ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9h08 |
|---|---|
| Clone Library Name | barley_pub |
>CSN4_ARATH (Q8L5U0) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4) Length = 397 Score = 326 bits (835), Expect = 3e-89 Identities = 166/181 (91%), Positives = 174/181 (96%) Frame = +1 Query: 28 IQPRVVSFEEQVVVIREKLAELYESEQQWSRAAQMLSGIDLDSGIRMLDDTNKLSKCVQI 207 IQPRVVSFEEQ +VIREKLA LYESEQ+WS+AAQMLSGIDLDSG+R +DD KLSKC+QI Sbjct: 84 IQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLSGIDLDSGMRAVDDNFKLSKCIQI 143 Query: 208 ARLYLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGI 387 ARLYLEDDDAVNAEAFINKASFLV+NS EVLNLQYKVCYARILD+KRKFLEAALRYYGI Sbjct: 144 ARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYKVCYARILDMKRKFLEAALRYYGI 203 Query: 388 SQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPIL 567 SQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPIL Sbjct: 204 SQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPIL 263 Query: 568 Q 570 Q Sbjct: 264 Q 264
>CSN4_RAT (Q68FS2) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (SGN4) (JAB1-containing signalosome subunit 4) Length = 406 Score = 182 bits (462), Expect = 6e-46 Identities = 96/181 (53%), Positives = 127/181 (70%) Frame = +1 Query: 28 IQPRVVSFEEQVVVIREKLAELYESEQQWSRAAQMLSGIDLDSGIRMLDDTNKLSKCVQI 207 +QPRV+SFEEQV IR++LA +YE E+ W AAQ+L GI L++G + + KL ++I Sbjct: 92 VQPRVISFEEQVASIRQRLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKI 151 Query: 208 ARLYLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGI 387 ARLYLEDDD V AEA+IN+AS L S E L + YKVCYAR+LD +RKF+EAA RY Sbjct: 152 ARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRY--- 208 Query: 388 SQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPIL 567 +++ + I + E+ +AL A+ CTILA AG QRSR+LATL+KDERC +L Y IL Sbjct: 209 NELSYKTI----VHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGIL 264 Query: 568 Q 570 + Sbjct: 265 E 265
>CSN4_MOUSE (O88544) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (SGN4) (JAB1-containing signalosome subunit 4) Length = 406 Score = 181 bits (460), Expect = 1e-45 Identities = 97/181 (53%), Positives = 126/181 (69%) Frame = +1 Query: 28 IQPRVVSFEEQVVVIREKLAELYESEQQWSRAAQMLSGIDLDSGIRMLDDTNKLSKCVQI 207 IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + KL ++I Sbjct: 92 IQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKI 151 Query: 208 ARLYLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGI 387 ARLYLEDDD V AEA+IN+AS L S E L + YKVCYAR+LD +RKF+EAA RY Sbjct: 152 ARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRY--- 208 Query: 388 SQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPIL 567 +++ + I + E+ +AL A+ CTILA AG QRSR+LATL+KDERC +L Y IL Sbjct: 209 NELSYKTI----VHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGIL 264 Query: 568 Q 570 + Sbjct: 265 E 265
>CSN4_HUMAN (Q9BT78) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (SGN4) (JAB1-containing signalosome subunit 4) Length = 406 Score = 181 bits (460), Expect = 1e-45 Identities = 97/181 (53%), Positives = 126/181 (69%) Frame = +1 Query: 28 IQPRVVSFEEQVVVIREKLAELYESEQQWSRAAQMLSGIDLDSGIRMLDDTNKLSKCVQI 207 IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + KL ++I Sbjct: 92 IQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKI 151 Query: 208 ARLYLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGI 387 ARLYLEDDD V AEA+IN+AS L S E L + YKVCYAR+LD +RKF+EAA RY Sbjct: 152 ARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRY--- 208 Query: 388 SQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPIL 567 +++ + I + E+ +AL A+ CTILA AG QRSR+LATL+KDERC +L Y IL Sbjct: 209 NELSYKTI----VHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGIL 264 Query: 568 Q 570 + Sbjct: 265 E 265
>CSN4_BRARE (Q6P0H6) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| Length = 406 Score = 180 bits (456), Expect = 3e-45 Identities = 96/181 (53%), Positives = 125/181 (69%) Frame = +1 Query: 28 IQPRVVSFEEQVVVIREKLAELYESEQQWSRAAQMLSGIDLDSGIRMLDDTNKLSKCVQI 207 IQPRV+SFEEQV IR+ LA +YE ++ W AAQ+L GI L++G + + KL ++I Sbjct: 92 IQPRVISFEEQVASIRQHLATIYEKQEDWRNAAQVLVGIPLETGQKQYNVDYKLDTYLKI 151 Query: 208 ARLYLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGI 387 ARLYLEDDD V AEA+IN+AS L S E L + YKVCYAR+LD +RKF+EAA RY Sbjct: 152 ARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRY--- 208 Query: 388 SQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPIL 567 +++ + I + E +AL A+ CTILA AG QRSR+LATL+KDERC +L Y IL Sbjct: 209 NELSYKSI----VHETERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGIL 264 Query: 568 Q 570 + Sbjct: 265 E 265
>CSN4_DROME (Q9V345) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (Dch4) Length = 407 Score = 174 bits (440), Expect = 2e-43 Identities = 94/181 (51%), Positives = 122/181 (67%) Frame = +1 Query: 28 IQPRVVSFEEQVVVIREKLAELYESEQQWSRAAQMLSGIDLDSGIRMLDDTNKLSKCVQI 207 + PRV+SFEEQV IR LA +YE QQW AA +L GI L++G + KL ++I Sbjct: 99 VNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVECKLGTYLKI 158 Query: 208 ARLYLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGI 387 ARLYLED+D+V AE FIN+AS L +N E L + YKVCYAR+LD +RKF+EAA RY Sbjct: 159 ARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDYRRKFIEAAQRY--- 215 Query: 388 SQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPIL 567 +++ R+I +D+ AL A+ CT+LA AG QRSR+LATL+KDERC L Y IL Sbjct: 216 NELSYRKI----VDQGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYGIL 271 Query: 568 Q 570 + Sbjct: 272 E 272
>CSN4_CAEEL (Q9N359) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| Length = 412 Score = 110 bits (275), Expect = 3e-24 Identities = 66/187 (35%), Positives = 106/187 (56%), Gaps = 7/187 (3%) Frame = +1 Query: 28 IQPRVVSFEEQVVVIREKLAELYESEQQWSRAAQMLSGIDLDS-----GIRMLDDTNKLS 192 I+ R +S+E+QV ++R LA LYE E + AAQ L I+ D+ G + + K Sbjct: 99 IKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQAAKEGAKAQ 158 Query: 193 KCVQIARLYLEDDDAVNAEAFINKASFLVTN--SNQEVLNLQYKVCYARILDLKRKFLEA 366 C++I +L L+ + AE ++N+ S L+ + +N ++ +++K AR+ D KR+F+EA Sbjct: 159 LCIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDI-QIEHKALQARVSDAKRRFVEA 217 Query: 367 ALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSK 546 A RYY +S EQ D+ AL A+ C +LA GPQRSR+L ++KDER K Sbjct: 218 AQRYYELSATEQLPNSDKLT-------ALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPK 270 Query: 547 LKIYPIL 567 + ++ Sbjct: 271 CASFELI 277
>CSN4_SCHPO (O13895) COP9 signalosome complex subunit 4 (CSN complex subunit 4)| (SGN4) Length = 377 Score = 39.3 bits (90), Expect = 0.008 Identities = 37/164 (22%), Positives = 71/164 (43%) Frame = +1 Query: 79 KLAELYESEQQWSRAAQMLSGIDLDSGIRMLDDTNKLSKCVQIARLYLEDDDAVNAEAFI 258 +LA +YE+EQ + L ++ D L +++ YL+ A A + Sbjct: 100 QLATIYEAEQNFELLCSSLEAVEKHGHFEN-DLEQLLLLRIRLGDAYLKLGKAEKAILTV 158 Query: 259 NKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGISQIEQRQIGDEEIDENA 438 + L + + L ++ ++C AR LD +FLEAA YY + ++ + G+E I Sbjct: 159 RTSIPLAFKVSNDQLLMELQLCNARALDETGQFLEAAKCYYRV--LQYKVPGNELI---- 212 Query: 439 LEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQ 570 + L + C +LA P + L + ++ Y +++ Sbjct: 213 YRENLCSVAQCLLLAIPSPIVLQFLQEISLQPSVREIPFYSLVE 256
>CSN4_BRAOL (P68359) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (Fragments) Length = 45 Score = 36.6 bits (83), Expect = 0.051 Identities = 16/20 (80%), Positives = 19/20 (95%) Frame = +1 Query: 346 KRKFLEAALRYYGISQIEQR 405 KRKFL+AALRYY ISQIE++ Sbjct: 1 KRKFLDAALRYYSISQIEKK 20
>SMC_METJA (Q59037) Chromosome partition protein smc homolog| Length = 1169 Score = 32.0 bits (71), Expect = 1.3 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 5/149 (3%) Frame = +1 Query: 13 TRSRXIQPR--VVSFEEQVVVIREKLAEL-YESEQQWSRAAQMLSGID--LDSGIRMLDD 177 T+ + I+ R ++ E+Q+ I EK+ L YE E+ A+ S I +S + + D+ Sbjct: 340 TQKKIIENRDSIIEKEQQIKEIEEKIKNLNYEKERLKEAIAESESIIKHLKESEMEIADE 399 Query: 178 TNKLSKCVQIARLYLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKF 357 K ++ RL E +D N IN+ +F + +N+ + L+ ++ +D K + Sbjct: 400 IAKNQN--ELYRLKKELNDLDN---LINRKNFEIEKNNEMIKKLKEELETVEDVDTKPLY 454 Query: 358 LEAALRYYGISQIEQRQIGDEEIDENALE 444 LE L + +IE + G +E++E E Sbjct: 455 LE--LENLNV-EIEFSKRGIKELEEKKKE 480
>SMC4_XENLA (P50532) Structural maintenance of chromosome 4| (Chromosome-associated protein C) (Chromosome assembly protein XCAP-C) Length = 1290 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/46 (30%), Positives = 27/46 (58%) Frame = +1 Query: 1 RSPTTRSRXIQPRVVSFEEQVVVIREKLAELYESEQQWSRAAQMLS 138 ++ TTR+ IQ R EE+V +R+ E+ + ++++ + Q LS Sbjct: 778 KTDTTRATEIQDRKAHLEEEVAKLRQATREMKNTFEKYTASLQSLS 823
>YEGH_SHIFL (Q83KI8) Hypothetical UPF0053 protein yegH| Length = 527 Score = 29.6 bits (65), Expect = 6.3 Identities = 26/97 (26%), Positives = 41/97 (42%) Frame = +1 Query: 163 RMLDDTNKLSKCVQIARLYLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILD 342 R L L + A + L +AE AS LV + NQ++ N Q + R+L+ Sbjct: 237 RFLSANQTLRQRTTEAVMRLLSGQKEDAELDAKTASMLVDHGNQQIFNPQERRMIERVLN 296 Query: 343 LKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQAL 453 L ++ +S I + E ID NA E+ + Sbjct: 297 LNQR---------TVSSIMTSRHDIEHIDLNAPEEEI 324
>YEGH_ECOLI (P76389) Hypothetical UPF0053 protein yegH| Length = 527 Score = 29.6 bits (65), Expect = 6.3 Identities = 26/97 (26%), Positives = 41/97 (42%) Frame = +1 Query: 163 RMLDDTNKLSKCVQIARLYLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILD 342 R L L + A + L +AE AS LV + NQ++ N Q + R+L+ Sbjct: 237 RFLSANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVDHGNQQIFNPQERRMIERVLN 296 Query: 343 LKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQAL 453 L ++ +S I + E ID NA E+ + Sbjct: 297 LNQR---------TVSSIMTSRHDIEHIDLNAPEEEI 324
>RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3963 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -2 Query: 519 CSKNARALWASTSQYCACYSSTKSLLKSIFINLFIPNLALLNL 391 C+ NAR A YC S +SLL +NL +P L +L L Sbjct: 10 CTPNARVFVAEGQVYCTRCLSARSLLP---LNLQVPELGVLGL 49
>GCN1L_HUMAN (Q92616) GCN1-like protein 1 (HsGCN1)| Length = 2670 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +2 Query: 134 LVALTWTQESGCLMTQTNYPSASRLHDSIWRMMMQ*MLKLL 256 L+ALTWT CL+ + +PS ++ IW +++ LL Sbjct: 113 LLALTWT----CLLVRIVFPSRAKRQGDIWNKLVEVQCLLL 149
>VK07_VACCV (P68466) Protein K7| Length = 149 Score = 29.3 bits (64), Expect = 8.2 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Frame = +1 Query: 217 YLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGISQI 396 +++DD + ++ I+ +T N ++ + R+ KF + A+RYYGI +I Sbjct: 14 FVDDDKICSRDSIIDLIDEYITWRNHVIVFNKDITSCGRLYKELMKFDDVAIRYYGIDKI 73 Query: 397 ----EQRQIGDEEIDENALEQALSAAVTCTILA 483 E GD I+ + S T I A Sbjct: 74 NEIVEAMSEGDHYINFTKVHDQESLFATIGICA 106
>VK07_VACCC (P68467) Protein K7| Length = 149 Score = 29.3 bits (64), Expect = 8.2 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Frame = +1 Query: 217 YLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGISQI 396 +++DD + ++ I+ +T N ++ + R+ KF + A+RYYGI +I Sbjct: 14 FVDDDKICSRDSIIDLIDEYITWRNHVIVFNKDITSCGRLYKELMKFDDVAIRYYGIDKI 73 Query: 397 ----EQRQIGDEEIDENALEQALSAAVTCTILA 483 E GD I+ + S T I A Sbjct: 74 NEIVEAMSEGDHYINFTKVHDQESLFATIGICA 106
>VK07_VACCA (Q76ZX2) Protein K7| Length = 149 Score = 29.3 bits (64), Expect = 8.2 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Frame = +1 Query: 217 YLEDDDAVNAEAFINKASFLVTNSNQEVLNLQYKVCYARILDLKRKFLEAALRYYGISQI 396 +++DD + ++ I+ +T N ++ + R+ KF + A+RYYGI +I Sbjct: 14 FVDDDKICSRDSIIDLIDEYITWRNHVIVFNKDITSCGRLYKELMKFDDVAIRYYGIDKI 73 Query: 397 ----EQRQIGDEEIDENALEQALSAAVTCTILA 483 E GD I+ + S T I A Sbjct: 74 NEIVEAMSEGDHYINFTKVHDQESLFATIGICA 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,200,776 Number of Sequences: 219361 Number of extensions: 1397866 Number of successful extensions: 3680 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3595 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3669 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
