>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3|
          Length = 1333

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
 Frame = +1

Query: 253  EQGYILRQGL-IRYQGSIWVGANSGLHTKLIESFHASPVGGHSGIQATYQRVKKLFCWEG 429
            E+   L+ GL I  +  I +  ++ L   +I+ +H      H GI+     + + F W+G
Sbjct: 886  EENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG 945

Query: 430  IKQDVQNFVXXXXXXXXAKHENCKYPGLLNPLPIPTKAWEDVTMDFVEGLPK 585
            I++ +Q +V         K  N K  G L P+P   + WE ++MDF+  LP+
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE 997

>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2|
          Length = 1333

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
 Frame = +1

Query: 253  EQGYILRQGL-IRYQGSIWVGANSGLHTKLIESFHASPVGGHSGIQATYQRVKKLFCWEG 429
            E+   L+ GL I  +  I +  ++ L   +I+ +H      H GI+     + + F W+G
Sbjct: 886  EENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG 945

Query: 430  IKQDVQNFVXXXXXXXXAKHENCKYPGLLNPLPIPTKAWEDVTMDFVEGLPK 585
            I++ +Q +V         K  N K  G L P+P   + WE ++MDF+  LP+
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE 997

>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1|
          Length = 1333

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
 Frame = +1

Query: 253  EQGYILRQGL-IRYQGSIWVGANSGLHTKLIESFHASPVGGHSGIQATYQRVKKLFCWEG 429
            E+   L+ GL I  +  I +  ++ L   +I+ +H      H GI+     + + F W+G
Sbjct: 886  EENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG 945

Query: 430  IKQDVQNFVXXXXXXXXAKHENCKYPGLLNPLPIPTKAWEDVTMDFVEGLPK 585
            I++ +Q +V         K  N K  G L P+P   + WE ++MDF+  LP+
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE 997

>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6|
          Length = 1268

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 370 GHSGIQATYQRVKKLFCWEGIKQDVQNFVXXXXXXXXAKHENCKYPGL--LNPLPIPTKA 543
           GH GI    Q+ +    W G+  D++N V           EN K P +  LNP P+P   
Sbjct: 793 GHPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNC----QENSKMPRVVPLNPWPVPEAP 848

Query: 544 WEDVTMDF 567
           W+ + +DF
Sbjct: 849 WKRIHIDF 856

>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from transposon 412|
            [Includes: Protease (EC 3.4.23.-); Reverse transcriptase
            (EC 2.7.7.49); Endonuclease]
          Length = 1237

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
 Frame = +1

Query: 337  LIESFHASPV-GGHSGIQATYQRVKKLFCWEGIKQDVQNFVXXXXXXXXAK-HENCKYPG 510
            ++ + H  P+ GGH+GI  T  +VK+ + W+ + + ++ +V        AK  ++ K P 
Sbjct: 896  ILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTP- 954

Query: 511  LLNPLPIPTKAWEDVTMDFVEGLPK 585
             +     P  A++ V +D +  LPK
Sbjct: 955  -MTITETPEHAFDRVVVDTIGPLPK 978

>YMR2_EBV (P03192) Protein BMRF2|
          Length = 357

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -2

Query: 186 MTSCSQRLSSGNCLYCKNMPHSGKSICCFVFTAFLVLE 73
           M SC Q LS G C++C  +  S   I CFVF   L LE
Sbjct: 1   MFSCKQHLSLGACVFCLGLLASTPFIWCFVFANLLSLE 38

>HDAC6_MOUSE (Q9Z2V5) Histone deacetylase 6 (HD6) (Histone deacetylase mHDA2)|
          Length = 1149

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 224  VTPVPWCPHCRN**PLAAKG*AVETACIAKTCPTLERAYAAL 99
            VTP+ WCPH     P+ A G  V   C  KTC T++  +  L
Sbjct: 1041 VTPLSWCPHLMAVCPIPAAGLDVSQPC--KTCGTVQENWVCL 1080

>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse|
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
            (RT); Integrase (IN)]
          Length = 1161

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +1

Query: 373  HSGIQATYQRVKKLFCWEGIKQDVQNFVXXXXXXXXAKHENCKYPGLLNPLPIPTKAWED 552
            H+G  AT+ +V   + W  +++DV   +            N   P +L P+  P K ++ 
Sbjct: 828  HTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVK-PLKPFDK 886

Query: 553  VTMDFVEGLP 582
              +D++  LP
Sbjct: 887  FYIDYIGPLP 896

>ZBT11_HUMAN (O95625) Zinc finger and BTB domain-containing protein 11|
          Length = 1053

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +1

Query: 262 YILRQGLIRYQ---------GSIWVGANSGLHTKLIESFHASPVGGHSGIQATYQRVKKL 414
           Y++R G + YQ           + V         LIE+ H  P G H     T+  + K 
Sbjct: 40  YVVRGGTLYYQRRQRHRKTFAELEVVLQPERRRDLIEAAHLGPGGTHHTRHQTWHYLSKT 99

Query: 415 FCWEGIKQDVQNFV 456
           + W GI + V++++
Sbjct: 100 YWWRGILKQVKDYI 113

>HDAC6_HUMAN (Q9UBN7) Histone deacetylase 6 (HD6)|
          Length = 1215

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 224  VTPVPWCPHCRN**PLAAKG*AVETACIAKTCPTLERAYAAL 99
            VTP+PWCPH     P+ A G  V   C    C T++  +  L
Sbjct: 1107 VTPLPWCPHLVAVCPIPAAGLDVTQPC--GDCGTIQENWVCL 1146

>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III|
          Length = 2186

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 325  LHTKLIESFHASPVGGHSGIQATYQRVKKLFCWEGIKQDVQNFV 456
            + T L++  H   + GH GI+  ++ V + F W  ++  V+N V
Sbjct: 1464 IRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCV 1507

>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse|
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
            (RT); Integrase (IN)]
          Length = 886

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 12/162 (7%)
 Frame = +1

Query: 133  VFAIQAVSTAQPLAARGHQFLQCGHQGTGVT---------HKIGSFPGAEQGYILRQGLI 285
            VF ++  + A  LA +G   + C  +   +          H I  +P  +  Y L  G +
Sbjct: 533  VFILKGNALADKLATQGSYVVNCNTKKPNLDAELDQLLQGHYIKGYP-KQYTYFLEDGKV 591

Query: 286  ---RYQGSIWVGANSGLHTKLIESFHASPVGGHSGIQATYQRVKKLFCWEGIKQDVQNFV 456
               R +G   +   S     ++++ + +    H+G +AT  ++  L+ W  +++DV   +
Sbjct: 592  KVSRPEGVKIIPPQSDRQKIVLQAHNLA----HTGREATLLKIANLYWWPNMRKDVVKQL 647

Query: 457  XXXXXXXXAKHENCKYPGLLNPLPIPTKAWEDVTMDFVEGLP 582
                        N     +L P   P K ++   +D++  LP
Sbjct: 648  GRCQQCLITNASNKASGPILRP-DRPQKPFDKFFIDYIGPLP 688

>Y236_BUCBP (Q89AM8) Hypothetical protein bbp_236|
          Length = 162

 Score = 25.4 bits (54), Expect(2) = 4.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 392 HTRGSRNCFVGKGLNRMSRTLCNNVKYVNRPSMKTANTQ-VFSTPCPYLL 538
           H+R SR  F  K  N      C N  ++N+   K + TQ V  + C  LL
Sbjct: 93  HSRISRLVFGAKYKNLQKYICCKNHFFINKNFRKISITQEVLESECSNLL 142



 Score = 23.5 bits (49), Expect(2) = 4.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 351 PCLSCWGALWHS 386
           PC+ C+GA+ HS
Sbjct: 83  PCIMCYGAIIHS 94

>C12AA_BACTU (Q45754) Pesticidal crystal protein cry12Aa (Insecticidal|
           delta-endotoxin CryXIIA(a)) (Crystaline entomocidal
           protoxin) (142 kDa crystal protein)
          Length = 1257

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 223 THKIGSFPGAEQGYILRQGLIRYQG 297
           T KI  FP AE+GYI  QG+++Y G
Sbjct: 482 TEKIKGFP-AEKGYIKNQGIMKYYG 505

>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s|
           chain)
          Length = 1798

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 102 SSICSFQSGACFCNTGSFHCSAFGCKR 182
           SS+C   SG C C TG+F      C+R
Sbjct: 840 SSLCEKTSGQCLCRTGAFGLRCDRCQR 866

>YIU0_YEAST (P40575) Hypothetical 11.7 kDa protein in MAL5-MRS1 intergenic|
           region
          Length = 100

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 35  RKPWLS*LVCNSNSSTRKAVKTKQHMLFPEWGMFLQYRQFPLLSLWLQEVINSYSV 202
           R PW S + CN+  +T  AV ++  +L P  G         +++ W +   N +S+
Sbjct: 44  RIPWDSVIRCNNTGTTHSAVSSRTELLLPIGG---------VINNWKRRAWNGFSI 90

>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse|
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
            (RT); Integrase (IN)]
          Length = 1157

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 15/70 (21%), Positives = 30/70 (42%)
 Frame = +1

Query: 373  HSGIQATYQRVKKLFCWEGIKQDVQNFVXXXXXXXXAKHENCKYPGLLNPLPIPTKAWED 552
            H+G  +T+ +V   + W  +++DV   +                P +L P   P K ++ 
Sbjct: 830  HTGRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCLVTNAATLAAPPILRP-ERPVKPFDK 888

Query: 553  VTMDFVEGLP 582
              +D++  LP
Sbjct: 889  FFIDYIGPLP 898

>EXP20_ARATH (Q9SZM1) Alpha-expansin 20 precursor (AtEXPA20) (At-EXP20) (AtEx20)|
           (Ath-ExpAlpha-1.23)
          Length = 256

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
 Frame = +3

Query: 45  G*ASWSAIQIPVQERL*KQSSICSFQSGACFCNTGSFHC------------SAFGCKRSS 188
           G A   A  IP+Q R  K    C  + G  F  +GS H                G K   
Sbjct: 139 GIAETRAEMIPIQYRRVK----CGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKG 194

Query: 189 IPTVWTPGHRSYSQNWQFS 245
             T W P  R++ QNW  S
Sbjct: 195 HTTAWIPMARNWGQNWHSS 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,145,974
Number of Sequences: 219361
Number of extensions: 2108336
Number of successful extensions: 5402
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5398
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)