ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9g17 |
|---|---|
| Clone Library Name | barley_pub |
>BCHG_CHLAU (P33326) Bacteriochlorophyll synthase 34 kDa chain| Length = 310 Score = 99.8 bits (247), Expect = 6e-21 Identities = 55/140 (39%), Positives = 78/140 (55%) Frame = +2 Query: 71 IIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVL 250 + F++ALG + + YS P++ K+NGWIGN + SY GL W AG A F LT + V + Sbjct: 135 VAFFVALG-LVFALAYSLRPIRGKRNGWIGNALVAISYEGLAWMAGHAAFAPLTGESVTI 193 Query: 251 TTLYSIAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGMDTAKWICVGAIDITQLSVAAYLL 430 LYS+ GI VNDFKSI GD +G++S+PV +G A + V + + Q++V L Sbjct: 194 ALLYSLGAHGIMTVNDFKSIRGDTIMGIRSIPVQYGKVMAARMVVTTMGVAQIAVIGLLF 253 Query: 431 STGKLYYALALVGLTIPQVI 490 G A + L Q I Sbjct: 254 HWGHPVAATVVAILLAAQSI 273
>BCHG_RHOCA (P26170) Bacteriochlorophyll synthase 33 kDa chain (Geranylgeranyl| bacteriochlorophyll synthase) Length = 304 Score = 94.0 bits (232), Expect = 4e-19 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Frame = +2 Query: 20 VLGWVLC*XVWAGHDFPIIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPW 199 V+GW L W F L G ++ YS P++LK++GW G +G +Y GLPW Sbjct: 112 VVGWQL--GSWG-------FVATLLGVAAAWAYSVEPIRLKRSGWWGPGLVGLAYEGLPW 162 Query: 200 WAGQALFGTLTPD------IVVLTTLYSIAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGM 361 G A+ T D IV++ TLY++ GI +NDFK+IEGDR LG++SLP +G Sbjct: 163 ITGAAVL-LATADTSPGFPIVMMATLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGP 221 Query: 362 DTAKWICVGAIDITQLSVAAYLLSTGKLYYALALVGLTIPQ 484 + A I + + Q V L K Y+A A++ L Q Sbjct: 222 EVAAKIACTVMGLAQALVITMLYLFSKPYHATAVLVLLCGQ 262
>BCHG_RHOS4 (Q9Z5D6) Bacteriochlorophyll synthase 33 kDa chain (Geranylgeranyl| bacteriochlorophyll synthase) Length = 302 Score = 88.2 bits (217), Expect = 2e-17 Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 2/133 (1%) Frame = +2 Query: 95 GSLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTT--LYSI 268 G L ++ YS P++LK++GW G + Y GLPW+ G A+ P ++T LY+ Sbjct: 127 GVLAAWAYSVEPIRLKRSGWWGPGLVALCYEGLPWFTGAAVLSAGAPSFFIVTVALLYAF 186 Query: 269 AGLGIAIVNDFKSIEGDRTLGLQSLPVAFGMDTAKWICVGAIDITQLSVAAYLLSTGKLY 448 GI +NDFK++EGDR G++SLPV G + A + + + Q+ V L+ GK Sbjct: 187 GAHGIMTLNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMAQILVITLLVIWGKPI 246 Query: 449 YALALVGLTIPQV 487 +A + L + Q+ Sbjct: 247 HAGIITALLVAQL 259
>Y279_METJA (Q57727) Hypothetical protein MJ0279| Length = 283 Score = 44.7 bits (104), Expect = 2e-04 Identities = 36/127 (28%), Positives = 61/127 (48%) Frame = +2 Query: 83 LALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTTLY 262 +A+ +L Y+Y+ K K IGNF +G + + G A + I+ L +L Sbjct: 114 IAVINALFLYLYAKKYKKYKP---IGNFIIGYLTGSVFLFGGVAGKNVMPVVILFLCSLL 170 Query: 263 SIAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGMDTAKWICVGAIDITQLSVAAYLLSTGK 442 SI G IV DF+ +EGD+ G+ SLP+ +G + + + LS Y+L Sbjct: 171 SIWGR--EIVKDFEDMEGDKKEGVISLPIKYGKKSLYFATFLVVLAVILSPLPYILKIFG 228 Query: 443 LYYALAL 463 ++Y + + Sbjct: 229 IWYLILI 235
>ARNT_ERWCT (Q6D2F3) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose| arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) Length = 556 Score = 37.4 bits (85), Expect = 0.039 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 3/150 (2%) Frame = +2 Query: 68 PIIFYLALGGSLLSYIYSA-PPLKLKQNGWIGNFA--LGASYIGLPWWAGQALFGTLTPD 238 P++F+ G LL+YI PL L WI A + + + W G L Sbjct: 305 PLLFFSIAKGKLLTYILPCFAPLALLMAAWISGLAPVVRERLLRINSWLNIVFGGVLGLA 364 Query: 239 IVVLTTLYSIAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGMDTAKWICVGAIDITQLSVA 418 + L GLGI + + ++ EG L + S V F WI A+ + + Sbjct: 365 VAAL-------GLGIIVPHFYQPGEG---LTIISGIVCF----IGWIAFAAVSLRKQQTW 410 Query: 419 AYLLSTGKLYYALALVGLTIPQVILQVS*P 508 YL++ L+ AL LVG +IP ++ P Sbjct: 411 GYLVAGCPLFLAL-LVGGSIPASVVDSKNP 439
>FA13C_HUMAN (Q8NE31) Protein FAM13C1| Length = 585 Score = 32.0 bits (71), Expect = 1.7 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = -3 Query: 515 KRLVSSPARSPGELSVQ--LVPRHNTACQCSGGRLQQIIE*CRLLQHISILQCPYQKQQE 342 +R P +P S Q ++PR ++ C C G+ Q I +L +HI L+ +K +E Sbjct: 248 QRFNLDPESAPSPPSTQQFMMPRSSSRCSCGDGKEPQTI--TQLTKHIQSLKRKIRKFEE 305 Query: 341 VTEVPEFYPPQY 306 E + Y P + Sbjct: 306 KFEQEKKYRPSH 317
>CALCR_PIG (P25117) Calcitonin receptor precursor (CT-R)| Length = 498 Score = 28.1 bits (61), Expect(2) = 2.9 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +2 Query: 428 LSTGKLYYALALVGLTIPQVILQVS*PIFLDLGYYHFLVVFQNML 562 L + Y LA+VG ++ + L +S IF+ L Y++ L F +L Sbjct: 143 LQNAYILYYLAIVGHSLSILTLLISLGIFMFLRYFNLLAPFNALL 187 Score = 21.6 bits (44), Expect(2) = 2.9 Identities = 9/29 (31%), Positives = 15/29 (51%) Frame = +1 Query: 355 WYGHCKMDMCWSNRHHSIICCSLPPEHWQ 441 WY H + ++ WSN +C + P+ Q Sbjct: 119 WYRHPESNISWSN---YTMCNAFTPDKLQ 144
>RPOA_GLOVI (Q7NFF5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -3 Query: 566 RGACSEIQRENDNIQGPKRLVSSPARSPGELSVQLVPRHNTACQCSGGRLQ 414 R S+IQ +QGPKR+ ++ P E+ V + PRH A G+L+ Sbjct: 88 RSYTSDIQIGRLAVQGPKRVTAADLELPTEVQV-VHPRHYIATLAEDGQLE 137
>MRAY_THEFY (Q47QX2) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 351 Score = 30.4 bits (67), Expect = 4.8 Identities = 22/73 (30%), Positives = 33/73 (45%) Frame = +2 Query: 62 DFPIIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDI 241 D ++ ALGG + ++APP K+ G G+ ALG +GL L + + Sbjct: 225 DLAVVAAAALGGCIAFLWFNAPPAKIFM-GDTGSLALGGLLVGLAITTRTQLLLLVIGGL 283 Query: 242 VVLTTLYSIAGLG 280 VL T I +G Sbjct: 284 FVLITASVIIQVG 296
>PFPB_RICCO (Q41141) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 30.4 bits (67), Expect = 4.8 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = +2 Query: 302 KSIEGDRTLGLQSLPVAFGMDTAKWICVGAIDITQLSVAAYLLSTGKLYYALALVGLTIP 481 K+I+GD L + +P +FG DTA I I + STGK Y+ + L+G Sbjct: 211 KTIDGD--LKCKEVPTSFGFDTACKIYSEMIGNVMIDAR----STGKYYHFVRLMGRAAS 264 Query: 482 QVILQ 496 + L+ Sbjct: 265 HITLE 269
>SYV_ENTFA (Q82ZW6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 30.0 bits (66), Expect = 6.3 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 353 KQQEVTEVPEFYPPQYS*NHLRW 285 K QE + EFYPP+++ LRW Sbjct: 376 KNQETEDAVEFYPPRFNQTFLRW 398 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,608,741 Number of Sequences: 219361 Number of extensions: 2215608 Number of successful extensions: 5776 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5588 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5771 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
