatctccaggaggaatgttttcacgcccaataaagactaatttgaggatagctgagtca 88
           |||||||| |||| |||||||||||| |||||||||||||| |||||| | |||||||| 
Sbjct: 706 tcatctcccggagtaatgttttcacgtccaataaagactaacttgagggttgctgagtct 765

                                                             
Query: 89  tctgcatttctagcatatgttaaatcaagcactccagcaaacagctcatt 138
           ||||| |||||||| |||||||| |||||||| ||| | | |||||||||
Sbjct: 766 tctgcttttctagcttatgttaagtcaagcaccccaactaccagctcatt 815

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>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1014_H03
          Length = 132696

 Score =  151 bits (76), Expect = 3e-33
 Identities = 259/320 (80%)
 Strand = Plus / Plus

                                                                          
Query: 238    aaatattcaggatgaaaaagcttttgagatgcccacgcagtatcctttggtttgcttttc 297
              |||||||| |||| || |||| |||||||||||   ||| || ||| |||| ||||||||
Sbjct: 104971 aaatattcgggataaagaagcctttgagatgccagtgcaataccctgtggtatgcttttc 105030

                                                                          
Query: 298    ttcctctaacttgcaactggagcaaaggaatgagggtcaacaagatgtttcaggaaaccc 357
              ||||||||||||||| ||||||| ||| ||||| || ||| | |||| ||||||||  ||
Sbjct: 105031 ttcctctaacttgcatctggagcgaagcaatgaaggccaaaatgatgcttcaggaactcc 105090

                                                                          
Query: 358    tcctgtatatcattacccattttattatccagggatggtagagcatagcatggcacttca 417
              ||||||||||||||  || |||||||| ||||||||| | || ||  | ||| ||| || 
Sbjct: 105091 tcctgtatatcattttcccttttattacccagggatgatggaccacggtatgacacatcc 105150

                                                                          
Query: 418    ttcagttcaaagtttccaaggaaacataaacactgctcaagctcatacaccaccaacaat 477
              | | || |||| ||||||||| ||||||||||  |||||||  |||||||||| |||  |
Sbjct: 105151 tccggtgcaaaatttccaagggaacataaacaacgctcaagtgcatacaccacaaacgtt 105210

                                                                          
Query: 478    gctccatcaatacagtgtttatcaccaatcccatggtgcgtctacaatgccatcgtatca 537
              ||||| ||| || | |||||||| |||||  |||||||  ||||  |||||| | | |||
Sbjct: 105211 gctccctcagtataatgtttatccccaatgtcatggtgtatctatgatgccaccatttca 105270

                                  
Query: 538    gtacaatcctgctggtatga 557
              ||| ||||||||||||||||
Sbjct: 105271 gtataatcctgctggtatga 105290



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                          
Query: 30     catctccaggaggaatgttttcacgcccaataaagactaatttgaggatagctgagtcat 89
              ||||||| |||| |||||||||||| |||||||||||||| |||||| | |||||||| |
Sbjct: 104763 catctcccggagtaatgttttcacgtccaataaagactaacttgagggttgctgagtctt 104822

                                                               
Query: 90     ctgcatttctagcatatgttaaatcaagcactccagcaaacagctcatt 138
              |||| |||||||| |||||||| |||||||| ||| | | |||||||||
Sbjct: 104823 ctgcttttctagcttatgttaagtcaagcaccccaactaccagctcatt 104871

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>dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_C01
          Length = 124548

 Score =  151 bits (76), Expect = 3e-33
 Identities = 259/320 (80%)
 Strand = Plus / Plus

                                                                         
Query: 238   aaatattcaggatgaaaaagcttttgagatgcccacgcagtatcctttggtttgcttttc 297
             |||||||| |||| || |||| |||||||||||   ||| || ||| |||| ||||||||
Sbjct: 35419 aaatattcgggataaagaagcctttgagatgccagtgcaataccctgtggtatgcttttc 35478

                                                                         
Query: 298   ttcctctaacttgcaactggagcaaaggaatgagggtcaacaagatgtttcaggaaaccc 357
             ||||||||||||||| ||||||| ||| ||||| || ||| | |||| ||||||||  ||
Sbjct: 35479 ttcctctaacttgcatctggagcgaagcaatgaaggccaaaatgatgcttcaggaactcc 35538

                                                                         
Query: 358   tcctgtatatcattacccattttattatccagggatggtagagcatagcatggcacttca 417
             ||||||||||||||  || |||||||| ||||||||| | || ||  | ||| ||| || 
Sbjct: 35539 tcctgtatatcattttcccttttattacccagggatgatggaccacggtatgacacatcc 35598

                                                                         
Query: 418   ttcagttcaaagtttccaaggaaacataaacactgctcaagctcatacaccaccaacaat 477
             | | || |||| ||||||||| ||||||||||  |||||||  |||||||||| |||  |
Sbjct: 35599 tccggtgcaaaatttccaagggaacataaacaacgctcaagtgcatacaccacaaacgtt 35658

                                                                         
Query: 478   gctccatcaatacagtgtttatcaccaatcccatggtgcgtctacaatgccatcgtatca 537
             ||||| ||| || | |||||||| |||||  |||||||  ||||  |||||| | | |||
Sbjct: 35659 gctccctcagtataatgtttatccccaatgtcatggtgtatctatgatgccaccatttca 35718

                                 
Query: 538   gtacaatcctgctggtatga 557
             ||| ||||||||||||||||
Sbjct: 35719 gtataatcctgctggtatga 35738



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                         
Query: 30    catctccaggaggaatgttttcacgcccaataaagactaatttgaggatagctgagtcat 89
             ||||||| |||| |||||||||||| |||||||||||||| |||||| | |||||||| |
Sbjct: 35211 catctcccggagtaatgttttcacgtccaataaagactaacttgagggttgctgagtctt 35270

                                                              
Query: 90    ctgcatttctagcatatgttaaatcaagcactccagcaaacagctcatt 138
             |||| |||||||| |||||||| |||||||| ||| | | |||||||||
Sbjct: 35271 ctgcttttctagcttatgttaagtcaagcaccccaactaccagctcatt 35319

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>dbj|AK111828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064H19, full
            insert sequence
          Length = 2261

 Score =  151 bits (76), Expect = 3e-33
 Identities = 259/320 (80%)
 Strand = Plus / Plus

                                                                        
Query: 238  aaatattcaggatgaaaaagcttttgagatgcccacgcagtatcctttggtttgcttttc 297
            |||||||| |||| || |||| |||||||||||   ||| || ||| |||| ||||||||
Sbjct: 1347 aaatattcgggataaagaagcctttgagatgccagtgcaataccctgtggtatgcttttc 1406

                                                                        
Query: 298  ttcctctaacttgcaactggagcaaaggaatgagggtcaacaagatgtttcaggaaaccc 357
            ||||||||||||||| ||||||| ||| ||||| || ||| | |||| ||||||||  ||
Sbjct: 1407 ttcctctaacttgcatctggagcgaagcaatgaaggccaaaatgatgcttcaggaactcc 1466

                                                                        
Query: 358  tcctgtatatcattacccattttattatccagggatggtagagcatagcatggcacttca 417
            ||||||||||||||  || |||||||| ||||||||| | || ||  | ||| ||| || 
Sbjct: 1467 tcctgtatatcattttcccttttattacccagggatgatggaccacggtatgacacatcc 1526

                                                                        
Query: 418  ttcagttcaaagtttccaaggaaacataaacactgctcaagctcatacaccaccaacaat 477
            | | || |||| ||||||||| ||||||||||  |||||||  |||||||||| |||  |
Sbjct: 1527 tccggtgcaaaatttccaagggaacataaacaacgctcaagtgcatacaccacaaacgtt 1586

                                                                        
Query: 478  gctccatcaatacagtgtttatcaccaatcccatggtgcgtctacaatgccatcgtatca 537
            ||||| ||| || | |||||||| |||||  |||||||  ||||  |||||| | | |||
Sbjct: 1587 gctccctcagtataatgtttatccccaatgtcatggtgtatctatgatgccaccatttca 1646

                                
Query: 538  gtacaatcctgctggtatga 557
            ||| ||||||||||||||||
Sbjct: 1647 gtataatcctgctggtatga 1666



 Score =  107 bits (54), Expect = 4e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                        
Query: 29   tcatctccaggaggaatgttttcacgcccaataaagactaatttgaggatagctgagtca 88
            |||||||| |||| |||||||||||| |||||||||||||| |||||| | |||||||| 
Sbjct: 1138 tcatctcccggagtaatgttttcacgtccaataaagactaacttgagggttgctgagtct 1197

                                                              
Query: 89   tctgcatttctagcatatgttaaatcaagcactccagcaaacagctcatt 138
            ||||| |||||||| |||||||| |||||||| ||| | | |||||||||
Sbjct: 1198 tctgcttttctagcttatgttaagtcaagcaccccaactaccagctcatt 1247

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>gb|AC159998.6| Mus musculus BAC clone RP24-576J22 from chromosome 10, complete
             sequence
          Length = 166313

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 406   catggcacttcattcagttcaaagtttc 433
             |||||||||||||||||||||| |||||
Sbjct: 44060 catggcacttcattcagttcaatgtttc 44033

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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 288    tttgcttttcttcctctaactt 309
              ||||||||||||||||||||||
Sbjct: 212585 tttgcttttcttcctctaactt 212606

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>gb|AC156365.3| Bos taurus clone RP42-18L9, complete sequence
          Length = 153415

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 288   tttgcttttcttcctctaactt 309
             ||||||||||||||||||||||
Sbjct: 92094 tttgcttttcttcctctaactt 92115

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>gb|AC154492.2| Mus musculus BAC clone RP24-107B10 from chromosome 17, complete
             sequence
          Length = 172605

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 436   aggaaacataaacactgctca 456
             |||||||||||||||||||||
Sbjct: 57620 aggaaacataaacactgctca 57600

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>gb|AY046568.1| Gallus gallus cryptochrome 2 (Cry2) gene, partial cds
          Length = 7622

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 565  ttcaagtcacttgtcaatgca 585
            |||||||||||||||||||||
Sbjct: 4556 ttcaagtcacttgtcaatgca 4576

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>gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complete sequence
          Length = 191764

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 412    acttcattcagttcaaagttt 432
              |||||||||||||||||||||
Sbjct: 169772 acttcattcagttcaaagttt 169752

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>gb|AC138720.5| Mus musculus BAC clone RP23-192O12 from chromosome 3, complete sequence
          Length = 191825

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 412    acttcattcagttcaaagttt 432
              |||||||||||||||||||||
Sbjct: 171813 acttcattcagttcaaagttt 171833

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>gb|AC132303.3| Mus musculus BAC clone RP24-281P9 from chromosome 19, complete sequence
          Length = 177097

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 287    gtttgcttttcttcctctaacttg 310
              ||||| ||||||||||||||||||
Sbjct: 132949 gtttgtttttcttcctctaacttg 132926

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>gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, complete sequence
          Length = 217334

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    atctccaggaggaatgtttt 50
             ||||||||||||||||||||
Sbjct: 30427 atctccaggaggaatgtttt 30446

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>gb|AC112271.4| Mus musculus BAC clone RP24-121H20 from chromosome 19, complete
             sequence
          Length = 170681

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   gtttgcttttcttcctctaacttg 310
             ||||| ||||||||||||||||||
Sbjct: 46694 gtttgtttttcttcctctaacttg 46671

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>ref|XM_661576.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.70109)
           partial mRNA
          Length = 780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 ataagttagatattgtggat 184
           ||||||||||||||||||||
Sbjct: 380 ataagttagatattgtggat 399

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>emb|BX927248.6| Zebrafish DNA sequence from clone CH211-140C22 in linkage group 6,
             complete sequence
          Length = 81373

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tgcatttctagcatatgtta 110
             ||||||||||||||||||||
Sbjct: 14166 tgcatttctagcatatgtta 14147

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>emb|AL590627.25| Human DNA sequence from clone RP13-467E5 on chromosome 9 Contains a
             pseudogene similar to part of SET translocation (myeloid
             leukemia-associated) (SET), the 5' end of the gene for
             euchromatic histone methyltransferase 1 (FLJ12879,
             KIAA1876) (Eu-HMTase1) and two CpG islands, complete
             sequence
          Length = 166141

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 425   caaagtttccaaggaaacataaac 448
             |||| |||||||||||||||||||
Sbjct: 14874 caaattttccaaggaaacataaac 14851

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>emb|AL359824.17| Human DNA sequence from clone RP11-651K6 on chromosome 6, complete
             sequence
          Length = 26734

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   caaagtttccaaggaaacat 444
             ||||||||||||||||||||
Sbjct: 25765 caaagtttccaaggaaacat 25746

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>emb|AL162456.14| Human DNA sequence from clone RP11-95C14 on chromosome 13 Contains part
              of the GPC5 gene for glypican 5, complete sequence
          Length = 165100

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     atttctagcatatgttaaat 113
              ||||||||||||||||||||
Sbjct: 114597 atttctagcatatgttaaat 114616

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>emb|CR848664.5| Zebrafish DNA sequence from clone CH211-169I9 in linkage group 15,
              complete sequence
          Length = 139504

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     gcatttctagcatatgttaa 111
              ||||||||||||||||||||
Sbjct: 106103 gcatttctagcatatgttaa 106122

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>emb|CR381673.7| Zebrafish DNA sequence from clone CH211-209J3 in linkage group 2,
             complete sequence
          Length = 209097

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tgcatttctagcatatgtta 110
             ||||||||||||||||||||
Sbjct: 81133 tgcatttctagcatatgtta 81152

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>dbj|AK137399.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630045M20 product:hypothetical
           protein, full insert sequence
          Length = 3120

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 287 gtttgcttttcttcctctaacttg 310
           ||||| ||||||||||||||||||
Sbjct: 339 gtttgtttttcttcctctaacttg 362

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>gb|AC109630.2| Homo sapiens chromosome 15, clone RP11-624L4, complete sequence
          Length = 163976

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   aatgcagaatgtgtggtcat 599
             ||||||||||||||||||||
Sbjct: 65478 aatgcagaatgtgtggtcat 65497

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>ref|XM_628273.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_870),
           partial mRNA
          Length = 780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 ataagttagatattgtggat 184
           ||||||||||||||||||||
Sbjct: 380 ataagttagatattgtggat 399

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>gb|AC096683.2| Gallus gallus clone WAG-68G2, complete sequence
          Length = 110417

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   tggtttgcttttcttcctct 304
             ||||||||||||||||||||
Sbjct: 64654 tggtttgcttttcttcctct 64635

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>dbj|AK193980.1| Mus musculus cDNA, clone:Y1G0113P04, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000045402, based on BLAT search
          Length = 359

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 295 ttcttcctctaacttgcaac 314
           ||||||||||||||||||||
Sbjct: 263 ttcttcctctaacttgcaac 282

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>emb|AL118556.4|CNS01DRR Human chromosome 14 DNA sequence BAC R-406H23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170597

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   aaagtttccaaggaaacata 445
             ||||||||||||||||||||
Sbjct: 49021 aaagtttccaaggaaacata 49040

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>gb|AC113471.9| Mus musculus chromosome 7, clone RP23-268E17, complete sequence
          Length = 200878

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   ggtttgcttttcttcctcta 305
             ||||||||||||||||||||
Sbjct: 75398 ggtttgcttttcttcctcta 75379

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>gb|AC132356.3| Mus musculus BAC clone RP24-119I6 from 1, complete sequence
          Length = 184142

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tgcatttctagcatatgtta 110
             ||||||||||||||||||||
Sbjct: 95413 tgcatttctagcatatgtta 95394

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>emb|AL808109.6| Mouse DNA sequence from clone RP23-435P19 on chromosome 4, complete
             sequence
          Length = 51860

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   catcaatacagtgtttatca 501
             ||||||||||||||||||||
Sbjct: 42833 catcaatacagtgtttatca 42852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,093,715
Number of Sequences: 3902068
Number of extensions: 6093715
Number of successful extensions: 120907
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120782
Number of HSP's gapped (non-prelim): 125
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result