ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9h08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092I05, full insert sequence Length = 1568 Score = 712 bits (359), Expect = 0.0 Identities = 519/571 (90%), Gaps = 1/571 (0%) Strand = Plus / Plus Query: 1 aggtcgcccactacgcgctcacgcagnatccagcctcgtgtggtctccttcgaggagcag 60 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 370 aggtcgcgcactacgcgctcacgcag-atccagcctcgtgtggtctccttcgaggagcag 428 Query: 61 gtagtagtgattagagagaagcttgcagaactgtatgaatctgaacaacaatggtcgaga 120 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | Sbjct: 429 gtggtagtgattagagagaagcttgcagaactgtatgagtctgaacaacaatggtcaaaa 488 Query: 121 gcagcacaaatgcttagtggcattgacttggactcaggaatcaggatgcttgatgacaca 180 || ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||| Sbjct: 489 gctgcacagatgcttagtgggattgacttggactcagggatcaggatgctggatgacaca 548 Query: 181 aacaaattatccaagtgcgtccagattgcacgactctatttggaggatgatgatgcagtg 240 |||||||||||||| || ||||||||||||||||| ||||| |||||||||||| | || Sbjct: 549 aacaaattatccaaatgtgtccagattgcacgactttatttagaggatgatgattctgtt 608 Query: 241 aatgctgaagcttttatcaacaaagcctcgtttttggtcacaaacagcaaccaggaagtt 300 ||||||||||||||||| |||||||| || |||||||| |||||||| |||| ||| || Sbjct: 609 aatgctgaagcttttattaacaaagcttcatttttggtaacaaacagtcaccaagaactt 668 Query: 301 ctgaacttacaatacaaggtctgctatgcgagaattttagatctaaaacgtaaattcttg 360 ||||||||||| |||||||| ||||| || |||||||| ||||| || | | ||||||| Sbjct: 669 ctgaacttacagtacaaggtatgctacgctagaattttggatctgaagagaagattcttg 728 Query: 361 gaagctgcacttcgatactatggtatctctcagattgagcaacgccaaattggggatgaa 420 |||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 729 gaagctgcacttcgatactatgacatctctcagattgaacaacgccaaattggtgacgaa 788 Query: 421 gagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcacaatattg 480 ||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct: 789 gagatcgatgaaaatgctttggagcaagctcttagtgctgctgtgacatgcacaatattg 848 Query: 481 gctggtgctggcccacaacgctctcgcgttcttgctacattgtacaaggatgaaagatgc 540 ||||||||||| || ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 849 gctggtgctggtccgcaacgatctcgtgttcttgctacattgtacaaggatgagagatgc 908 Query: 541 tcaaagctcaagatatacccaatactgcaga 571 |||||| | |||||||||||||||||||||| Sbjct: 909 tcaaagttgaagatatacccaatactgcaga 939
>dbj|AK104905.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-G04, full insert sequence Length = 1519 Score = 696 bits (351), Expect = 0.0 Identities = 517/571 (90%), Gaps = 1/571 (0%) Strand = Plus / Plus Query: 1 aggtcgcccactacgcgctcacgcagnatccagcctcgtgtggtctccttcgaggagcag 60 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 325 aggtcgcgcactacgcgctcacgcag-atccagcctcgtgtggtctccttcgaggagcag 383 Query: 61 gtagtagtgattagagagaagcttgcagaactgtatgaatctgaacaacaatggtcgaga 120 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | Sbjct: 384 gtggtagtgattagagagaagcttgcagaactgtatgagtctgaacaacaatggtcaaaa 443 Query: 121 gcagcacaaatgcttagtggcattgacttggactcaggaatcaggatgcttgatgacaca 180 || ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||| Sbjct: 444 gctgcacagatgcttagtgggattgacttggactcagggatcaggatgctggatgacaca 503 Query: 181 aacaaattatccaagtgcgtccagattgcacgactctatttggaggatgatgatgcagtg 240 |||||||||||||| || ||||||||||||||||| ||||| || ||||||||| | || Sbjct: 504 aacaaattatccaaatgtgtccagattgcacgactttatttagaagatgatgattctgtt 563 Query: 241 aatgctgaagcttttatcaacaaagcctcgtttttggtcacaaacagcaaccaggaagtt 300 ||||||||||||||||| |||| ||| || |||||||| |||||||| |||| ||| || Sbjct: 564 aatgctgaagcttttattaacagagcttcatttttggtaacaaacagtcaccaagaactt 623 Query: 301 ctgaacttacaatacaaggtctgctatgcgagaattttagatctaaaacgtaaattcttg 360 ||||||||||| |||||||| ||||| || |||||||| ||||| || | | ||||||| Sbjct: 624 ctgaacttacagtacaaggtatgctacgctagaattttggatctgaagagaagattcttg 683 Query: 361 gaagctgcacttcgatactatggtatctctcagattgagcaacgccaaattggggatgaa 420 |||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 684 gaagctgcacttcgatactatgacatctctcagattgaacaacgccaaattggtgacgaa 743 Query: 421 gagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcacaatattg 480 ||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct: 744 gagatcgatgaaaatgctttggagcaagctcttagtgctgctgtgacatgcacaatattg 803 Query: 481 gctggtgctggcccacaacgctctcgcgttcttgctacattgtacaaggatgaaagatgc 540 ||||||||||| || ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 804 gctggtgctggtccgcaacgatctcgtgttcttgctacattgtacaaggatgagagatgc 863 Query: 541 tcaaagctcaagatatacccaatactgcaga 571 |||||| | |||||||||||||||||||||| Sbjct: 864 tcaaagttgaagatatacccaatactgcaga 894
>gb|AY109882.1| Zea mays CL3083_1 mRNA sequence Length = 1578 Score = 632 bits (319), Expect = e-178 Identities = 509/571 (89%), Gaps = 1/571 (0%) Strand = Plus / Minus Query: 1 aggtcgcccactacgcgctcacgcagnatccagcctcgtgtggtctccttcgaggagcag 60 |||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 1238 aggttgcccactacgcgctcacgcag-atccagccgcgtgtggtctccttcgaggagcag 1180 Query: 61 gtagtagtgattagagagaagcttgcagaactgtatgaatctgaacaacaatggtcgaga 120 || |||||||||||||||||||||||||| || ||||| ||||||||||||||||| | | Sbjct: 1179 gtggtagtgattagagagaagcttgcagagctatatgagtctgaacaacaatggtcaaaa 1120 Query: 121 gcagcacaaatgcttagtggcattgacttggactcaggaatcaggatgcttgatgacaca 180 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 1119 gcagcacaaatgcttagtgggattgacttggattcaggaatcaggatgcttgatgacacc 1060 Query: 181 aacaaattatccaagtgcgtccagattgcacgactctatttggaggatgatgatgcagtg 240 ||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||| Sbjct: 1059 aacaaattatccaagtgtgttcaaattgcacgactctatttagaggatgatgatgcagtg 1000 Query: 241 aatgctgaagcttttatcaacaaagcctcgtttttggtcacaaacagcaaccaggaagtt 300 |||||||| |||||||| ||||| || || | |||||| |||||| | ||||| ||| Sbjct: 999 aatgctgaggcttttataaacaaggcttcatggcaggtcaccaacagccatcaggaggtt 940 Query: 301 ctgaacttacaatacaaggtctgctatgcgagaattttagatctaaaacgtaaattcttg 360 || |||||||| ||||||||||| ||||| || ||||| ||||| ||| | | ||| || Sbjct: 939 ctaaacttacagtacaaggtctgttatgcaaggattttggatctgaaaagaagatttctg 880 Query: 361 gaagctgcacttcgatactatggtatctctcagattgagcaacgccaaattggggatgaa 420 ||||||||||||||||| |||| || ||||| ||||| |||||| | ||||| || ||| Sbjct: 879 gaagctgcacttcgatattatgacatttctcaaattgaacaacgcaagattggagacgaa 820 Query: 421 gagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcacaatattg 480 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 819 gagattgatgaaaatgcacttgagcaagctcttagtgctgctgtgacatgcacaatattg 760 Query: 481 gctggtgctggcccacaacgctctcgcgttcttgctacattgtacaaggatgaaagatgc 540 ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| Sbjct: 759 gctggtgctggtccacaacgctcccgtgttcttgctactctgtacaaggatgaaagatgc 700 Query: 541 tcaaagctcaagatatacccaatactgcaga 571 || ||| | || ||||||||||||||||||| Sbjct: 699 tcgaagttgaaaatatacccaatactgcaga 669
>gb|AF508278.1| Lilium longiflorum COP8-like protein mRNA, complete cds Length = 1627 Score = 240 bits (121), Expect = 4e-60 Identities = 421/521 (80%) Strand = Plus / Plus Query: 43 gtctccttcgaggagcaggtagtagtgattagagagaagcttgcagaactgtatgaatct 102 ||||| || |||||||||||| | | || |||||||||||||| ||| |||||||||| Sbjct: 351 gtctcgtttgaggagcaggtattgatcatcagagagaagcttgctgaattgtatgaatcc 410 Query: 103 gaacaacaatggtcgagagcagcacaaatgcttagtggcattgacttggactcaggaatc 162 || | || ||||| | ||||||||||||| | ||||| ||||| |||||||||||| Sbjct: 411 gaggagcagtggtcaaaagcagcacaaatgttaagtgggattgatctggactcaggaaat 470 Query: 163 aggatgcttgatgacacaaacaaattatccaagtgcgtccagattgcacgactctatttg 222 |||| | | ||||| | |||| | || || || ||||| ||||| || |||||| | Sbjct: 471 aggacgatcgatgaagcgtacaagctgtctaaatgtgtccaaattgctcgtctctatctt 530 Query: 223 gaggatgatgatgcagtgaatgctgaagcttttatcaacaaagcctcgtttttggtcaca 282 |||||||||||||| | ||||| ||||||||||||||||| || || ||||| || | Sbjct: 531 gaggatgatgatgccatcaatgcagaagcttttatcaacaaggcatcatttttagttagc 590 Query: 283 aacagcaaccaggaagttctgaacttacaatacaaggtctgctatgcgagaattttagat 342 || || | || ||||| |||||||| ||||||||||| || ||||| || || |||||| Sbjct: 591 aatagtcaacaagaagtcctgaacttgcaatacaaggtttgttatgcaaggatattagat 650 Query: 343 ctaaaacgtaaattcttggaagctgcacttcgatactatggtatctctcagattgagcaa 402 || || | ||||| ||||| |||||||| || || |||| || || ||||||||| || Sbjct: 651 ctgaagaggaaatttttggaggctgcactccgttattatgacatttcccagattgagaaa 710 Query: 403 cgccaaattggggatgaagagattgatgaaaatgctcttgagcaagctcttagtgctgct 462 |||||||| || || || |||||||||||| |||| || || ||||||||||| |||||| Sbjct: 711 cgccaaatcggagacgaggagattgatgaagatgcactggaacaagctcttagcgctgct 770 Query: 463 gtaacatgcacaatattggctggtgctggcccacaacgctctcgcgttcttgctacattg 522 || || |||||||||||||||| |||||| |||||||||||||| ||||||||||| ||| Sbjct: 771 gtgacctgcacaatattggctgctgctggtccacaacgctctcgggttcttgctaccttg 830 Query: 523 tacaaggatgaaagatgctcaaagctcaagatatacccaat 563 || ||||||||| | ||||||||| | || |||||||||| Sbjct: 831 tataaggatgaacggtgctcaaagttgaaagtatacccaat 871
>gb|AF308813.1| Lilium longiflorum COP8-like protein mRNA, partial cds Length = 490 Score = 216 bits (109), Expect = 6e-53 Identities = 301/365 (82%) Strand = Plus / Plus Query: 199 gtccagattgcacgactctatttggaggatgatgatgcagtgaatgctgaagcttttatc 258 ||||| ||||| || |||||| | |||||||||||||| | ||||| |||||||||||| Sbjct: 18 gtccaaattgctcgtctctatcttgaggatgatgatgccatcaatgcagaagcttttatc 77 Query: 259 aacaaagcctcgtttttggtcacaaacagcaaccaggaagttctgaacttacaatacaag 318 ||||| || || ||||| || | || || | || ||||| |||||||| ||||||||| Sbjct: 78 aacaaggcatcatttttagttagcaatagtcaacaagaagtcctgaacttgcaatacaag 137 Query: 319 gtctgctatgcgagaattttagatctaaaacgtaaattcttggaagctgcacttcgatac 378 || || ||||| || || |||||||| || | ||||| ||||| |||||||| || || Sbjct: 138 gtttgttatgcaaggatattagatctgaagaggaaatttttggaggctgcactccgttat 197 Query: 379 tatggtatctctcagattgagcaacgccaaattggggatgaagagattgatgaaaatgct 438 |||| || || ||||||||| |||||||||| || || || |||||||||||| |||| Sbjct: 198 tatgacatttcccagattgagaaacgccaaatcggagacgaggagattgatgaagatgca 257 Query: 439 cttgagcaagctcttagtgctgctgtaacatgcacaatattggctggtgctggcccacaa 498 || || ||||||||||| |||||||| || |||||||||||||||| |||||| |||||| Sbjct: 258 ctggaacaagctcttagcgctgctgtgacctgcacaatattggctgctgctggtccacaa 317 Query: 499 cgctctcgcgttcttgctacattgtacaaggatgaaagatgctcaaagctcaagatatac 558 |||||||| ||||||||||| ||||| ||||||||| | ||||||||| | || ||||| Sbjct: 318 cgctctcgggttcttgctaccttgtataaggatgaacggtgctcaaagttgaaagtatac 377 Query: 559 ccaat 563 ||||| Sbjct: 378 ccaat 382
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 420 agagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcacaatatt 479 |||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| Sbjct: 5090100 agagatcgatgaaaatgctttggagcaagctcttagtgctgctgtgacatgcacaatatt 5090041 Query: 480 ggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaagg 529 |||||||||||| || ||||| ||||| |||||||||||||||||||||| Sbjct: 5090040 ggctggtgctggtccgcaacgatctcgtgttcttgctacattgtacaagg 5089991 Score = 151 bits (76), Expect = 3e-33 Identities = 100/108 (92%) Strand = Plus / Minus Query: 58 caggtagtagtgattagagagaagcttgcagaactgtatgaatctgaacaacaatggtcg 117 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 5090973 caggtggtagtgattagagagaagcttgcagaactgtatgagtctgaacaacaatggtca 5090914 Query: 118 agagcagcacaaatgcttagtggcattgacttggactcaggaatcagg 165 | ||| ||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 5090913 aaagctgcacagatgcttagtgggattgacttggactcagggatcagg 5090866 Score = 99.6 bits (50), Expect = 1e-17 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 1 aggtcgcccactacgcgctcacgcagnatccagcctcgtgtggtctccttcgaggagcag 60 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 5092433 aggtcgcgcactacgcgctcacgcag-atccagcctcgtgtggtctccttcgaggagcag 5092375 Query: 61 gt 62 || Sbjct: 5092374 gt 5092373 Score = 99.6 bits (50), Expect = 1e-17 Identities = 86/98 (87%) Strand = Plus / Minus Query: 316 aaggtctgctatgcgagaattttagatctaaaacgtaaattcttggaagctgcacttcga 375 ||||| ||||| || |||||||| ||||| || | | |||||||||||||||||||||| Sbjct: 5090465 aaggtatgctacgctagaattttggatctgaagagaagattcttggaagctgcacttcga 5090406 Query: 376 tactatggtatctctcagattgagcaacgccaaattgg 413 ||||||| |||||||||||||| |||||||||||||| Sbjct: 5090405 tactatgacatctctcagattgaacaacgccaaattgg 5090368 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 224 aggatgatgatgcagtgaatgctgaagcttttatcaacaaagcctcgtttttggtcacaa 283 ||||||||||| | || ||||||||||||||||| |||||||| || |||||||| |||| Sbjct: 5090646 aggatgatgattctgttaatgctgaagcttttattaacaaagcttcatttttggtaacaa 5090587 Query: 284 acagcaaccaggaagttctgaacttacaatacaaggt 320 |||| |||| ||| ||||||||||||| |||||||| Sbjct: 5090586 acagtcaccaagaacttctgaacttacagtacaaggt 5090550 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 160 atcaggatgcttgatgacacaaacaaattatccaagtgcgtccagattgcacgactctat 219 ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct: 5090784 atcaggatgctggatgacacaaacaaattatccaaatgtgtccagattgcacgactttat 5090725 Query: 220 ttggagg 226 || |||| Sbjct: 5090724 ttagagg 5090718 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 527 aggatgaaagatgctcaaagctcaagatatacccaatactgcaga 571 ||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 5089287 aggatgagagatgctcaaagttgaagatatacccaatactgcaga 5089243
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Plus Query: 420 agagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcacaatatt 479 |||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| Sbjct: 79605 agagatcgatgaaaatgctttggagcaagctcttagtgctgctgtgacatgcacaatatt 79664 Query: 480 ggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaagg 529 |||||||||||| || ||||| ||||| |||||||||||||||||||||| Sbjct: 79665 ggctggtgctggtccgcaacgatctcgtgttcttgctacattgtacaagg 79714 Score = 151 bits (76), Expect = 3e-33 Identities = 100/108 (92%) Strand = Plus / Plus Query: 58 caggtagtagtgattagagagaagcttgcagaactgtatgaatctgaacaacaatggtcg 117 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 78732 caggtggtagtgattagagagaagcttgcagaactgtatgagtctgaacaacaatggtca 78791 Query: 118 agagcagcacaaatgcttagtggcattgacttggactcaggaatcagg 165 | ||| ||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 78792 aaagctgcacagatgcttagtgggattgacttggactcagggatcagg 78839 Score = 99.6 bits (50), Expect = 1e-17 Identities = 86/98 (87%) Strand = Plus / Plus Query: 316 aaggtctgctatgcgagaattttagatctaaaacgtaaattcttggaagctgcacttcga 375 ||||| ||||| || |||||||| ||||| || | | |||||||||||||||||||||| Sbjct: 79240 aaggtatgctacgctagaattttggatctgaagagaagattcttggaagctgcacttcga 79299 Query: 376 tactatggtatctctcagattgagcaacgccaaattgg 413 ||||||| |||||||||||||| |||||||||||||| Sbjct: 79300 tactatgacatctctcagattgaacaacgccaaattgg 79337 Score = 99.6 bits (50), Expect = 1e-17 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 1 aggtcgcccactacgcgctcacgcagnatccagcctcgtgtggtctccttcgaggagcag 60 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 77272 aggtcgcgcactacgcgctcacgcag-atccagcctcgtgtggtctccttcgaggagcag 77330 Query: 61 gt 62 || Sbjct: 77331 gt 77332 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 224 aggatgatgatgcagtgaatgctgaagcttttatcaacaaagcctcgtttttggtcacaa 283 ||||||||||| | || ||||||||||||||||| |||||||| || |||||||| |||| Sbjct: 79059 aggatgatgattctgttaatgctgaagcttttattaacaaagcttcatttttggtaacaa 79118 Query: 284 acagcaaccaggaagttctgaacttacaatacaaggt 320 |||| |||| ||| ||||||||||||| |||||||| Sbjct: 79119 acagtcaccaagaacttctgaacttacagtacaaggt 79155 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 160 atcaggatgcttgatgacacaaacaaattatccaagtgcgtccagattgcacgactctat 219 ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct: 78921 atcaggatgctggatgacacaaacaaattatccaaatgtgtccagattgcacgactttat 78980 Query: 220 ttggagg 226 || |||| Sbjct: 78981 ttagagg 78987 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 527 aggatgaaagatgctcaaagctcaagatatacccaatactgcaga 571 ||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 80418 aggatgagagatgctcaaagttgaagatatacccaatactgcaga 80462
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Plus Query: 420 agagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcacaatatt 479 |||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| Sbjct: 166418 agagatcgatgaaaatgctttggagcaagctcttagtgctgctgtgacatgcacaatatt 166477 Query: 480 ggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaagg 529 |||||||||||| || ||||| ||||| |||||||||||||||||||||| Sbjct: 166478 ggctggtgctggtccgcaacgatctcgtgttcttgctacattgtacaagg 166527 Score = 151 bits (76), Expect = 3e-33 Identities = 100/108 (92%) Strand = Plus / Plus Query: 58 caggtagtagtgattagagagaagcttgcagaactgtatgaatctgaacaacaatggtcg 117 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 165545 caggtggtagtgattagagagaagcttgcagaactgtatgagtctgaacaacaatggtca 165604 Query: 118 agagcagcacaaatgcttagtggcattgacttggactcaggaatcagg 165 | ||| ||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 165605 aaagctgcacagatgcttagtgggattgacttggactcagggatcagg 165652 Score = 99.6 bits (50), Expect = 1e-17 Identities = 86/98 (87%) Strand = Plus / Plus Query: 316 aaggtctgctatgcgagaattttagatctaaaacgtaaattcttggaagctgcacttcga 375 ||||| ||||| || |||||||| ||||| || | | |||||||||||||||||||||| Sbjct: 166053 aaggtatgctacgctagaattttggatctgaagagaagattcttggaagctgcacttcga 166112 Query: 376 tactatggtatctctcagattgagcaacgccaaattgg 413 ||||||| |||||||||||||| |||||||||||||| Sbjct: 166113 tactatgacatctctcagattgaacaacgccaaattgg 166150 Score = 99.6 bits (50), Expect = 1e-17 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 1 aggtcgcccactacgcgctcacgcagnatccagcctcgtgtggtctccttcgaggagcag 60 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 164085 aggtcgcgcactacgcgctcacgcag-atccagcctcgtgtggtctccttcgaggagcag 164143 Query: 61 gt 62 || Sbjct: 164144 gt 164145 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 224 aggatgatgatgcagtgaatgctgaagcttttatcaacaaagcctcgtttttggtcacaa 283 ||||||||||| | || ||||||||||||||||| |||||||| || |||||||| |||| Sbjct: 165872 aggatgatgattctgttaatgctgaagcttttattaacaaagcttcatttttggtaacaa 165931 Query: 284 acagcaaccaggaagttctgaacttacaatacaaggt 320 |||| |||| ||| ||||||||||||| |||||||| Sbjct: 165932 acagtcaccaagaacttctgaacttacagtacaaggt 165968 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 160 atcaggatgcttgatgacacaaacaaattatccaagtgcgtccagattgcacgactctat 219 ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct: 165734 atcaggatgctggatgacacaaacaaattatccaaatgtgtccagattgcacgactttat 165793 Query: 220 ttggagg 226 || |||| Sbjct: 165794 ttagagg 165800 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 527 aggatgaaagatgctcaaagctcaagatatacccaatactgcaga 571 ||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 167231 aggatgagagatgctcaaagttgaagatatacccaatactgcaga 167275
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 420 agagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcacaatatt 479 |||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| Sbjct: 5089317 agagatcgatgaaaatgctttggagcaagctcttagtgctgctgtgacatgcacaatatt 5089258 Query: 480 ggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaagg 529 |||||||||||| || ||||| ||||| |||||||||||||||||||||| Sbjct: 5089257 ggctggtgctggtccgcaacgatctcgtgttcttgctacattgtacaagg 5089208 Score = 151 bits (76), Expect = 3e-33 Identities = 100/108 (92%) Strand = Plus / Minus Query: 58 caggtagtagtgattagagagaagcttgcagaactgtatgaatctgaacaacaatggtcg 117 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 5090190 caggtggtagtgattagagagaagcttgcagaactgtatgagtctgaacaacaatggtca 5090131 Query: 118 agagcagcacaaatgcttagtggcattgacttggactcaggaatcagg 165 | ||| ||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 5090130 aaagctgcacagatgcttagtgggattgacttggactcagggatcagg 5090083 Score = 99.6 bits (50), Expect = 1e-17 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 1 aggtcgcccactacgcgctcacgcagnatccagcctcgtgtggtctccttcgaggagcag 60 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 5091650 aggtcgcgcactacgcgctcacgcag-atccagcctcgtgtggtctccttcgaggagcag 5091592 Query: 61 gt 62 || Sbjct: 5091591 gt 5091590 Score = 99.6 bits (50), Expect = 1e-17 Identities = 86/98 (87%) Strand = Plus / Minus Query: 316 aaggtctgctatgcgagaattttagatctaaaacgtaaattcttggaagctgcacttcga 375 ||||| ||||| || |||||||| ||||| || | | |||||||||||||||||||||| Sbjct: 5089682 aaggtatgctacgctagaattttggatctgaagagaagattcttggaagctgcacttcga 5089623 Query: 376 tactatggtatctctcagattgagcaacgccaaattgg 413 ||||||| |||||||||||||| |||||||||||||| Sbjct: 5089622 tactatgacatctctcagattgaacaacgccaaattgg 5089585 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 224 aggatgatgatgcagtgaatgctgaagcttttatcaacaaagcctcgtttttggtcacaa 283 ||||||||||| | || ||||||||||||||||| |||||||| || |||||||| |||| Sbjct: 5089863 aggatgatgattctgttaatgctgaagcttttattaacaaagcttcatttttggtaacaa 5089804 Query: 284 acagcaaccaggaagttctgaacttacaatacaaggt 320 |||| |||| ||| ||||||||||||| |||||||| Sbjct: 5089803 acagtcaccaagaacttctgaacttacagtacaaggt 5089767 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 160 atcaggatgcttgatgacacaaacaaattatccaagtgcgtccagattgcacgactctat 219 ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct: 5090001 atcaggatgctggatgacacaaacaaattatccaaatgtgtccagattgcacgactttat 5089942 Query: 220 ttggagg 226 || |||| Sbjct: 5089941 ttagagg 5089935 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 527 aggatgaaagatgctcaaagctcaagatatacccaatactgcaga 571 ||||||| |||||||||||| | |||||||||||||||||||||| Sbjct: 5088504 aggatgagagatgctcaaagttgaagatatacccaatactgcaga 5088460
>ref|NM_123663.1| Arabidopsis thaliana COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) AT5G42970 (COP8) mRNA, complete cds Length = 1563 Score = 129 bits (65), Expect = 1e-26 Identities = 224/277 (80%) Strand = Plus / Plus Query: 295 gaagttctgaacttacaatacaaggtctgctatgcgagaattttagatctaaaacgtaaa 354 |||||| |||| || || ||||||||||||||||| |||||||| || | ||| | || Sbjct: 601 gaagttttgaatttgcagtacaaggtctgctatgctagaattttggacatgaaaagaaag 660 Query: 355 ttcttggaagctgcacttcgatactatggtatctctcagattgagcaacgccaaattggg 414 || || || ||||||||||| || || || || ||||||||||||||||||||||| ||| Sbjct: 661 tttttagaggctgcacttcggtattacggcatatctcagattgagcaacgccaaataggg 720 Query: 415 gatgaagagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcaca 474 ||||||||||||||||| |||||| | ||||| || || |||||||| ||||| || Sbjct: 721 gatgaagagattgatgagaatgctttagagcaggccctatcagctgctgtcacatgtacc 780 Query: 475 atattggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaaggatgaa 534 ||||| ||||| ||||| || || || ||||| |||||||| || || ||||| ||||| Sbjct: 781 atattagctggagctggtcctcagcgttctcgtgttcttgcaactttatacaaagatgag 840 Query: 535 agatgctcaaagctcaagatatacccaatactgcaga 571 | ||||| ||||| ||||| || || || ||||||| Sbjct: 841 cgttgctccaagctgaagatttatcctatcctgcaga 877
>gb|BT025548.1| Arabidopsis thaliana At5g42970 mRNA, complete cds Length = 1194 Score = 129 bits (65), Expect = 1e-26 Identities = 224/277 (80%) Strand = Plus / Plus Query: 295 gaagttctgaacttacaatacaaggtctgctatgcgagaattttagatctaaaacgtaaa 354 |||||| |||| || || ||||||||||||||||| |||||||| || | ||| | || Sbjct: 517 gaagttttgaatttgcagtacaaggtctgctatgctagaattttggacatgaaaagaaag 576 Query: 355 ttcttggaagctgcacttcgatactatggtatctctcagattgagcaacgccaaattggg 414 || || || ||||||||||| || || || || ||||||||||||||||||||||| ||| Sbjct: 577 tttttagaggctgcacttcggtattacggcatatctcagattgagcaacgccaaataggg 636 Query: 415 gatgaagagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcaca 474 ||||||||||||||||| |||||| | ||||| || || |||||||| ||||| || Sbjct: 637 gatgaagagattgatgagaatgctttagagcaggccctatcagctgctgtcacatgtacc 696 Query: 475 atattggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaaggatgaa 534 ||||| ||||| ||||| || || || ||||| |||||||| || || ||||| ||||| Sbjct: 697 atattagctggagctggtcctcagcgttctcgtgttcttgcaactttatacaaagatgag 756 Query: 535 agatgctcaaagctcaagatatacccaatactgcaga 571 | ||||| ||||| ||||| || || || ||||||| Sbjct: 757 cgttgctccaagctgaagatttatcctatcctgcaga 793
>gb|AF395060.1|AF395060 Arabidopsis thaliana CSN complex subunit 4 (CSN4) mRNA, complete cds Length = 1210 Score = 129 bits (65), Expect = 1e-26 Identities = 224/277 (80%) Strand = Plus / Plus Query: 295 gaagttctgaacttacaatacaaggtctgctatgcgagaattttagatctaaaacgtaaa 354 |||||| |||| || || ||||||||||||||||| |||||||| || | ||| | || Sbjct: 517 gaagttttgaatttgcagtacaaggtctgctatgctagaattttggacatgaaaagaaag 576 Query: 355 ttcttggaagctgcacttcgatactatggtatctctcagattgagcaacgccaaattggg 414 || || || ||||||||||| || || || || ||||||||||||||||||||||| ||| Sbjct: 577 tttttagaggctgcacttcggtattacggcatatctcagattgagcaacgccaaataggg 636 Query: 415 gatgaagagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcaca 474 ||||||||||||||||| |||||| | ||||| || || |||||||| ||||| || Sbjct: 637 gatgaagagattgatgagaatgctttagagcaggccctatcagctgctgtcacatgtacc 696 Query: 475 atattggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaaggatgaa 534 ||||| ||||| ||||| || || || ||||| |||||||| || || ||||| ||||| Sbjct: 697 atattagctggagctggtcctcagcgttctcgtgttcttgcaactttatacaaagatgag 756 Query: 535 agatgctcaaagctcaagatatacccaatactgcaga 571 | ||||| ||||| ||||| || || || ||||||| Sbjct: 757 cgttgctccaagctgaagatttatcctatcctgcaga 793
>dbj|AK176360.1| Arabidopsis thaliana mRNA for COP8 (constitutive photomorphogenic) homolog, complete cds, clone: RAFL24-06-F15 Length = 1591 Score = 129 bits (65), Expect = 1e-26 Identities = 224/277 (80%) Strand = Plus / Plus Query: 295 gaagttctgaacttacaatacaaggtctgctatgcgagaattttagatctaaaacgtaaa 354 |||||| |||| || || ||||||||||||||||| |||||||| || | ||| | || Sbjct: 599 gaagttttgaatttgcagtacaaggtctgctatgctagaattttggacatgaaaagaaag 658 Query: 355 ttcttggaagctgcacttcgatactatggtatctctcagattgagcaacgccaaattggg 414 || || || ||||||||||| || || || || ||||||||||||||||||||||| ||| Sbjct: 659 tttttagaggctgcacttcggtattacggcatatctcagattgagcaacgccaaataggg 718 Query: 415 gatgaagagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcaca 474 ||||||||||||||||| |||||| | ||||| || || |||||||| ||||| || Sbjct: 719 gatgaagagattgatgagaatgctttagagcaggccctatcagctgctgtcacatgtacc 778 Query: 475 atattggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaaggatgaa 534 ||||| ||||| ||||| || || || ||||| |||||||| || || ||||| ||||| Sbjct: 779 atattagctggagctggtcctcagcgttctcgtgttcttgcaactttatacaaagatgag 838 Query: 535 agatgctcaaagctcaagatatacccaatactgcaga 571 | ||||| ||||| ||||| || || || ||||||| Sbjct: 839 cgttgctccaagctgaagatttatcctatcctgcaga 875
>gb|AF176089.1|AF176089 Arabidopsis thaliana COP8 mRNA, complete cds Length = 1194 Score = 121 bits (61), Expect = 3e-24 Identities = 223/277 (80%) Strand = Plus / Plus Query: 295 gaagttctgaacttacaatacaaggtctgctatgcgagaattttagatctaaaacgtaaa 354 |||||| |||| || || |||||||||||||| || |||||||| || | ||| | || Sbjct: 517 gaagttttgaatttgcagtacaaggtctgctacgctagaattttggacatgaaaagaaag 576 Query: 355 ttcttggaagctgcacttcgatactatggtatctctcagattgagcaacgccaaattggg 414 || || || ||||||||||| || || || || ||||||||||||||||||||||| ||| Sbjct: 577 tttttagaggctgcacttcggtattacggcatatctcagattgagcaacgccaaataggg 636 Query: 415 gatgaagagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcaca 474 ||||||||||||||||| |||||| | ||||| || || |||||||| ||||| || Sbjct: 637 gatgaagagattgatgagaatgctttagagcaggccctatcagctgctgtcacatgtacc 696 Query: 475 atattggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaaggatgaa 534 ||||| ||||| ||||| || || || ||||| |||||||| || || ||||| ||||| Sbjct: 697 atattagctggagctggtcctcagcgttctcgtgttcttgcaactttatacaaagatgag 756 Query: 535 agatgctcaaagctcaagatatacccaatactgcaga 571 | ||||| ||||| ||||| || || || ||||||| Sbjct: 757 cgttgctccaagctgaagatttatcctatcctgcaga 793
>gb|AY087068.1| Arabidopsis thaliana clone 31282 mRNA, complete sequence Length = 1563 Score = 121 bits (61), Expect = 3e-24 Identities = 277/349 (79%) Strand = Plus / Plus Query: 223 gaggatgatgatgcagtgaatgctgaagcttttatcaacaaagcctcgtttttggtcaca 282 |||||||||||||| || ||||| || |||||||| || ||||| || || ||||| | Sbjct: 529 gaggatgatgatgctgtaaatgcagaggcttttataaataaagcttctttcttggtgagc 588 Query: 283 aacagcaaccaggaagttctgaacttacaatacaaggtctgctatgcgagaattttagat 342 || || | | |||||| |||| || || ||||||||||||||||| |||||||| || Sbjct: 589 aatagtcagaatgaagttttgaatttgcagtacaaggtctgctatgctagaattttggac 648 Query: 343 ctaaaacgtaaattcttggaagctgcacttcgatactatggtatctctcagattgagcaa 402 | ||| | || || || || ||||||||||| || || || || ||||||||||||||| Sbjct: 649 atgaaaagaaagtttttagaggctgcacttcggtattacggcatatctcagattgagcaa 708 Query: 403 cgccaaattggggatgaagagattgatgaaaatgctcttgagcaagctcttagtgctgct 462 |||||||| |||||||||||||||||||| |||||| | ||||| || || |||||| Sbjct: 709 cgccaaataggggatgaagagattgatgagaatgctttagagcaggccctatcagctgct 768 Query: 463 gtaacatgcacaatattggctggtgctggcccacaacgctctcgcgttcttgctacattg 522 || ||||| || ||||| ||||| ||||| || || || ||||| ||||||| || || Sbjct: 769 gtcacatgtaccatattagctggagctggtcctcagcgttctcgttttcttgcaacttta 828 Query: 523 tacaaggatgaaagatgctcaaagctcaagatatacccaatactgcaga 571 ||||| ||||| | ||||| ||||| ||||| || || || ||||||| Sbjct: 829 tacaaagatgagcgttgctccaagctgaagatttatcctatcctgcaga 877
>dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBD2 Length = 79976 Score = 69.9 bits (35), Expect = 9e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 317 aggtctgctatgcgagaattttagatctaaaacgtaaattcttggaagctgcacttcgat 376 ||||||||||||| |||||||| || | ||| | || || || || ||||||||||| | Sbjct: 67992 aggtctgctatgctagaattttggacatgaaaagaaagtttttagaggctgcacttcggt 67933 Query: 377 actatggtatctctcagattgagcaacgccaaattggggatga 419 | || || || ||||||||||||||||||||||| |||||||| Sbjct: 67932 attacggcatatctcagattgagcaacgccaaataggggatga 67890 Score = 40.1 bits (20), Expect = 7.8 Identities = 77/96 (80%) Strand = Plus / Minus Query: 420 agagattgatgaaaatgctcttgagcaagctcttagtgctgctgtaacatgcacaatatt 479 |||||||||||| |||||| | ||||| || || |||||||| ||||| || ||||| Sbjct: 67648 agagattgatgagaatgctttagagcaggccctatcagctgctgtcacatgtaccatatt 67589 Query: 480 ggctggtgctggcccacaacgctctcgcgttcttgc 515 ||||| ||||| || || || ||||| |||||||| Sbjct: 67588 agctggagctggtcctcagcgttctcgtgttcttgc 67553
>gb|BT019184.1| Zea mays clone Contig855.F mRNA sequence Length = 1394 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 527 aggatgaaagatgctcaaagctcaagatatacccaatactgcaga 571 |||||||||||||||| ||| | || ||||||||||||||||||| Sbjct: 634 aggatgaaagatgctcgaagttgaaaatatacccaatactgcaga 678 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 479 tggctggtgctggcccacaacgctctcgcgttcttgctacattgtacaagg 529 ||||||||||||| |||||||| || || ||||||||||| ||||||||| Sbjct: 1 tggctggtgctggtccacaacgttcccgtgttcttgctactctgtacaagg 51
>dbj|AP006081.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT32P24, TM0120, complete sequence Length = 137804 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 223 gaggatgatgatgcagtgaatgctgaagcttttatcaacaaagc 266 ||||||||||| |||||||||| ||||||||| ||||| ||||| Sbjct: 85516 gaggatgatgacgcagtgaatgttgaagctttcatcaataaagc 85559
>gb|AC135799.25| Medicago truncatula clone mth2-11f14, complete sequence Length = 118281 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 67 gtgattagagagaagcttgcagaactg 93 |||||| |||||||||||||||||||| Sbjct: 14606 gtgatttgagagaagcttgcagaactg 14632
>gb|AC147406.13| Medicago truncatula clone mth2-154b3, complete sequence Length = 116463 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 67 gtgattagagagaagcttgcagaactg 93 |||||| |||||||||||||||||||| Sbjct: 40599 gtgatttgagagaagcttgcagaactg 40625
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome Length = 2572079 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 430 gaaaatgctcttgagcaagctc 451 |||||||||||||||||||||| Sbjct: 2193493 gaaaatgctcttgagcaagctc 2193472
>gb|DQ437743.1| Pseudomonas aeruginosa strain 19660 ExoU Island B, complete sequence Length = 30407 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 424 attgatgaaaatgctcttgagcaagc 449 ||||||| |||||||||||||||||| Sbjct: 5691 attgatgtaaatgctcttgagcaagc 5666
>gb|AE006450.1| Lactococcus lactis subsp. lactis IL1403 section 212 of 218 of the complete genome Length = 10573 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 atgatgatgcagtgaatgctg 247 ||||||||||||||||||||| Sbjct: 2504 atgatgatgcagtgaatgctg 2484
>emb|AL669998.1|NCB1K11 Neurospora crassa DNA linkage group II BAC clone B1K11 Length = 88013 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 545 agctcaagatatacccaatactgca 569 |||||| |||||||||||||||||| Sbjct: 79157 agctcacgatatacccaatactgca 79133
>gb|AF091119.1|AF091119 Lactococcus lactis DNA mismatch repair protein HexA (hexA) gene, complete cds; and HexB (hexB) gene, partial cds Length = 5002 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 atgatgatgcagtgaatgctg 247 ||||||||||||||||||||| Sbjct: 674 atgatgatgcagtgaatgctg 694
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome Length = 1197687 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 468 atgcacaatattggctggtgc 488 ||||||||||||||||||||| Sbjct: 234787 atgcacaatattggctggtgc 234807
>ref|NM_114897.2| Arabidopsis thaliana unknown protein AT3G50370 mRNA, complete cds Length = 6917 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gccaaattggggatgaagag 423 |||||||||||||||||||| Sbjct: 3513 gccaaattggggatgaagag 3494
>gb|AC144860.2| Mus musculus BAC clone RP24-133K9 from chromosome 17, complete sequence Length = 170928 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 agaactgtatgaatctgaacaaca 110 ||||||||||||||||| |||||| Sbjct: 69227 agaactgtatgaatctgtacaaca 69204
>ref|XM_818006.1| Trypanosoma brucei TREU927 GTPase activating protein (Tb10.6k15.1790) partial mRNA Length = 1023 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ccaaattggggatgaagaga 424 |||||||||||||||||||| Sbjct: 528 ccaaattggggatgaagaga 547
>ref|XM_735954.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000752.03.0) partial mRNA Length = 1692 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 gatgaagagattgatgaaaa 434 |||||||||||||||||||| Sbjct: 724 gatgaagagattgatgaaaa 743
>gb|AC129092.13| Medicago truncatula clone mth2-17n16, complete sequence Length = 104281 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 tacaaggatgaaagatgctc 542 |||||||||||||||||||| Sbjct: 21223 tacaaggatgaaagatgctc 21242
>emb|CR788305.17| Zebrafish DNA sequence from clone DKEYP-59G5 in linkage group 20, complete sequence Length = 187351 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 ttagtgctgctgtaacatgc 471 |||||||||||||||||||| Sbjct: 134397 ttagtgctgctgtaacatgc 134378
>emb|AL607079.7| Human DNA sequence from clone RP11-565A2 on chromosome 6, complete sequence Length = 144569 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aatgctgaagcttttatcaa 260 |||||||||||||||||||| Sbjct: 9924 aatgctgaagcttttatcaa 9943
>emb|AL109626.6|HSJ601K24 Human DNA sequence from clone RP4-601K24 on chromosome 1p22.3-31.2, complete sequence Length = 129467 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 atgatgatgcagtgaatgctgaag 250 |||||| ||||||||||||||||| Sbjct: 30303 atgatggtgcagtgaatgctgaag 30326
>emb|AL731621.3|OSJN00268 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence Length = 118791 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 acgccaaattggggatgaagagat 425 ||||||||||| |||||||||||| Sbjct: 94613 acgccaaattgaggatgaagagat 94636
>emb|AL132976.2|ATF11C1 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1 Length = 111122 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gccaaattggggatgaagag 423 |||||||||||||||||||| Sbjct: 80616 gccaaattggggatgaagag 80635
>gb|AC113187.6| Homo sapiens chromosome 15, clone RP11-924B20, complete sequence Length = 205998 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 cttggactcaggaatcagga 166 |||||||||||||||||||| Sbjct: 167604 cttggactcaggaatcagga 167623
>gb|AC103594.3| Homo sapiens chromosome 1 clone RP11-289A2, complete sequence Length = 51254 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 atgatgatgcagtgaatgctgaag 250 |||||| ||||||||||||||||| Sbjct: 46597 atgatggtgcagtgaatgctgaag 46620
>gb|AC146706.8| Medicago truncatula clone mth2-108g5, complete sequence Length = 106753 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gcttagtggcattgacttgg 151 |||||||||||||||||||| Sbjct: 101085 gcttagtggcattgacttgg 101066
>gb|AC069133.6| Homo sapiens BAC clone RP11-579E24 from 8, complete sequence Length = 201146 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ttgatgacacaaacaaatta 189 |||||||||||||||||||| Sbjct: 116964 ttgatgacacaaacaaatta 116945
>gb|AC154538.2| Mus musculus BAC clone RP23-451M23 from chromosome 16, complete sequence Length = 176390 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aagcttgcagaactgtatga 98 |||||||||||||||||||| Sbjct: 51286 aagcttgcagaactgtatga 51305
>gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (AHC2) gene, complete cds Length = 68460 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gcttagtggcattgacttgg 151 |||||||||||||||||||| Sbjct: 64072 gcttagtggcattgacttgg 64091
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 acgccaaattggggatgaagagat 425 ||||||||||| |||||||||||| Sbjct: 13458257 acgccaaattgaggatgaagagat 13458280
>gb|AC008245.6| Homo sapiens chromosome 18, clone RP11-146N18, complete sequence Length = 183749 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 acattgtacaaggatgaaag 536 |||||||||||||||||||| Sbjct: 75827 acattgtacaaggatgaaag 75846
>gb|AC008215.5|AC008215 Drosophila melanogaster, chromosome 3R, region 97C-97C, BAC clone BACR08N03, complete sequence Length = 165439 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 atgacacaaacaaattatcc 192 |||||||||||||||||||| Sbjct: 97094 atgacacaaacaaattatcc 97113
>gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 17 (ADAMTS17) gene, complete cds; and 5S ribosomal RNA gene, complete sequence Length = 371157 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 cttggactcaggaatcagga 166 |||||||||||||||||||| Sbjct: 62499 cttggactcaggaatcagga 62480
>gb|AC006031.2|AC006031 Homo sapiens BAC clone RP11-44G14 from 7q11.23-21.1, complete sequence Length = 170624 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 atgatgatgcagtgaatgctgaag 250 |||||| ||||||||||||||||| Sbjct: 26760 atgatggtgcagtgaatgctgaag 26783
>emb|BX537259.24| Zebrafish DNA sequence from clone CH211-241P10 in linkage group 20, complete sequence Length = 185460 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 ttagtgctgctgtaacatgc 471 |||||||||||||||||||| Sbjct: 24240 ttagtgctgctgtaacatgc 24259
>gb|AE003757.2| Drosophila melanogaster chromosome 3R, section 95 of 118 of the complete sequence Length = 191834 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 atgacacaaacaaattatcc 192 |||||||||||||||||||| Sbjct: 105625 atgacacaaacaaattatcc 105644 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,919,319 Number of Sequences: 3902068 Number of extensions: 4919319 Number of successful extensions: 102934 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102678 Number of HSP's gapped (non-prelim): 242 length of query: 571 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 548 effective length of database: 17,143,297,704 effective search space: 9394527141792 effective search space used: 9394527141792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
